mRNA_M-pyrifera_M_contig107529.1611.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107529.1611.1
Unique NamemRNA_M-pyrifera_M_contig107529.1611.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107529.1611.1 vs. uniprot
Match: A0A2D4BH98_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH98_PYTIN)

HSP 1 Score: 81.3 bits (199), Expect = 2.250e-15
Identity = 46/130 (35.38%), Postives = 75/130 (57.69%), Query Frame = 1
Query:    1 ADCSFEVCPKGDNPRTTGQQDRSITMTIGSGGEAISGDVFVSFMRERSSVRFPIGAGG-ARCRAAWSALASVKSVRCFRTEFNETTLEATYVISY-KWATDPQDTLLLTNDGNPPLTHFGCDASPAVTTN 384
            ADCS ++CPK D+P TTGQ  R+I +T+G+ G A+ G + + F  + +++         A C AA++++ +VK+  C     + TT  A Y +++ +W     +  +L + GNPPLT F CD S   +TN
Sbjct:   13 ADCSSQLCPKNDDPLTTGQGFRTIKITVGATGSALVGAISIRFQGQVATLDASAAVNTPASCAAAFTSMKNVKAATCTIANVDGTTKGAEYTVAFTEWGHYATENNVLQHFGNPPLTSFTCDISKVTSTN 142          
BLAST of mRNA_M-pyrifera_M_contig107529.1611.1 vs. uniprot
Match: T0PYG0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PYG0_SAPDV)

HSP 1 Score: 80.5 bits (197), Expect = 4.230e-15
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    4 DCSFEVCPKGDNPRTTGQQDRSITMTIGSGGEAISGDVFVSFMRERSSVRFPIGAGG---ARCRAAWSALASVKSVRCFRTEFNETTLEATYVISY-KWATDPQDTLLLTNDGNPPLTHFGCDASPAVTTN 384
            DCS  +CPK D+P TTGQ  RS+ +T+   G A++G V  +F     SV  P        A C AA S+L++V S  C +   + TT  A+Y I++  W   P +  + T+DGNP L+ F C+     ++N
Sbjct:  158 DCSLRMCPKNDDPLTTGQTYRSVVLTVAGAGSALAGTVTFTF--NGRSVTMPANGNANSNAICAAAISSLSTVGSATCVQGAIDGTTGGASYTITFTSWPLTPVENNVFTHDGNPALSQFSCNVLGVTSSN 286          
BLAST of mRNA_M-pyrifera_M_contig107529.1611.1 vs. uniprot
Match: A0A1V9YCV6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCV6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.190e-13
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 1
Query:    4 DCSFEVCPKGDNPRTTGQQDRSITMTIGSGGEAISGDVFVSFMRERSSVRFPIGAGG---ARCRAAWSALASVKSVRCFRTEFNETTLEATYVISY-KWATDPQDTLLLTNDGNPPLTHFGCDASPAVTTN 384
            DCS  +CPK D+P TTGQ  RS+ +T+     A++G V  +F     SV  P  A     A C AA S+L +V S  C  +  + TT  ATY I++  W T   +  +  + GNP L+ F C+     + N
Sbjct:  157 DCSLRMCPKNDDPLTTGQAYRSVVLTVAGSSSALAGTVTFTF--NGRSVTMPANANSNSDAICTAAISSLPNVGSATCVMSNVDGTTQGATYTITFTSWPTGAVENNVFFHYGNPSLSQFSCNVLGVTSAN 285          
BLAST of mRNA_M-pyrifera_M_contig107529.1611.1 vs. uniprot
Match: A0A5D6Y4K7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4K7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.420e-12
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1
Query:    4 DCSF---EVCPKGDNPRTTGQQDRSITMTIGSGGEAISGDVFVSFMRERSSV-RFPIGAGGARCRAAWSALASVKSVRCFRTEFNETTLEATYVISY-KWATDPQDTLLLTNDGNPPLTHFGCDASPAVTTN 384
            DCS    E+CPK D+P TTGQ  R+I + IG     + G V V+F  E +++     G   + C +A+  L SV    C  T  + T   A YV+ + +WA    +  LL ++GNPPL+ F CD S   + N
Sbjct:  320 DCSMSACEMCPKNDDPLTTGQGYRTIKIRIGGTASLLVGTVGVAFNGEVATIDASAAGNTASTCASAFMQLRSVARATCTITVLDNTVKSAEYVVEFTEWAHIDAENNLLFHNGNPPLSAFTCDISKVTSAN 451          
BLAST of mRNA_M-pyrifera_M_contig107529.1611.1 vs. uniprot
Match: A0A7R9WJX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJX3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.150e-11
Identity = 42/127 (33.07%), Postives = 71/127 (55.91%), Query Frame = 1
Query:    4 DCSFEVCPKGDNPRTTGQQDRSITMTIGSG-GEAISGDVFVSFMRERSSVRFPIGAG---GARCRAAWSALASVKSVRCFRTEFNE-TTLEATYVISYK-WATDPQDTLLLTNDGNPPLTHFGCDAS 366
            DCS  +CPKGD+P TTGQ  R  T++ G+  G A+ G   ++F+ E  +++F        G  C A++ ++ +++ V C ++ F+   TL ATY ++   +   P +  + ++DGNP L    CD S
Sbjct:   19 DCSRRICPKGDDPLTTGQSYRQFTISTGADPGLALDGYFKLTFLGE--TIQFSASGAVWTGTECEASFESMRNIEDVNCVQSTFDSGDTLSATYTVTLNAFPIIPHENNIFSHDGNPLLEDVTCDIS 143          
BLAST of mRNA_M-pyrifera_M_contig107529.1611.1 vs. uniprot
Match: A0A1V9ZWM3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWM3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.630e-10
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    4 DCSFEVCPKGDNPRTTGQQDRSITMTIGSGGEAISGDVFVSFMRERSSVRFPIGA---GGARCRAAWSALASVKSVRCFRTEFNETTLEATYVISY-KWATDPQDTLLLTNDGNPPLTHFGCD 360
            DCS  +CPK D+P TTGQ  R++++T+ +   A++G V  +F  +  SV  P  +     A C AA S+L ++ +  C  +  N  T  A Y I++  W     +  + T++GNP L+ F C+
Sbjct:  158 DCSLRMCPKNDDPLTTGQGYRTVSLTLAA-STALAGSVTFTFSGQ--SVTMPANSDANSNAICTAAISSLPNIGAATCTMSNINGVTKGAVYTIAFTSWGGISYENNIFTHNGNPLLSQFSCN 277          
BLAST of mRNA_M-pyrifera_M_contig107529.1611.1 vs. uniprot
Match: A0A6A4XYA5_9STRA (EGF-like domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XYA5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.080e-9
Identity = 43/133 (32.33%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    4 DCSFEVCPKGDNPRTTGQQDRSITMTIGSGGEAISGDVFVSFMRERSSVRFPIGAGG-----ARCRAAWSALASVKSVRCFRTEFNETTLEATYVISYK-WATDPQDTLLLTNDGNPPLTHFGCDASPAVTTN 384
            DCS  +CPK D+P TTGQ  R+I++T+ + G A++G + V+F    +   F + A G     + C      LA+V    C     + TT  ATY I +K W     +  +  + GNP L+ F C+     + N
Sbjct:  166 DCSMRMCPKNDDPLTTGQSYRTISLTVAAMGSALAGSISVAF----NGYSFTMPANGNANSNSICTKGVQTLANVAQATCTMGAVDATTGGATYTIVFKQWTIVGAENNVFFHSGNPSLSLFTCNVVGVTSAN 294          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107529.1611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2D4BH98_PYTIN2.250e-1535.38Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
T0PYG0_SAPDV4.230e-1536.64Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9YCV6_9STRA6.190e-1335.88Uncharacterized protein (Fragment) n=1 Tax=Achlya ... [more]
A0A5D6Y4K7_9STRA5.420e-1236.36Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A7R9WJX3_9STRA1.150e-1133.07Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A1V9ZWM3_9STRA5.630e-1033.33Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A6A4XYA5_9STRA1.080e-932.33EGF-like domain-containing protein (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107529contigM-pyrifera_M_contig107529:5..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog112098.XP_008615905.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.4333153-CDS-M-pyrifera_M_contig107529:4..3881622815585.4333153-CDS-M-pyrifera_M_contig107529:4..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107529 5..388 +
1692277475.4602823-CDS-M-pyrifera_M_contig107529:4..3881692277475.4602823-CDS-M-pyrifera_M_contig107529:4..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107529 5..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107529.1611.1prot_M-pyrifera_M_contig107529.1611.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107529 5..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107529.1611.1

>prot_M-pyrifera_M_contig107529.1611.1 ID=prot_M-pyrifera_M_contig107529.1611.1|Name=mRNA_M-pyrifera_M_contig107529.1611.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
ADCSFEVCPKGDNPRTTGQQDRSITMTIGSGGEAISGDVFVSFMRERSSV
RFPIGAGGARCRAAWSALASVKSVRCFRTEFNETTLEATYVISYKWATDP
QDTLLLTNDGNPPLTHFGCDASPAVTTN
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mRNA from alignment at M-pyrifera_M_contig107529:5..388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107529.1611.1 ID=mRNA_M-pyrifera_M_contig107529.1611.1|Name=mRNA_M-pyrifera_M_contig107529.1611.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig107529:5..388+ (Macrocystis pyrifera P11B4 male)
GCAGACTGCTCCTTCGAAGTCTGCCCAAAGGGTGACAACCCCAGGACCAC GGGCCAACAAGACCGTTCCATCACCATGACAATCGGCTCGGGCGGAGAGG CCATCAGCGGGGACGTCTTCGTCAGCTTCATGCGAGAACGGTCTTCGGTG CGGTTTCCCATCGGAGCAGGAGGGGCGAGGTGTAGGGCGGCGTGGTCTGC GCTGGCATCGGTGAAATCAGTGCGTTGTTTTCGCACGGAATTCAACGAAA CCACCCTGGAAGCCACCTACGTCATCAGCTACAAGTGGGCGACAGATCCA CAAGACACGCTCCTGCTCACGAACGACGGCAACCCACCACTCACGCACTT TGGCTGTGACGCGAGCCCCGCCGTCACCACCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107529:5..388+

>mRNA_M-pyrifera_M_contig107529.1611.1 ID=mRNA_M-pyrifera_M_contig107529.1611.1|Name=mRNA_M-pyrifera_M_contig107529.1611.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig107529:5..388+ (Macrocystis pyrifera P11B4 male)
GCAGACTGCTCCTTCGAAGTCTGCCCAAAGGGTGACAACCCCAGGACCAC
GGGCCAACAAGACCGTTCCATCACCATGACAATCGGCTCGGGCGGAGAGG
CCATCAGCGGGGACGTCTTCGTCAGCTTCATGCGAGAACGGTCTTCGGTG
CGGTTTCCCATCGGAGCAGGAGGGGCGAGGTGTAGGGCGGCGTGGTCTGC
GCTGGCATCGGTGAAATCAGTGCGTTGTTTTCGCACGGAATTCAACGAAA
CCACCCTGGAAGCCACCTACGTCATCAGCTACAAGTGGGCGACAGATCCA
CAAGACACGCTCCTGCTCACGAACGACGGCAACCCACCACTCACGCACTT
TGGCTGTGACGCGAGCCCCGCCGTCACCACCAACGCAGACTGCTCCTTCG
AAGTCTGCCCAAAGGGTGACAACCCCAGGACCACGGGCCAACAAGACCGT
TCCATCACCATGACAATCGGCTCGGGCGGAGAGGCCATCAGCGGGGACGT
CTTCGTCAGCTTCATGCGAGAACGGTCTTCGGTGCGGTTTCCCATCGGAG
CAGGAGGGGCGAGGTGTAGGGCGGCGTGGTCTGCGCTGGCATCGGTGAAA
TCAGTGCGTTGTTTTCGCACGGAATTCAACGAAACCACCCTGGAAGCCAC
CTACGTCATCAGCTACAAGTGGGCGACAGATCCACAAGACACGCTCCTGC
TCACGAACGACGGCAACCCACCACTCACGCACTTTGGCTGTGACGCGAGC
CCCGCCGTCACCACCAAC
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