mRNA_M-pyrifera_M_contig107631.1623.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Match: A0A812P900_SYMMI (NPHP3 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812P900_SYMMI) HSP 1 Score: 355 bits (910), Expect = 1.050e-109 Identity = 191/206 (92.72%), Postives = 192/206 (93.20%), Query Frame = 1 Query: 1 RLLRQFKGAARSVAENLFAIRRELASLALKSDLNEQQKQARLDALNRQEQTLIQQLGLADAELNRSEWVTLKQIRAQLPSDSVLVEFVRITPYTIEADDAQAEKHRYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQKGAAQXXXXXXXXXTAATQKRLQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWATLPLEK 618 RLLRQFKGAARSVAENLFAIRRELASLALKSDLNEQQKQARL+ALNRQEQTLIQQLGLADAELNRSEWVTLKQIRAQLPS SVLVEFVRITPYTIEAD AQAEKHRYAAWIIPP GKGRIQTIDLGSASEIEATLRTGLQSIQKGAAQ TAATQK LQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWA LPLEK Sbjct: 1252 RLLRQFKGAARSVAENLFAIRRELASLALKSDLNEQQKQARLEALNRQEQTLIQQLGLADAELNRSEWVTLKQIRAQLPSGSVLVEFVRITPYTIEADGAQAEKHRYAAWIIPPAGKGRIQTIDLGSASEIEATLRTGLQSIQKGAAQTLQTGESQATAATQKLLQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWAALPLEK 1457
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Match: A0A6I6A7N8_9PLAN (CHAT domain-containing protein n=7 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A7N8_9PLAN) HSP 1 Score: 350 bits (898), Expect = 2.780e-109 Identity = 197/206 (95.63%), Postives = 199/206 (96.60%), Query Frame = 1 Query: 1 RLLRQFKGAARSVAENLFAIRRELASLALKSDLNEQQKQARLDALNRQEQTLIQQLGLADAELNRSEWVTLKQIRAQLPSDSVLVEFVRITPYTIEADDAQAEKHRYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQKGAAQXXXXXXXXXTAATQKRLQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWATLPLEK 618 RLLRQFKGAARSVAENLFAIRRELASLALKSDLNEQQKQARLDALNRQEQTLIQQLGLADAELNRSEWVTL+QIRAQLP+DSVLVEFVRITPYTI D A AEKHRYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQKGAA XXXXXXXXXTAATQK LQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWA LPLEK Sbjct: 532 RLLRQFKGAARSVAENLFAIRRELASLALKSDLNEQQKQARLDALNRQEQTLIQQLGLADAELNRSEWVTLEQIRAQLPTDSVLVEFVRITPYTINEDGAHAEKHRYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQKGAAXXXXXXXXXXTAATQKLLQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWAALPLEK 737
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Match: A0A2D5GRG8_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2D5GRG8_9PLAN) HSP 1 Score: 198 bits (503), Expect = 5.300e-55 Identity = 113/206 (54.85%), Postives = 149/206 (72.33%), Query Frame = 1 Query: 1 RLLRQFKGAARSVAENLFAIRRELASLALKSDLNEQQKQARLDALNRQEQTLIQQLGLADAELNRSEWVTLKQIRAQLPSDSVLVEFVRITPYTIEADDAQAEKHRYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQKGAAQXXXXXXXXXTAATQKRLQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWATLPLEK 618 RLLRQF+GAAR AENLF +RR+LAS+ + ++L+E+QKQARLDAL+RQEQ LIQ+LGL+ ++ + +WVTLK ++ Q+P D+V +EF+R+ PY+ + + E RY AWIIPP +I +DLG A+EIE+TLR+ +QSIQ XXXXXXXXX LKPLLPHL +VIL+PDASLWLVPWA LPL++ Sbjct: 527 RLLRQFQGAARVFAENLFEVRRQLASITIGAELSEEQKQARLDALSRQEQDLIQRLGLSGSDNEQGDWVTLKSVQDQVPRDAVFIEFLRVYPYSRQGKQIKRESPRYGAWIIPPGKNQKIIAVDLGLATEIESTLRSAVQSIQSXXXXXXXXXXXXXXXXXXXXXXXXXXXILKPLLPHLKGFDKVILAPDASLWLVPWAALPLKE 732
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Match: A0A7C4U9P7_9BACT (DUF2225 domain-containing protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4U9P7_9BACT) HSP 1 Score: 127 bits (320), Expect = 1.850e-30 Identity = 76/201 (37.81%), Postives = 114/201 (56.72%), Query Frame = 1 Query: 25 AARSVAENLFAIRRELASLALKSDLNEQQK--QARLDALNRQEQTLIQQLGLADAELNRSEWVTLKQIRAQLPSDSVLVEFVRITPYTI--EADDAQAEKHRYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQKGAAQXXXXXXXXXTAATQKRLQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWATLPLE 615 AA + +L +RRELA LA+++ L + +K Q RL AL ++EQ+L QL + L+ + WV L ++R ++P D+V +E R PY + + +D RY AWIIP G I+ IDLG A EIE +++ +++ + A L AL + + PLLPH + ++ I+SPDA+LWLVPWA LPL Sbjct: 558 AAAKILNDLLGVRRELAILAMRAPLKDAEKNHQDRLAALTQREQSLAGQLRQSSGRLSNARWVALPEMRGRIPKDAVYIELARFQPYDLIEKPNDKTWFPARYVAWIIPAVGP--IRLIDLGLADEIEKAIQSARAPLEEARKRIMENGEAEAAAEAHANLAALARLIVTPLLPHTGSFERWIISPDAALWLVPWAALPLN 756
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Match: A0A7C4V6T2_9BACT (CHAT domain-containing protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4V6T2_9BACT) HSP 1 Score: 109 bits (272), Expect = 4.840e-24 Identity = 75/199 (37.69%), Postives = 101/199 (50.75%), Query Frame = 1 Query: 43 ENLFAIRRELASLALKSDLNEQQKQARLDALNRQEQTLIQQLGLADAELNRSE-WVTLKQIRAQLPSDSVLVEFVRITPYTIEADDAQAEKH------RYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQKGAAQXXXXXXXXXTAATQKRLQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWATLPLEK 618 + L A+RR+LA+ + D + + L L QEQ + ++L A +++E WV L +R + DSVLVE R+ P+ D A K RYAAWIIPP GKG ++ +DLG ASEIE+ + Q IQ L AL + L PLLPH + I+SPDA LWL PW+ LPL Sbjct: 489 KQLTAVRRKLANRSF--DGSTKVTPQELAQLTAQEQEISRRLRRASGHQDKAEPWVELDAVRQLMQKDSVLVEIARLRPF----DPASLGKPNPWRQPRYAAWIIPPAGKGAVRLVDLGPASEIESQVSRVRQMIQAAPDLIRSKGERESERELLTHLNALAARILHPLLPHAGHASHWIISPDADLWLAPWSALPLPS 681
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Match: A0A517YGY4_9BACT (Photosystem I assembly protein Ycf3 n=2 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YGY4_9BACT) HSP 1 Score: 101 bits (252), Expect = 2.320e-21 Identity = 66/197 (33.50%), Postives = 107/197 (54.31%), Query Frame = 1 Query: 34 SVAENLFAIRRELASLALKSDLNEQ-QKQARLDALNRQEQTLIQQLGLADAE-LNRSEWVTLKQIRAQLPSDSVLVEFVRITPYTIEADDAQAEKHRYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQK-GAAQXXXXXXXXXTAATQKRLQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWATLPLE 615 ++ L +R +LA + + +E+ ++QA L A ++Q L++ LG A E L WV + IR +P+ ++LV R+ PY + Y AW+IP G+G ++ +DLG A I+A + +++ + GAA AA +K L ++ KPL HL + +++ILSPDA+LWLVPW LP+E Sbjct: 625 ALVAQLRTLRGKLADIVRQPQSDERDRRQAELAA---EQQRLVRLLGQARGEDLTSDPWVDIAGIRKAIPAKTMLVNTARLAPYNYKTKKRGVPL--YVAWLIPSAGEGDVKIVDLGEAEAIDAAVTAFRKAMDEAGAAASASKGEKEAQAAVEKTLASVADLIWKPLAEHLADKEELILSPDAALWLVPWGALPVE 816
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Match: A0A517YGT5_9BACT (Photosystem I assembly protein Ycf3 n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YGT5_9BACT) HSP 1 Score: 100 bits (249), Expect = 5.760e-21 Identity = 58/169 (34.32%), Postives = 94/169 (55.62%), Query Frame = 1 Query: 121 RLDALNRQEQTLIQQLGLADAE-LNRSEWVTLKQIRAQLPSDSVLVEFVRITPYTIEADDAQAEKHRYAAWIIPPTGKGRIQTIDLGSASEIEA---TLRTGLQSIQKGAAQXXXXXXXXXTAATQKRLQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWATLPLE 615 R + L ++Q L++ + A AE L+ WV ++ +R +P+ ++LV VR P+ A Y AW+IP G+G ++ +DLG+A+ ++A T R + ++ G + AA +K L +L KPL HL + +++ILSPDA+LWLVPW LP+E Sbjct: 566 RKEQLEAEQQRLVRLIDQARAEGLSIETWVDIEGVRRSIPAKAMLVNIVRFKPFHFPG--ATPSPILYVAWLIPSAGEGEVKIVDLGNAATMDAAVGTFRKAMSKVEAGGGKESSEKEDH--AAVEKTLTSLADLIWKPLAEHLADKEELILSPDAALWLVPWGALPVE 730
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Match: A0A2D5GRG1_9PLAN (CHAT domain-containing protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2D5GRG1_9PLAN) HSP 1 Score: 99.0 bits (245), Expect = 2.000e-20 Identity = 63/198 (31.82%), Postives = 100/198 (50.51%), Query Frame = 1 Query: 22 GAARSVAENLFAIRRELASLALKSDLNEQQKQARLDALNRQEQTLIQQLGLADAELN-RSEWVTLKQIRAQLPSDSVLVEFVRITPYTIEADDAQA--EKHRYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQKGAAQXXXXXXXXXTAATQKRLQALFQQTLKPLLPHLTNVQQVILSPDASLWLVPWATL 606 G + +A+ L +R +++ + S +Q L L ++E+ L ++LG L R WVT++ +R Q+P +VL+ R + + + + RYAAWIIP TG G IQ IDLG + I+ + + + IQ A +K + L Q+ L+PL P + ++ +ILSPDA LW VPW L Sbjct: 676 GQSAPLAQELRQVRDQISKRTINS--GGKQNTEWLTRLKQREEELQKKLGNVGLNLQKRDPWVTVESVRNQIPKGTVLINIARFHEFNFKTSPQKQYWKPSRYAAWIIPATGAGEIQVIDLGESEPIDREIFSMRKQIQATLKTLPETGEVAAVAEFKKSITELSQRVLRPLEPAIEGMENIILSPDAELWTVPWGAL 871
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Match: A0A518JQ93_9BACT (Photosystem I assembly protein Ycf3 n=1 Tax=Rosistilla carotiformis TaxID=2528017 RepID=A0A518JQ93_9BACT) HSP 1 Score: 95.9 bits (237), Expect = 2.400e-19 Identity = 64/200 (32.00%), Postives = 107/200 (53.50%), Query Frame = 1 Query: 49 LFAIRRELASL--ALKSDLNEQQKQARLDALNRQEQTLIQQLGLADAELNRSE-WVTLKQIRAQLPSDSVLVEFVRITPYT------IEADDAQAEKHRYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQKGAAQXXXXXXXXXTAATQKRLQA---LFQQTLKPLLPHLTNVQQVILSPDASLWLVPWATLPL 612 L A+R L+ L A EQ ++ ++ AL ++Q L +++ A L+ + WV+ Q+R +PS SV+V+ ++ PY +E D + +Y AW+IP +G+G ++ + LG A I+ ++ + + + A + A Q+ A L Q L PL+P+L ++ILSPDA+LWLVPWA LP+ Sbjct: 920 LRAVRSRLSQLSGAAADPAAEQTRREQIAALESEQQDLQRKIASAGTGLSGQDPWVSPGQLRDNIPSGSVMVQIIQFKPYDFRPESKLETDATRWGTPQYVAWVIPASGEGDVKIVPLGDAVSIDKQVQ---EVVNETALKDPEISAEQQRIAVQRLAPATKRLSDQILSPLMPYLDEADELILSPDATLWLVPWAALPV 1116
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Match: A0A518C892_9BACT (Photosystem I assembly protein Ycf3 n=1 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518C892_9BACT) HSP 1 Score: 93.2 bits (230), Expect = 2.030e-18 Identity = 65/201 (32.34%), Postives = 102/201 (50.75%), Query Frame = 1 Query: 31 RSVAENLFAIRRELASLALKS-DLNEQQKQARLDA-LNRQEQTLIQQLG-LADAELNRSEWVTLKQIRAQLPSDSVLVEFVRITPYTIEA--DDAQAEKHRYAAWIIPPTGKGRIQTIDLGSASEIEATLRTGLQSIQKGAAQXXXXXXXXXTAATQKRLQALFQQTLKPLLPHLT-NVQQVILSPDASLWLVPWATLPLE 615 ++ E L RRELA+L + + LN+ + R A L R E+ L QQ+ + + +EWV L+ +R LP V RI +A D+++ RY AW+IP +G+G +Q +DLG A EI++ + + + + + L + QQ KP+ L+ + Q +ILSPD +LWL+PW LP E Sbjct: 780 KNAVEKLSKTRRELATLTMATPSLNQDDARHRAMATLTRSERELSQQVAQIVGGSMRTTEWVELEHVRNDLPKGQTFVNIARIPILDFKAIRDESRWSVERYLAWLIPASGEGEVQLVDLGPAVEIDSQVEQLRSLVNRSDNEQQLT----------EMLDRIAQQIWKPIAEKLSAHTQGIILSPDGALWLLPWNALPTE 970 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107631.1623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig107631.1623.1 >prot_M-pyrifera_M_contig107631.1623.1 ID=prot_M-pyrifera_M_contig107631.1623.1|Name=mRNA_M-pyrifera_M_contig107631.1623.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp RLLRQFKGAARSVAENLFAIRRELASLALKSDLNEQQKQARLDALNRQEQback to top mRNA from alignment at M-pyrifera_M_contig107631:1..618- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig107631.1623.1 ID=mRNA_M-pyrifera_M_contig107631.1623.1|Name=mRNA_M-pyrifera_M_contig107631.1623.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig107631:1..618- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig107631:1..618- >mRNA_M-pyrifera_M_contig107631.1623.1 ID=mRNA_M-pyrifera_M_contig107631.1623.1|Name=mRNA_M-pyrifera_M_contig107631.1623.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1236bp|location=Sequence derived from alignment at M-pyrifera_M_contig107631:1..618- (Macrocystis pyrifera P11B4 male)back to top |