mRNA_M-pyrifera_M_contig107624.1621.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107624.1621.1
Unique NamemRNA_M-pyrifera_M_contig107624.1621.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Match: A0A267H5Q0_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267H5Q0_9PLAT)

HSP 1 Score: 93.2 bits (230), Expect = 1.780e-19
Identity = 48/138 (34.78%), Postives = 81/138 (58.70%), Query Frame = 1
Query:    1 FKSSSSESIVKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYGIPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNATTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIWGS 414
            F +  +  IV +++  GF+ F   +    IS M+  FL  F+    ++YG PAKY  Q    ME+V++   Q WN+ D  F   +GG+  +V +  + N   G  ++L+AN++ +F +APD+ +I++SKS+LGGI+ S
Sbjct:  270 FSTKKTSQIVGKIIGKGFDFFSMQSRAHVISRMNPVFLPRFLGMLDRLYGFPAKYLPQVSAVMEMVQFVSHQDWNKNDFLFDVNSGGHNAWVTVLSNRNED-GTFNFLIANVRQRFRLAPDVLIIKESKSVLGGIYQS 406          
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Match: A0A267H7R2_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267H7R2_9PLAT)

HSP 1 Score: 92.8 bits (229), Expect = 3.360e-19
Identity = 48/138 (34.78%), Postives = 81/138 (58.70%), Query Frame = 1
Query:    1 FKSSSSESIVKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYGIPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNATTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIWGS 414
            F +  +  IV +++  GF+ F   +    IS M+  FL  F+    ++YG PAKY  Q    ME+V++   Q WN+ D  F   +GG+  +V +  + N   G  ++L+AN++ +F +APD+ +I++SKS+LGGI+ S
Sbjct:  441 FSTKKTSQIVGKIIGKGFDFFSMQSRAHVISRMNPVFLPRFLGMLDRLYGFPAKYLPQVSAVMEMVQFVGHQDWNKNDFLFDVNSGGHNAWVTVLSNRNED-GTFNFLIANVRQRFRLAPDVLIIKESKSVLGGIYQS 577          
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Match: A0A267EYY0_9PLAT (Uncharacterized protein (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EYY0_9PLAT)

HSP 1 Score: 87.0 bits (214), Expect = 3.060e-17
Identity = 40/132 (30.30%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   28 VKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYGIPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNATTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIWGSPNL 423
            ++ + ++G+  + +SA MQ I G+DAD  D F A+      I     +    +ME++K++D+  W+  D+ F + +G N +YV + GH +      D+++A+ K+ F +APDI +I++ KS   G+    N+
Sbjct:   87 LQRVTNNGYTHYSQSASMQAIEGVDADSFDAFAAYLTDTLEIKNDKRDGFLASMEIIKFADNTDWSLIDIIFDQDSGSNCKYVCVLGHRDLVHNTYDFMIADFKSSFQLAPDIVLIEERKSYAWGLVQRANI 218          
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Match: A0A1I8F1J1_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8F1J1_9PLAT)

HSP 1 Score: 87.0 bits (214), Expect = 3.690e-17
Identity = 40/132 (30.30%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   28 VKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYGIPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNATTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIWGSPNL 423
            ++ + ++G+  + +SA MQ I G+DAD  D F A+      I     +    +ME++K++D+  W+  D+ F + +G N +YV + GH +      D+++A+ K+ F +APDI +I++ KS   G+    N+
Sbjct:  117 LQRVTNNGYTHYSQSASMQAIEGVDADSFDAFAAYLTDTLEIKNDKRDGFLASMEIIKFADNTDWSLIDIIFDQDSGSNCKYVCVLGHRDLAHNTYDFMIADFKSSFQLAPDIVLIEERKSYAWGLVQRANI 248          
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Match: A0A814NTD2_9BILA (Hypothetical protein n=5 Tax=Rotaria sordida TaxID=392033 RepID=A0A814NTD2_9BILA)

HSP 1 Score: 73.6 bits (179), Expect = 1.820e-12
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    1 FKSSSSESIVKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYGIPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNATTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIWGS 414
            FKSSSS +I + ++  GF  F + + + K   + AD    FI   I  Y +P+K +      M  + YSD   W+R D  +S    GN R + +  + ++ T    + + +I A + +APD+ +IQ SKS LGG+W S
Sbjct:  502 FKSSSSTTITR-IVRFGFTYFSQKSTVLKAIDIPADKATDFINAVIIDYNLPSKGS-----FMLGLTYSDDFAWDRIDYLYSPSNNGNYRSLTLFKNGDSLTNTASFFIVDINADWQLAPDLLLIQTSKSYLGGLWES 633          
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Match: A0A819CN56_9BILA (Hypothetical protein n=10 Tax=Rotaria TaxID=231623 RepID=A0A819CN56_9BILA)

HSP 1 Score: 68.9 bits (167), Expect = 7.380e-11
Identity = 39/136 (28.68%), Postives = 72/136 (52.94%), Query Frame = 1
Query:    1 FKSSSSESIVKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYGIPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNATTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIW 408
            FKSSSS +I+  +M  GF  F++   + K+  M A+ +  F+   I  Y +P+    Q  + + L  YSD   W+  +  +S    G  R + +  + ++ T    + + +I A + +APD+ +++K KS LGG++
Sbjct:  471 FKSSSSSTIISRIMQAGFKHFDQKTRILKVLNMPAERVTEFVNAIIMDYNLPS----QGSFMLGLT-YSDDFAWDYVEYLYSPNQNGIYRSLTLFKNGDSRTNTASFYIVDINANWEIAPDLLIVEKRKSRLGGLF 601          
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Match: A0A820ZHJ2_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820ZHJ2_9BILA)

HSP 1 Score: 68.2 bits (165), Expect = 1.380e-10
Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 FKSSSSESIVKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYGIPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNATTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIWGS 414
            FKSSSS +I + ++  GF  F E + + K   + AD    FI   I  Y +P+K +      M  + YSD   W+R D  +S    G  R + +  + ++ T    + + ++ A + +APD+ +IQ SKS LGG++ S
Sbjct:  501 FKSSSSTTITR-IVRFGFTYFSEKSTVLKAIDIPADRATEFINAVIIDYNLPSKGS-----FMLGLTYSDDFAWDRIDYLYSPSNNGTYRSLTLFKNGDSLTNTASFFIVDVDANWQLAPDLLLIQTSKSYLGGLFQS 632          
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Match: A0A818VPC5_9BILA (Hypothetical protein n=3 Tax=Rotaria socialis TaxID=392032 RepID=A0A818VPC5_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 3.110e-10
Identity = 40/136 (29.41%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 FKSSSSESIVKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYGIPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNATTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIW 408
            FKSSSS +I+   M  GF  F++   + K+  M A+    F+   I  Y +P+    Q  + + L  YSD   W+  +  +S    G  R + +  + ++ T    + + +I A + +APD+ +I+K KS LGG++
Sbjct:  133 FKSSSSSTIISRTMQAGFKHFDQKTRILKVLNMPAERATEFVNAIIMDYNLPS----QGSFMLGLT-YSDDFAWDYVEYLYSPDQNGIYRSLTLFKNGDSRTNTASFYIVDINADWEIAPDLLIIEKRKSRLGGLF 263          
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Match: A0A820ITV4_9BILA (Hypothetical protein n=5 Tax=Rotaria socialis TaxID=392032 RepID=A0A820ITV4_9BILA)

HSP 1 Score: 67.0 bits (162), Expect = 3.460e-10
Identity = 40/136 (29.41%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 FKSSSSESIVKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYGIPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNATTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIW 408
            FKSSSS +I+   M  GF  F++   + K+  M A+    F+   I  Y +P+    Q  + + L  YSD   W+  +  +S    G  R + +  + ++ T    + + +I A + +APD+ +I+K KS LGG++
Sbjct:  464 FKSSSSSTIINRTMQAGFKHFDQKTRILKVLNMPAERATEFVNAIIMDYNLPS----QGSFMLGLT-YSDDFAWDYVEYLYSPDQNGIYRSLTLFKNGDSRTNTASFYIVDINANWEIAPDLLIIEKRKSRLGGLF 594          
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Match: A0A818VFJ7_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818VFJ7_9BILA)

HSP 1 Score: 65.1 bits (157), Expect = 1.630e-9
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 1
Query:    1 FKSSSSESIVKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYGIPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNATTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIWGS 414
            FKSSSS +I + +   GF  F + + + K   + AD    FI   I  Y +P+K +      M  + YS    W+R D  +S    G  R + +  + ++TT    + + +I A + +APD+ +IQ SKS LGG++ S
Sbjct:  501 FKSSSSTTITRTVRF-GFTYFSQKSTVLKAIDIPADKATEFINAVIIDYNLPSKGS-----FMLGLTYSADFAWDRIDFLYSPANNGIYRSLTLFKNGDSTTNTASFFIVDIDAGWQLAPDLLIIQTSKSYLGGLFES 632          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107624.1621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A267H5Q0_9PLAT1.780e-1934.78Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A267H7R2_9PLAT3.360e-1934.78Uncharacterized protein n=2 Tax=Macrostomum lignan... [more]
A0A267EYY0_9PLAT3.060e-1730.30Uncharacterized protein (Fragment) n=3 Tax=Macrost... [more]
A0A1I8F1J1_9PLAT3.690e-1730.30Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A814NTD2_9BILA1.820e-1233.33Hypothetical protein n=5 Tax=Rotaria sordida TaxID... [more]
A0A819CN56_9BILA7.380e-1128.68Hypothetical protein n=10 Tax=Rotaria TaxID=231623... [more]
A0A820ZHJ2_9BILA1.380e-1031.88Hypothetical protein n=4 Tax=Rotaria sp. Silwood2 ... [more]
A0A818VPC5_9BILA3.110e-1029.41Hypothetical protein n=3 Tax=Rotaria socialis TaxI... [more]
A0A820ITV4_9BILA3.460e-1029.41Hypothetical protein n=5 Tax=Rotaria socialis TaxI... [more]
A0A818VFJ7_9BILA1.630e-931.88Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107624contigM-pyrifera_M_contig107624:9..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog227086.JGI_V11_70582
Hectar predicted targeting categoryother localisation
EggNOG OGs2EU5S@1,2SWD8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.9677806-CDS-M-pyrifera_M_contig107624:8..4371622815585.9677806-CDS-M-pyrifera_M_contig107624:8..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107624 9..437 -
1692277475.6769974-CDS-M-pyrifera_M_contig107624:8..4371692277475.6769974-CDS-M-pyrifera_M_contig107624:8..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107624 9..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107624.1621.1prot_M-pyrifera_M_contig107624.1621.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107624 9..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107624.1621.1

>prot_M-pyrifera_M_contig107624.1621.1 ID=prot_M-pyrifera_M_contig107624.1621.1|Name=mRNA_M-pyrifera_M_contig107624.1621.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
FKSSSSESIVKELMSDGFNKFEESADMQKISGMDADFLDTFIAHAIQVYG
IPAKYAEQARWAMELVKYSDSQTWNRFDLAFSEGTGGNMRYVVIRGHNNA
TTGKTDWLVANIKAKFSMAPDIRVIQKSKSILGGIWGSPNLG*
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mRNA from alignment at M-pyrifera_M_contig107624:9..437-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107624.1621.1 ID=mRNA_M-pyrifera_M_contig107624.1621.1|Name=mRNA_M-pyrifera_M_contig107624.1621.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig107624:9..437- (Macrocystis pyrifera P11B4 male)
TTCAAGTCGTCCTCGTCCGAGTCCATCGTGAAGGAGCTGATGAGCGACGG GTTCAACAAGTTCGAGGAGAGCGCGGACATGCAGAAGATCAGCGGCATGG ACGCCGACTTCCTGGACACGTTCATCGCGCACGCCATCCAGGTGTACGGC ATCCCGGCCAAGTACGCTGAGCAGGCGCGCTGGGCGATGGAGCTGGTGAA GTACTCGGACTCGCAGACGTGGAACCGCTTCGACCTGGCGTTCTCTGAGG GCACCGGCGGCAACATGCGCTACGTGGTGATCCGGGGCCACAACAACGCG ACGACGGGCAAGACTGACTGGCTGGTGGCGAACATCAAGGCCAAGTTCAG CATGGCTCCGGACATCAGGGTGATCCAGAAGTCGAAGAGCATCCTGGGCG GTATCTGGGGCTCACCAAACTTGGGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107624:9..437-

>mRNA_M-pyrifera_M_contig107624.1621.1 ID=mRNA_M-pyrifera_M_contig107624.1621.1|Name=mRNA_M-pyrifera_M_contig107624.1621.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig107624:9..437- (Macrocystis pyrifera P11B4 male)
TTCAAGTCGTCCTCGTCCGAGTCCATCGTGAAGGAGCTGATGAGCGACGG
GTTCAACAAGTTCGAGGAGAGCGCGGACATGCAGAAGATCAGCGGCATGG
ACGCCGACTTCCTGGACACGTTCATCGCGCACGCCATCCAGGTGTACGGC
ATCCCGGCCAAGTACGCTGAGCAGGCGCGCTGGGCGATGGAGCTGGTGAA
GTACTCGGACTCGCAGACGTGGAACCGCTTCGACCTGGCGTTCTCTGAGG
GCACCGGCGGCAACATGCGCTACGTGGTGATCCGGGGCCACAACAACGCG
ACGACGGGCAAGACTGACTGGCTGGTGGCGAACATCAAGGCCAAGTTCAG
CATGGCTCCGGACATCAGGGTGATCCAGAAGTCGAAGAGCATCCTGGGCG
GTATCTGGGGCTCACCAAACTTGGGTTGATTCAAGTCGTCCTCGTCCGAG
TCCATCGTGAAGGAGCTGATGAGCGACGGGTTCAACAAGTTCGAGGAGAG
CGCGGACATGCAGAAGATCAGCGGCATGGACGCCGACTTCCTGGACACGT
TCATCGCGCACGCCATCCAGGTGTACGGCATCCCGGCCAAGTACGCTGAG
CAGGCGCGCTGGGCGATGGAGCTGGTGAAGTACTCGGACTCGCAGACGTG
GAACCGCTTCGACCTGGCGTTCTCTGAGGGCACCGGCGGCAACATGCGCT
ACGTGGTGATCCGGGGCCACAACAACGCGACGACGGGCAAGACTGACTGG
CTGGTGGCGAACATCAAGGCCAAGTTCAGCATGGCTCCGGACATCAGGGT
GATCCAGAAGTCGAAGAGCATCCTGGGCGGTATCTGGGGCTCACCAAACT
TGGGTTGA
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