mRNA_M-pyrifera_M_contig107623.1619.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107623.1619.1
Unique NamemRNA_M-pyrifera_M_contig107623.1619.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Match: A0A7Y1ZXH4_9ACTN (Branched-chain amino acid ABC transporter permease n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZXH4_9ACTN)

HSP 1 Score: 212 bits (539), Expect = 6.070e-67
Identity = 109/152 (71.71%), Postives = 129/152 (84.87%), Query Frame = 1
Query:    1 AVSGLMLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRYGYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWPRLADRRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVRFVGVP 456
            A++GL+LNVRSLAFG+V+APALTGA+WQRA MSQLMIDE+TAV TA D++R RRYGYL  G+GVFVVWNATT+ GHL+ S AGDL+  LGLDAAGPAAFLALLWPRL D RQL  A+ GG VAV ++P TPPGVPIL +M+G++A R  GVP
Sbjct:   78 AIAGLLLNVRSLAFGVVLAPALTGAIWQRAAMSQLMIDESTAVATAQDELRWRRYGYLVAGMGVFVVWNATTVGGHLLFSGAGDLITDLGLDAAGPAAFLALLWPRLRDHRQLRTAVVGGIVAVLLVPLTPPGVPILAAMIGVLAGR-PGVP 228          
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Match: A0A6C7EHP2_ILUCY (AzlC family protein n=2 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A6C7EHP2_ILUCY)

HSP 1 Score: 202 bits (514), Expect = 2.590e-63
Identity = 104/149 (69.80%), Postives = 123/149 (82.55%), Query Frame = 1
Query:    1 AVSGLMLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRYGYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWPRLADRRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVRFV 447
            A++GL+LNVRSLAFG++MAPAL GA WQRA MSQLMIDE+TAVGTA D+ R RRYGYLA G+GVFVVWN TTI+G +V S AGDL++ LGLD AGPAAFLALLWPRL+ R QLAVA+ G  +A+ ++P  P GVPIL SMV + A RFV
Sbjct:   67 AIAGLLLNVRSLAFGVIMAPALAGAWWQRAWMSQLMIDESTAVGTAQDERRWRRYGYLAAGIGVFVVWNLTTIVGFVVFSEAGDLIDDLGLDVAGPAAFLALLWPRLSQRPQLAVAVTGALIALVVVPIAPAGVPILASMVAVFAARFV 215          
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Match: A0A524MYH3_9ACTN (Branched-chain amino acid ABC transporter permease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524MYH3_9ACTN)

HSP 1 Score: 177 bits (450), Expect = 3.410e-53
Identity = 90/147 (61.22%), Postives = 113/147 (76.87%), Query Frame = 1
Query:    1 AVSGLMLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRYGYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWPRLADRRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVR 441
            A++GL+LNVRSLAFG++MA AL G  W+RA MS LMIDE+TAVG A +++  RRYGYL  G+GVFVVWN TTI+G +V S+AG ++  LGLDAA PAAFLALLWPRL+   Q   A+ G  +AV +IP+T PGVPIL SM+G+   R
Sbjct:   96 AIAGLLLNVRSLAFGVIMADALAGPWWKRAAMSPLMIDESTAVGAAQEELHWRRYGYLVAGIGVFVVWNLTTIVGFVVFSDAGSMITDLGLDAAAPAAFLALLWPRLSSPPQRRTAITGALIAVVLIPFTAPGVPILASMLGVAVTR 242          
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Match: A0A349B431_9ACTN (Branched-chain amino acid ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B431_9ACTN)

HSP 1 Score: 160 bits (406), Expect = 1.010e-46
Identity = 86/155 (55.48%), Postives = 115/155 (74.19%), Query Frame = 1
Query:    7 SGLMLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRYGYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWPRLAD---RRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVRFV-GVPT 459
            +GL+LN+RSLAFG+++AP+LTG +  RAL++QL+IDE+TAV T  D+ R +RYG+LAGG+ VF VWN TT+ G L++S     +  LG DAA PAAFLALLWPRL     R    +A+AGG VA A +P TPPG+PILL+ +G++A R   GVP+
Sbjct:   87 AGLLLNIRSLAFGVLLAPSLTGRVGTRALLAQLVIDESTAVATVQDEPRWQRYGFLAGGIAVFAVWNLTTVAGVLLASVDDGFITDLGFDAAAPAAFLALLWPRLVGDGGREGRRIAIAGGLVAAAAVPLTPPGIPILLAGLGVLAARTTRGVPS 241          
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Match: A0A7Y2N6R1_9ACTN (AzlC family ABC transporter permease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N6R1_9ACTN)

HSP 1 Score: 159 bits (403), Expect = 3.120e-46
Identity = 84/146 (57.53%), Postives = 105/146 (71.92%), Query Frame = 1
Query:    4 VSGLMLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRYGYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWPRLADRRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVR 441
            V+G +L +RSLAFG+VMAPAL G  W RA +SQLMIDE+ AVG    D+R RR+GYLAGG+GVFV WN  TILG  +   AGDLV +LG+DA  PAAFLALLWPRL+D +Q  +A  G  VA+   P  PPG+PI+L+   +  +R
Sbjct:   86 VAGGLLALRSLAFGVVMAPALWGPFWWRAAVSQLMIDESLAVGALQTDLRWRRFGYLAGGIGVFVPWNLFTILGFTIFGGAGDLVTSLGIDATIPAAFLALLWPRLSDPKQRLIAGVGAVVAIVGAPLLPPGIPIVLAAAAVALLR 231          
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Match: A0A7Y2DK03_9ACTN (AzlC family ABC transporter permease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DK03_9ACTN)

HSP 1 Score: 158 bits (400), Expect = 7.690e-46
Identity = 83/145 (57.24%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    7 SGLMLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRYGYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWPRLADRRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVR 441
            +G +LN+RS+AFG+VMAPAL G+LW R ++SQLMIDE+TAVG+A  D+  RRYGYLAGGLGVFV+WN  TILG  V  +AG+LV   G+DA  PA+FLALLWPRL    Q  + +AG  +A+   P  P GVPI+ S + +V  R
Sbjct:   84 AGALLNMRSMAFGVVMAPALKGSLWWRGVVSQLMIDESTAVGSAQKDLHWRRYGYLAGGLGVFVLWNLFTILGFTVLGSAGELVVTYGIDATIPASFLALLWPRLDSVEQRVLMVAGAAIALLGAPLLPAGVPIVASALAVVIYR 228          
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Match: A0A2E3XLT7_9BACT (Branched-chain amino acid ABC transporter permease n=5 Tax=Bacteria TaxID=2 RepID=A0A2E3XLT7_9BACT)

HSP 1 Score: 144 bits (362), Expect = 3.220e-40
Identity = 76/145 (52.41%), Postives = 105/145 (72.41%), Query Frame = 1
Query:    7 SGLMLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRYGYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWPRLADRRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVR 441
            +GL+LN+RSLAFG+ MAP+L G+   RA +SQLMIDE+TA+G++     LRRYGYL GGL VFV+WNATT++G  V S A  L+  LG+DA  PAAFL L+W +L + +  AVA+ G   A+ +IP+TP G+P++ +   I+ VR
Sbjct:   75 AGLLLNLRSLAFGVSMAPSLKGSFLWRAGVSQLMIDESTAIGSSQATHELRRYGYLWGGLSVFVLWNATTLIGVSVLSEAESLITDLGIDATIPAAFLGLIWNKLENAKHRAVAVIGAITALILIPFTPAGIPVIAAASAIIWVR 219          
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Match: A0A2E9LEQ3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E9LEQ3_9ACTN)

HSP 1 Score: 144 bits (362), Expect = 3.220e-40
Identity = 76/145 (52.41%), Postives = 104/145 (71.72%), Query Frame = 1
Query:    7 SGLMLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRYGYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWPRLADRRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVR 441
            +GL+LN+RSLAFG+ MAP+L G+L  RA +SQLMIDE+TA+G++ +   LRRYGYL GGL VFV+WN TT++G  + +NA  LV  LG+DA  PAAFL L+W +L       VA  G  +A+ +IP+TP G+P++ S   I+ VR
Sbjct:   75 AGLLLNLRSLAFGVSMAPSLKGSLLWRAGISQLMIDESTAIGSSQNTHELRRYGYLWGGLSVFVLWNVTTLIGVSLLANADSLVTDLGIDATIPAAFLGLIWNKLEHATHRTVAFIGSLLAMILIPFTPAGIPVIASAFSIIWVR 219          
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Match: A0A2E4XI33_9ACTN (Branched-chain amino acid ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4XI33_9ACTN)

HSP 1 Score: 142 bits (357), Expect = 1.730e-39
Identity = 72/146 (49.32%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    4 VSGLMLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRYGYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWPRLADRRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVR 441
            ++GL+LN+RSLAFG+ MAP+L G+   RAL SQLMIDEATAVG+A +   LRRYGY+  GL VFV WN  T +G  + S  G L+E LG+DA  PAAFL L+WP+L+ +    +A  G  +A  ++P+ PPG+P++ +   ++ +R
Sbjct:   74 IAGLLLNLRSLAFGVAMAPSLQGSFLWRALTSQLMIDEATAVGSAQESHSLRRYGYIWAGLSVFVFWNFMTWVGVTLLSGTGSLIEDLGIDATIPAAFLGLVWPKLSSKDHRIIAGIGAALAFLLVPFVPPGIPVIAAASAVLFLR 219          
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Match: A0A2E7HUQ2_9ACTN (Branched-chain amino acid ABC transporter permease n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7HUQ2_9ACTN)

HSP 1 Score: 141 bits (355), Expect = 3.460e-39
Identity = 74/146 (50.68%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    4 VSGLMLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRYGYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWPRLADRRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVR 441
            V+GL+ N+RSLAFG+VMAP+L G+L  RAL SQLMIDEATAVG++ D   LRRYGYL  GL VFV+WN  T +G  + S  G L+E LG+DA  PAAFL L+WP+ +      +A+ G  +A  ++P  PPG+P++ +   ++ +R
Sbjct:   74 VAGLLXNLRSLAFGVVMAPSLQGSLLWRALTSQLMIDEATAVGSSQDSNALRRYGYLWAGLSVFVLWNFMTWVGVSLLSGTGTLIEDLGIDATIPAAFLGLVWPKFSSNDHRKLAVIGILLAFILVPLVPPGIPVIAAASAVIFLR 219          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107623.1619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y1ZXH4_9ACTN6.070e-6771.71Branched-chain amino acid ABC transporter permease... [more]
A0A6C7EHP2_ILUCY2.590e-6369.80AzlC family protein n=2 Tax=Ilumatobacter coccineu... [more]
A0A524MYH3_9ACTN3.410e-5361.22Branched-chain amino acid ABC transporter permease... [more]
A0A349B431_9ACTN1.010e-4655.48Branched-chain amino acid ABC transporter permease... [more]
A0A7Y2N6R1_9ACTN3.120e-4657.53AzlC family ABC transporter permease n=1 Tax=Acidi... [more]
A0A7Y2DK03_9ACTN7.690e-4657.24AzlC family ABC transporter permease n=1 Tax=Acidi... [more]
A0A2E3XLT7_9BACT3.220e-4052.41Branched-chain amino acid ABC transporter permease... [more]
A0A2E9LEQ3_9ACTN3.220e-4052.41Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2E4XI33_9ACTN1.730e-3949.32Branched-chain amino acid ABC transporter permease... [more]
A0A2E7HUQ2_9ACTN3.460e-3950.68Branched-chain amino acid ABC transporter permease... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107623contigM-pyrifera_M_contig107623:3..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score199.5
Seed ortholog evalue1.1e-48
Seed eggNOG ortholog1313172.YM304_41710
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.branched-chain amino acid
EggNOG OGs2GN6R@201174,COG1296@1,COG1296@2
COG Functional cat.E
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size444
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.8716545-UTR-M-pyrifera_M_contig107623:2..171622815585.8716545-UTR-M-pyrifera_M_contig107623:2..17Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107623 3..17 +
1692277475.6434035-UTR-M-pyrifera_M_contig107623:2..171692277475.6434035-UTR-M-pyrifera_M_contig107623:2..17Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107623 3..17 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.8888032-CDS-M-pyrifera_M_contig107623:17..4611622815585.8888032-CDS-M-pyrifera_M_contig107623:17..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107623 18..461 +
1692277475.6555357-CDS-M-pyrifera_M_contig107623:17..4611692277475.6555357-CDS-M-pyrifera_M_contig107623:17..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107623 18..461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107623.1619.1prot_M-pyrifera_M_contig107623.1619.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107623 18..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107623.1619.1

>prot_M-pyrifera_M_contig107623.1619.1 ID=prot_M-pyrifera_M_contig107623.1619.1|Name=mRNA_M-pyrifera_M_contig107623.1619.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
MLNVRSLAFGIVMAPALTGALWQRALMSQLMIDEATAVGTAVDDVRLRRY
GYLAGGLGVFVVWNATTILGHLVSSNAGDLVEALGLDAAGPAAFLALLWP
RLADRRQLAVALAGGCVAVAMIPWTPPGVPILLSMVGIVAVRFVGVPT
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mRNA from alignment at M-pyrifera_M_contig107623:3..461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107623.1619.1 ID=mRNA_M-pyrifera_M_contig107623.1619.1|Name=mRNA_M-pyrifera_M_contig107623.1619.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig107623:3..461+ (Macrocystis pyrifera P11B4 male)
GCGGTCTCCGGGTTGATGTTGAACGTGCGATCGTTGGCCTTCGGGATCGT GATGGCGCCGGCGCTGACCGGAGCGCTCTGGCAGCGGGCGCTGATGTCGC AGCTGATGATCGACGAGGCGACCGCGGTCGGAACGGCCGTCGACGACGTC CGACTGCGCCGCTACGGGTACCTCGCCGGGGGCCTCGGCGTGTTCGTGGT GTGGAACGCGACGACGATTCTCGGACACCTCGTCTCCAGCAACGCCGGCG ACCTCGTCGAAGCTCTCGGCCTCGACGCCGCGGGACCCGCGGCGTTCCTC GCGCTGCTGTGGCCGCGGCTCGCCGACCGACGCCAGCTCGCCGTCGCGCT CGCGGGTGGGTGTGTCGCCGTGGCGATGATCCCGTGGACTCCGCCCGGGG TTCCGATCCTGCTGTCGATGGTCGGCATCGTCGCCGTTCGCTTCGTCGGA GTCCCCACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107623:3..461+

>mRNA_M-pyrifera_M_contig107623.1619.1 ID=mRNA_M-pyrifera_M_contig107623.1619.1|Name=mRNA_M-pyrifera_M_contig107623.1619.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig107623:3..461+ (Macrocystis pyrifera P11B4 male)
ATGTTGAACGTGCGATCGTTGGCCTTCGGGATCGTGATGGCGCCGGCGCT
GACCGGAGCGCTCTGGCAGCGGGCGCTGATGTCGCAGCTGATGATCGACG
AGGCGACCGCGGTCGGAACGGCCGTCGACGACGTCCGACTGCGCCGCTAC
GGGTACCTCGCCGGGGGCCTCGGCGTGTTCGTGGTGTGGAACGCGACGAC
GATTCTCGGACACCTCGTCTCCAGCAACGCCGGCGACCTCGTCGAAGCTC
TCGGCCTCGACGCCGCGGGACCCGCGGCGTTCCTCGCGCTGCTGTGGCCG
CGGCTCGCCGACCGACGCCAGCTCGCCGTCGCGCTCGCGGGTGGGTGTGT
CGCCGTGGCGATGATCCCGTGGACTCCGCCCGGGGTTCCGATCCTGCTGT
CGATGGTCGGCATCGTCGCCGTTCGCTTCGTCGGAGTCCCCACGATGTTG
AACGTGCGATCGTTGGCCTTCGGGATCGTGATGGCGCCGGCGCTGACCGG
AGCGCTCTGGCAGCGGGCGCTGATGTCGCAGCTGATGATCGACGAGGCGA
CCGCGGTCGGAACGGCCGTCGACGACGTCCGACTGCGCCGCTACGGGTAC
CTCGCCGGGGGCCTCGGCGTGTTCGTGGTGTGGAACGCGACGACGATTCT
CGGACACCTCGTCTCCAGCAACGCCGGCGACCTCGTCGAAGCTCTCGGCC
TCGACGCCGCGGGACCCGCGGCGTTCCTCGCGCTGCTGTGGCCGCGGCTC
GCCGACCGACGCCAGCTCGCCGTCGCGCTCGCGGGTGGGTGTGTCGCCGT
GGCGATGATCCCGTGGACTCCGCCCGGGGTTCCGATCCTGCTGTCGATGG
TCGGCATCGTCGCCGTTCGCTTCGTCGGAGTCCCCACG
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