mRNA_M-pyrifera_M_contig107633.1625.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107633.1625.1
Unique NamemRNA_M-pyrifera_M_contig107633.1625.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Match: A0A358A3V1_9ACTN (MOSC domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A3V1_9ACTN)

HSP 1 Score: 67.0 bits (162), Expect = 2.920e-13
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1
Query:    1 AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL 111
            AHRFVNSEVG ELHLRG+NARVVT G IRQGD IRK+
Sbjct:   82 AHRFVNSEVGTELHLRGVNARVVTPGTIRQGDMIRKI 118          
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Match: A0A3C1K8Q7_9MICO (MOSC domain-containing protein n=6 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1K8Q7_9MICO)

HSP 1 Score: 67.4 bits (163), Expect = 8.460e-13
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1
Query:    1 AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL 111
            AHRFVNSEVG ELHLRG+NARVVT G IRQGD IRK+
Sbjct:  150 AHRFVNSEVGTELHLRGVNARVVTPGTIRQGDTIRKI 186          
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Match: UPI00034D8C98 (hypothetical protein n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00034D8C98)

HSP 1 Score: 67.4 bits (163), Expect = 8.600e-13
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1
Query:    1 AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL 111
            AHRFVNSEVGKELHLRGINARVV+ G IR+GD IRKL
Sbjct:  151 AHRFVNSEVGKELHLRGINARVVSPGTIRRGDPIRKL 187          
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Match: A0A7X5WPV9_9ACTN (MOSC domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WPV9_9ACTN)

HSP 1 Score: 60.8 bits (146), Expect = 2.960e-10
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    1 AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL 111
            AHRFVNSE G  L LRG+NARVVT G IRQGD IRKL
Sbjct:  155 AHRFVNSEAGMALKLRGVNARVVTPGTIRQGDVIRKL 191          
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Match: A9B5P0_HERA2 (MOSC domain-containing protein n=4 Tax=Herpetosiphon TaxID=64 RepID=A9B5P0_HERA2)

HSP 1 Score: 59.3 bits (142), Expect = 1.050e-9
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL 111
            A +FVNS VGKELHLRGINARVV  G IRQGD +RK+
Sbjct:  149 AIKFVNSAVGKELHLRGINARVVQPGTIRQGDQVRKI 185          
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Match: A0A1Q7YL01_9BACT (MOSC domain-containing protein n=1 Tax=Acidobacteria bacterium 13_1_20CM_3_53_8 TaxID=1803431 RepID=A0A1Q7YL01_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.070e-9
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    1 AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL 111
            A +FVNS VG+ELHLRGINARVV  GVIR GDA+RK+
Sbjct:  150 AMKFVNSSVGRELHLRGINARVVQPGVIRVGDAVRKV 186          
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Match: A0A538B7E1_9ACTN (MOSC domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538B7E1_9ACTN)

HSP 1 Score: 58.9 bits (141), Expect = 1.500e-9
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1
Query:    1 AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL 111
            A RFVNSEVG+EL+LRGINA+VV +G +R GDA+RKL
Sbjct:  150 ALRFVNSEVGRELNLRGINAKVVVAGTVRPGDAVRKL 186          
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Match: A0A2S8F255_9BACT (MOSC domain-containing protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8F255_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 4.120e-9
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL 111
            A +FVNS VGKELHLRGI ARVV SG++R GD IRKL
Sbjct:  147 ALKFVNSSVGKELHLRGIYARVVKSGIVRVGDEIRKL 183          
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Match: A0A3N5M028_9ACTN (MOSC domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5M028_9ACTN)

HSP 1 Score: 57.4 bits (137), Expect = 6.090e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL 111
            A RFVNSEVG+++HLRGINARVV  G IR GD +RK+
Sbjct:  147 ALRFVNSEVGRQMHLRGINARVVLPGTIRHGDIVRKV 183          
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Match: A0A518C6S8_9BACT (MOSC domain-containing protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518C6S8_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 7.800e-9
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    1 AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL 111
            A +FVNS +GK+LHLRGI ARVV SGV+R GDAIRKL
Sbjct:  287 AVKFVNSAIGKQLHLRGIYARVVKSGVVRVGDAIRKL 323          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107633.1625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A358A3V1_9ACTN2.920e-1383.78MOSC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A3C1K8Q7_9MICO8.460e-1383.78MOSC domain-containing protein n=6 Tax=Actinobacte... [more]
UPI00034D8C988.600e-1386.49hypothetical protein n=1 Tax=Ilumatobacter nonamie... [more]
A0A7X5WPV9_9ACTN2.960e-1078.38MOSC domain-containing protein n=1 Tax=Actinomycet... [more]
A9B5P0_HERA21.050e-975.68MOSC domain-containing protein n=4 Tax=Herpetosiph... [more]
A0A1Q7YL01_9BACT1.070e-975.68MOSC domain-containing protein n=1 Tax=Acidobacter... [more]
A0A538B7E1_9ACTN1.500e-972.97MOSC domain-containing protein n=1 Tax=Actinomycet... [more]
A0A2S8F255_9BACT4.120e-975.68MOSC domain-containing protein n=2 Tax=Pirellulace... [more]
A0A3N5M028_9ACTN6.090e-970.27MOSC domain-containing protein n=1 Tax=Actinomycet... [more]
A0A518C6S8_9BACT7.800e-975.68MOSC domain-containing protein n=1 Tax=Bremerella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107633contigM-pyrifera_M_contig107633:3..116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.1032941-CDS-M-pyrifera_M_contig107633:2..1161622815586.1032941-CDS-M-pyrifera_M_contig107633:2..116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107633 3..116 +
1692277475.734613-CDS-M-pyrifera_M_contig107633:2..1161692277475.734613-CDS-M-pyrifera_M_contig107633:2..116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107633 3..116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107633.1625.1prot_M-pyrifera_M_contig107633.1625.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107633 3..116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107633.1625.1

>prot_M-pyrifera_M_contig107633.1625.1 ID=prot_M-pyrifera_M_contig107633.1625.1|Name=mRNA_M-pyrifera_M_contig107633.1625.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
AHRFVNSEVGKELHLRGINARVVTSGVIRQGDAIRKL*
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mRNA from alignment at M-pyrifera_M_contig107633:3..116+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107633.1625.1 ID=mRNA_M-pyrifera_M_contig107633.1625.1|Name=mRNA_M-pyrifera_M_contig107633.1625.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig107633:3..116+ (Macrocystis pyrifera P11B4 male)
GCCCACCGTTTCGTCAACAGCGAGGTCGGCAAGGAGCTCCACCTTCGGGG CATCAACGCCCGCGTGGTCACGTCCGGTGTAATCCGTCAGGGCGACGCGA TCCGCAAGCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107633:3..116+

>mRNA_M-pyrifera_M_contig107633.1625.1 ID=mRNA_M-pyrifera_M_contig107633.1625.1|Name=mRNA_M-pyrifera_M_contig107633.1625.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig107633:3..116+ (Macrocystis pyrifera P11B4 male)
GCCCACCGTTTCGTCAACAGCGAGGTCGGCAAGGAGCTCCACCTTCGGGG
CATCAACGCCCGCGTGGTCACGTCCGGTGTAATCCGTCAGGGCGACGCGA
TCCGCAAGCTCTGAGCCCACCGTTTCGTCAACAGCGAGGTCGGCAAGGAG
CTCCACCTTCGGGGCATCAACGCCCGCGTGGTCACGTCCGGTGTAATCCG
TCAGGGCGACGCGATCCGCAAGCTCTGA
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