mRNA_M-pyrifera_M_contig107604.1615.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107604.1615.1
Unique NamemRNA_M-pyrifera_M_contig107604.1615.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Match: A0A7S4ISL8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ISL8_9EUKA)

HSP 1 Score: 160 bits (404), Expect = 1.430e-43
Identity = 77/137 (56.20%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    1 RGFEIMFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEGNTPFDPDTIHSQFNHIFIVVEPHKIINGSCTHYRVEICCKPGVRSFRPYLVAPGIYPKNMDFLELLLLKSATRTTLLTEGAVVNGERAAMYAPDFR 411
            RG EIMFHVST+IP++P D QQVERKRHLGND+VVI+FKEG+ PFDP  IHSQFNH+F+VV+P KI     T YRVE C KPGV  F+PY ++PG+Y    +F ++ L K            ++N +RA+MYA  FR
Sbjct:  452 RGCEIMFHVSTLIPFYPKDTQQVERKRHLGNDIVVIIFKEGDEPFDPICIHSQFNHVFVVVKPLKIAKK--TFYRVEWCAKPGVPPFKPYDISPGVYESGPEFRDIFLTK------------LLNAQRASMYAKTFR 574          
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Match: A0A6U1TK01_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1TK01_9EUKA)

HSP 1 Score: 154 bits (390), Expect = 2.060e-41
Identity = 75/137 (54.74%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    1 RGFEIMFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEGNTPFDPDTIHSQFNHIFIVVEPHKIINGSCTHYRVEICCKPGVRSFRPYLVAPGIYPKNMDFLELLLLKSATRTTLLTEGAVVNGERAAMYAPDFR 411
            +G EIMFHVST+IP++P D QQVERKRHLGND+VV+VFKEG+ PFDP  I SQFNH+F+VV+P  I  G  THY VE C KPGV  F+PY  +P +Y   +DF E  + K            ++N +RAAM A DF+
Sbjct:  489 KGCEIMFHVSTLIPFYPKDEQQVERKRHLGNDIVVVVFKEGDVPFDPLCIRSQFNHVFVVVQPVHIEEGK-THYAVEWCAKPGVPPFKPYETSPPLYESGVDFQERFITK------------LLNAQRAAMSAKDFQ 612          
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Match: A0A2P6MPE4_9EUKA (Rap-GAP domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MPE4_9EUKA)

HSP 1 Score: 150 bits (379), Expect = 1.770e-39
Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 1
Query:    1 RGFEIMFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEGNTPFDPDTIHSQFNHIFIVVEPHKIINGSCTHYRVEICCKPGVRSFRPYLVAPGIYPKNMDFLELLLLKSATRTTLLTEGAVVNGERAAMYAPDFRLR 417
            + FEIM+HVST++P+ P D Q+VERKRHLGNDVV I+FKEGNTPFDP T+ + +NH+FIVV   K   G  T Y+V I  K GV  F P+L  P IY KN +F E L+ K  T +       V+NGERAAMYA DF+ +
Sbjct:  583 KDFEIMYHVSTLLPFQPDDLQRVERKRHLGNDVVQIMFKEGNTPFDPLTLRTHYNHVFIVVSVAKKEKGK-TFYKVAIANKAGVPPFGPFLHYPPIYEKNEEFYEFLITKCETSSLSQLTRPVINGERAAMYATDFKTK 720          
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Match: L8GR08_ACACA (GTPaseactivating protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GR08_ACACA)

HSP 1 Score: 140 bits (354), Expect = 2.270e-37
Identity = 73/137 (53.28%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    1 RGFEIMFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEG-NTPFDPDTIHSQFNHIFIVVEPHKIINGSCTHYRVEICCKPGVRSFRPYLVAPGIYPKNMDFLELLLLKSATRTTLLTEGAVVNGERAAMYAPDF 408
            RG EIMFHVST++P+FP D QQVERKRHLGNDVV+++F+EG N  F P TI SQFNH++IV+ P K   G  T YRV + CK GV+ F P L  P ++ +   F E LL K            +VNGERAA +A DF
Sbjct:  256 RGQEIMFHVSTLLPFFPEDPQQVERKRHLGNDVVIVIFREGPNDQFSPLTIRSQFNHVYIVITPEKK-EGKKTCYRVAVVCKQGVKPFGPSLPEPALFRRGRKFREFLLTK------------MVNGERAAFHAKDF 379          
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Match: L8GG36_ACACA (RapGAP/RanGAP domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GG36_ACACA)

HSP 1 Score: 130 bits (327), Expect = 1.230e-34
Identity = 63/138 (45.65%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 RGFEIMFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEGNTPFDPDTIHSQFNHIFIVVEPHKII-NGSCTHYRVEICCKPGVRSFRPYLVAPGIYPKNMDFLELLLLKSATRTTLLTEGAVVNGERAAMYAPDFR 411
            + FEIMFHVST++P+ P D QQ+ERKRHLGND+VVI+F +G+TPF P  + S+FNH F+VV+PH    +   T Y++    K GVRS+ P L  P ++ KN  F    + K            +VN ERA+++AP F+
Sbjct:  122 KDFEIMFHVSTLLPFNPADEQQLERKRHLGNDIVVIIFVDGSTPFSPSLLKSEFNHTFVVVQPHASPQDDGKTFYKIGFADKVGVRSYAPLLPDPPVFEKNQAFRHWFMTK------------LVNAERASLHAPGFK 247          
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Match: UPI000644F6B2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F6B2)

HSP 1 Score: 130 bits (327), Expect = 1.780e-32
Identity = 63/141 (44.68%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    1 RGFEIMFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEGNTPFDPDTIHSQFNHIFIVVEPHKIINGSCTH--YRVEICCKPGVRSFRPYLVAPGIYPKNMDFLELLLLKSATRTTLLTEGAVVNGERAAMYAPDFRLR 417
            RGFE+MFHV+TM+P+  MD QQVE+KRH+GND+VVIVFKEG+ PF+P+ I S FNH+FIVV+   + + +  +  Y++ I  K G++   PY+  PG Y  N  F + LL K            ++N E A+  AP F ++
Sbjct:  591 RGFEVMFHVATMLPFSQMDSQQVEKKRHIGNDIVVIVFKEGDRPFNPNVIQSDFNHVFIVVQVDAVASRTMGNKRYKISIVYKEGIQPSHPYIEYPGTYEANASFKDYLLCK------------LINSECASYDAPSFMIK 719          
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Match: F0ZJW2_DICPU (Rap-GAP domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZJW2_DICPU)

HSP 1 Score: 130 bits (326), Expect = 2.490e-32
Identity = 66/139 (47.48%), Postives = 88/139 (63.31%), Query Frame = 1
Query:    1 RGFEIMFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEGNTPFDPDTIHSQFNHIFIVVEPHKIINGSCTHYRVEICCKPGVRSFRPYLVAPGIYPKNMDFLELLLLKSATRTTLLTEGAVVNGERAAMYAPDFRLR 417
            +GFEIMFHV+TM+PY  +D QQV++KRHLGND+VVIV+KEG+  FDP  I S FNH+FIVV P   +N     Y++ I  K GV    PYL  P I+ ++ DF E LL K            ++N E A+  AP F+++
Sbjct:  613 QGFEIMFHVATMLPYSELDKQQVDKKRHLGNDIVVIVYKEGDQLFDPKVIKSDFNHVFIVVSPVDKVNNK--KYKLSIVYKDGVEPSTPYLPNPSIWEQSNDFKEFLLSK------------LINSECASYQAPSFKIK 737          
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Match: D3BRC5_POLPP (Rap-GAP domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BRC5_POLPP)

HSP 1 Score: 127 bits (319), Expect = 2.030e-31
Identity = 64/141 (45.39%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    1 RGFEIMFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEGNTPFDPDTIHSQFNHIFIVVEPHK--IINGSCTHYRVEICCKPGVRSFRPYLVAPGIYPKNMDFLELLLLKSATRTTLLTEGAVVNGERAAMYAPDFRLR 417
            +GFEIMFHV+TM+PY  +D QQVE+KRH+GND+VVI+FKEG+ PF+P+ I S FNH+FIVV   K  +  G    Y++ +  K GV S +P L  P  +  N DF   LL K            ++N E A+  AP F+++
Sbjct:  548 QGFEIMFHVATMLPYSHLDTQQVEKKRHIGNDIVVIIFKEGDKPFNPNIIQSDFNHVFIVVSVDKSNMSRGGAKRYKLSVVYKDGVGSSKPSLEYPCSFEANQDFKNYLLCK------------LINSECASYEAPSFKIK 676          
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Match: A0A8J4UU83_9MYCE (Rap-GAP domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UU83_9MYCE)

HSP 1 Score: 127 bits (318), Expect = 2.590e-31
Identity = 61/139 (43.88%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    1 RGFEIMFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEGNTPFDPDTIHSQFNHIFIVVEPHKIINGSCTHYRVEICCKPGVRSFRPYLVAPGIYPKNMDFLELLLLKSATRTTLLTEGAVVNGERAAMYAPDFRLR 417
            +GFEIMFHVST++P+  +D QQVE+KRH+GND+VVI+FKEG+  F+P  + S FNH+FI+V+P K    +   Y+V I  K GV   +PYL  P ++ +N +F E LL K            ++N E ++  AP F+++
Sbjct:  524 QGFEIMFHVSTLLPHTTVDKQQVEKKRHIGNDIVVIIFKEGDQVFEPKVMKSDFNHVFIIVQPDKT---NSKKYKVSIVYKEGVEISQPYLPYPSVWEQNKEFKEFLLCK------------LINSECSSYEAPSFKIK 647          
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Match: A0A2P6MMX7_9EUKA (RapGAP/RanGAP domain-containing protein (Fragment) n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MMX7_9EUKA)

HSP 1 Score: 124 bits (311), Expect = 3.500e-31
Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 RGFEIMFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEGNTPFDPDTIHSQFNHIFIVVEPHKIINGSCTHYRVEICCKPGVRSFRPYLVAPGIYPKNMDFLELLLLKSATRTTLLTEGAVVNGERAAMYAPDFR 411
              F+IM+HVST++P+ P D Q+VERKRHLGNDVVV++FKEG   F+P  + S FNH+FIVV+      GS   Y VE+  KPGVR++ PY+  P  +     F E LL K            ++N ERA M AP+F+
Sbjct:  281 EDFKIMYHVSTLLPFQPDDLQRVERKRHLGNDVVVVIFKEGKKAFNPLVMKSHFNHVFIVVQ-----RGSDRKYHVEVANKPGVRTYGPYVPFPARFEGGSKFREWLLSK------------MINAERACMQAPEFK 400          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107604.1615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4ISL8_9EUKA1.430e-4356.20Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6U1TK01_9EUKA2.060e-4154.74Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A2P6MPE4_9EUKA1.770e-3954.68Rap-GAP domain-containing protein n=1 Tax=Planopro... [more]
L8GR08_ACACA2.270e-3753.28GTPaseactivating protein n=1 Tax=Acanthamoeba cast... [more]
L8GG36_ACACA1.230e-3445.65RapGAP/RanGAP domain containing protein n=1 Tax=Ac... [more]
UPI000644F6B21.780e-3244.68hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZJW2_DICPU2.490e-3247.48Rap-GAP domain-containing protein n=1 Tax=Dictyost... [more]
D3BRC5_POLPP2.030e-3145.39Rap-GAP domain-containing protein n=1 Tax=Polyspho... [more]
A0A8J4UU83_9MYCE2.590e-3143.88Rap-GAP domain-containing protein n=1 Tax=Polyspho... [more]
A0A2P6MMX7_9EUKA3.500e-3146.72RapGAP/RanGAP domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107604contigM-pyrifera_M_contig107604:2..617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue8.9e-26
Seed eggNOG ortholog5786.XP_003287703.1
KEGG koko:K17701
KEGG Pathwayko04015,map04015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rap/ran-GAP
EggNOG OGs3X8N0@554915,KOG3686@1,KOG3686@2759
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size417
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107604.1615.1prot_M-pyrifera_M_contig107604.1615.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107604 2..602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.6574116-CDS-M-pyrifera_M_contig107604:1..831622815585.6574116-CDS-M-pyrifera_M_contig107604:1..83Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107604 2..83 -
1692277475.5420506-CDS-M-pyrifera_M_contig107604:1..831692277475.5420506-CDS-M-pyrifera_M_contig107604:1..83Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107604 2..83 -
1622815585.6770573-CDS-M-pyrifera_M_contig107604:227..3961622815585.6770573-CDS-M-pyrifera_M_contig107604:227..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107604 228..396 -
1692277475.553882-CDS-M-pyrifera_M_contig107604:227..3961692277475.553882-CDS-M-pyrifera_M_contig107604:227..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107604 228..396 -
1622815585.689995-CDS-M-pyrifera_M_contig107604:451..6021622815585.689995-CDS-M-pyrifera_M_contig107604:451..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107604 452..602 -
1692277475.5625541-CDS-M-pyrifera_M_contig107604:451..6021692277475.5625541-CDS-M-pyrifera_M_contig107604:451..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107604 452..602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.7022665-UTR-M-pyrifera_M_contig107604:602..6171622815585.7022665-UTR-M-pyrifera_M_contig107604:602..617Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107604 603..617 -
1692277475.5711517-UTR-M-pyrifera_M_contig107604:602..6171692277475.5711517-UTR-M-pyrifera_M_contig107604:602..617Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107604 603..617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107604.1615.1

>prot_M-pyrifera_M_contig107604.1615.1 ID=prot_M-pyrifera_M_contig107604.1615.1|Name=mRNA_M-pyrifera_M_contig107604.1615.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MFHVSTMIPYFPMDHQQVERKRHLGNDVVVIVFKEGNTPFDPDTIHSQFN
HIFIVVEPHKIINGSCTHYRVEICCKPGVRSFRPYLVAPGIYPKNMDFLE
LLLLKSATRTTLLTEGAVVNGERAAMYAPDFRLR
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mRNA from alignment at M-pyrifera_M_contig107604:2..617-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107604.1615.1 ID=mRNA_M-pyrifera_M_contig107604.1615.1|Name=mRNA_M-pyrifera_M_contig107604.1615.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=616bp|location=Sequence derived from alignment at M-pyrifera_M_contig107604:2..617- (Macrocystis pyrifera P11B4 male)
CGTGGCTTCGAGATCATGTTCCACGTGTCCACCATGATCCCCTACTTCCC CATGGACCACCAACAGGTGGAGCGCAAGCGTCACCTCGGCAACGACGTGG TCGTCATCGTGTTCAAGGAGGGCAACACTCCCTTCGACCCCGACACAATC CATTCTCAGTTCAATCGTGCGCCTTTCTCCCCACGGCTACCGCCTGTGGT CACCTGCTGACGGCTGGACAGATATTTTTATTGTTGTCGAGCCTCACAAG ATCATCAACGGCTCGTGTACGCACTACCGCGTGGAGATCTGCTGCAAGCC AGGCGTGCGCTCCTTCCGGCCCTACCTCGTTGCCCCTGGGATCTATCCCA AGAATATGGACTTCCTAGAGCTCCTCCTGCTCAAGAGTGCGTTCCTCTTC ATCAAACCTCTCTTCTCTTACCCTCACTCCGTCTCTCGCTCTCTCCTCTC GCTCTCTCTCTCCCTCTCTCCCTCTCTCGTCCGTCGCTCCTTCTCCTCCA CACAGCGCACACGAAGCACACGAAGCATGCGAAGCACACGGACAACGTTG CTGACGGAGGGTGCAGTTGTGAATGGAGAGCGCGCAGCGATGTATGCGCC CGACTTTCGGCTGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107604:2..617-

>mRNA_M-pyrifera_M_contig107604.1615.1 ID=mRNA_M-pyrifera_M_contig107604.1615.1|Name=mRNA_M-pyrifera_M_contig107604.1615.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig107604:2..617- (Macrocystis pyrifera P11B4 male)
ATGTTCCACGTGTCCACCATGATCCCCTACTTCCCCATGGACCACCAACA
GGTGGAGCGCAAGCGTCACCTCGGCAACGACGTGGTCGTCATCGTGTTCA
AGGAGGGCAACACTCCCTTCGACCCCGACACAATCCATTCTCAGTTCAAT
CATGTTCCACGTGTCCACCATGATCCCCTACTTCCCCATGGACCACCAAC
AGGTGGAGCGCAAGCGTCACCTCGGCAACGACGTGGTCGTCATCGTGTTC
AAGGAGGGCAACACTCCCTTCGACCCCGACACAATCCATTCTCAGTTCAA
TCATATTTTTATTGTTGTCGAGCCTCACAAGATCATCAACGGCTCGTGTA
CGCACTACCGCGTGGAGATCTGCTGCAAGCCAGGCGTGCGCTCCTTCCGG
CCCTACCTCGTTGCCCCTGGGATCTATCCCAAGAATATGGACTTCCTAGA
GCTCCTCCTGCTCAAGAGTGCATATTTTTATTGTTGTCGAGCCTCACAAG
ATCATCAACGGCTCGTGTACGCACTACCGCGTGGAGATCTGCTGCAAGCC
AGGCGTGCGCTCCTTCCGGCCCTACCTCGTTGCCCCTGGGATCTATCCCA
AGAATATGGACTTCCTAGAGCTCCTCCTGCTCAAGAGTGCCACACGGACA
ACGTTGCTGACGGAGGGTGCAGTTGTGAATGGAGAGCGCGCAGCGATGTA
TGCGCCCGACTTTCGGCTGAGGCACACGGACAACGTTGCTGACGGAGGGT
GCAGTTGTGAATGGAGAGCGCGCAGCGATGTATGCGCCCGACTTTCGGCT
GAGG
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