mRNA_M-pyrifera_M_contig107517.1607.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107517.1607.1
Unique NamemRNA_M-pyrifera_M_contig107517.1607.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Match: A0A2P2KI50_RHIMU (Ubiquitin-like domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KI50_RHIMU)

HSP 1 Score: 78.6 bits (192), Expect = 2.380e-15
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   34 VDPKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKIRDLMIRQQMQRAARDLEINAMRARLAADPTDAEAQRRLEEAIRQQNVQENWAQAMEHNPEAFASV 345
            V+P  +   LR + +M+ +  ++NP +A+A   +D ++++DL+ +   QRA    +     A LAADP D EAQR++E AIRQ+ + ENWA A+E+NPE FA V
Sbjct:   91 VNPGAMQQYLRRDSNMMAQLFQTNPELAQAILGNDLNRLQDLLRQWNHQRAELRRQQEEEMALLAADPFDVEAQRKIEAAIRQKGIDENWAAALEYNPEGFARV 194
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BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Match: A0A2P2KI26_RHIMU (DNA damage-inducible protein 1 n=3 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KI26_RHIMU)

HSP 1 Score: 78.6 bits (192), Expect = 1.010e-14
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   34 VDPKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKIRDLMIRQQMQRAARDLEINAMRARLAADPTDAEAQRRLEEAIRQQNVQENWAQAMEHNPEAFASV 345
            V+P  +   LR + +M+ +  ++NP +A+A   +D ++++DL+ +   QRA    +     A LAADP D EAQR++E AIRQ+ + ENWA A+E+NPE FA V
Sbjct:   91 VNPGAMQQYLRRDSNMMAQLFQTNPELAQAILGNDLNRLQDLLRQWNHQRAELRRQQEEEMALLAADPFDVEAQRKIEAAIRQKGIDENWAAALEYNPEGFARV 194
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BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Match: UPI001CB8EED6 (protein DNA-DAMAGE INDUCIBLE 1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8EED6)

HSP 1 Score: 78.6 bits (192), Expect = 1.010e-14
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   34 VDPKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKIRDLMIRQQMQRAARDLEINAMRARLAADPTDAEAQRRLEEAIRQQNVQENWAQAMEHNPEAFASV 345
            VDP      +R+N  ++ +  +S+P +A++   +D +K++DL+  +  QR+  + +     A L ADP D EAQ+++E AIRQ+ + ENWA A+EHNPEAFA V
Sbjct:   94 VDPAAFQQQVRNNSDLMAQLFQSDPELAQSVLGNDLNKLQDLLRVRHHQRSEFNRQKEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFAKV 197
[Close]
BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Match: A0A6L2MM57_TANCI (DNA damage-inducible protein 1 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2MM57_TANCI)

HSP 1 Score: 78.6 bits (192), Expect = 1.210e-14
Identity = 41/104 (39.42%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   34 VDPKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKIRDLMIRQQMQRAARDLEINAMRARLAADPTDAEAQRRLEEAIRQQNVQENWAQAMEHNPEAFASV 345
            V+P      +R+N +M+ +  +S+P +A+    +D +K++D++  +  QR+  + +     A L ADP D EAQ+++E AIRQ+ + ENWA A+EHNPEAFA V
Sbjct:  252 VNPAAFQQQVRNNSNMMAQLFQSDPELAQVILGNDLNKLQDILRVRHRQRSEHNRQKEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFAKV 355
[Close]
BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Match: A0A830BU56_9LAMI (DNA damage-inducible protein 1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BU56_9LAMI)

HSP 1 Score: 78.2 bits (191), Expect = 1.400e-14
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   34 VDPKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKIRDLMIRQQMQRAARDLEINAMRARLAADPTDAEAQRRLEEAIRQQNVQENWAQAMEHNPEAFASV 345
            V+P      LRS+ +++ +  +S+P +A+A   +D ++++D++  +  QR+    +     A L ADP D EAQR++E AIRQ+ + ENWA A+EHNPEAFA V
Sbjct:   97 VNPSAFQQQLRSDSNLMAQLFQSDPELAQAILGNDLNRLQDILRARNQQRSELKRKQEEEMALLYADPFDIEAQRKIEAAIRQKGIDENWAAALEHNPEAFARV 200
[Close]
BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Match: A0A8C6YJ83_NAJNA (Ubiquitin-like domain-containing protein n=1 Tax=Naja naja TaxID=35670 RepID=A0A8C6YJ83_NAJNA)

HSP 1 Score: 78.2 bits (191), Expect = 1.650e-14
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:   22 VPPGVD-PKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKIRDLMIRQQMQRAARDLEINAMRARL-AADPTDAEAQRRLEEAIRQQNVQENWAQAMEHNPEAFASV 345
            +P G+D P  L A+L +NPH +    + NP +AEA    D  K   +++ QQ  RA R+ E    R RL +ADP D EAQ ++EE IRQQN++EN   AME +PE+F  V
Sbjct:  139 IPQGLDNPALLRAMLLANPHELSLLKERNPPLAEALLSGDLEKFTQVLVEQQQDRARREQE----RIRLFSADPFDLEAQAKIEEDIRQQNIEENMTIAMEESPESFGQV 244
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BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Match: A0A251UUY0_HELAN (Putative ubiquitin family protein n=3 Tax=Asteraceae TaxID=4210 RepID=A0A251UUY0_HELAN)

HSP 1 Score: 77.4 bits (189), Expect = 2.610e-14
Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:   34 VDPKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKIRDLMIRQQMQRAARDLEINAMRARLAADPTDAEAQRRLEEAIRQQNVQENWAQAMEHNPEAFASV 345
            V+P      +R+N  ++ +  +S+P +A+    +D +K++DL+ R+  QR+    +     A L ADP D EAQ+++E AIRQ+ + ENWA A+EHNPEAFA V
Sbjct:   90 VNPAAFQQQIRNNSDLMAQLLQSDPELAQIIIGNDLNKLQDLLRRRHNQRSELRRQQEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARV 193
[Close]
BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Match: UPI000775FF7E (protein DDI1 homolog 2 n=1 Tax=Protobothrops mucrosquamatus TaxID=103944 RepID=UPI000775FF7E)

HSP 1 Score: 77.4 bits (189), Expect = 2.880e-14
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 1 
Query:   22 VPPGVD-PKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKIRDLMIRQQMQRAARDLEINAMRARL-AADPTDAEAQRRLEEAIRQQNVQENWAQAMEHNPEAFASV 345
            +P G+D P  L A+L +NPH +    + NP +AEA    D  K   +++ QQ  RA R+ E    R RL +ADP D EAQ ++EE IRQQN++EN   AME  PE+F  V
Sbjct:  136 IPQGLDNPALLRAMLLANPHELSLLKERNPPLAEALLSGDLEKFTQVLVEQQQDRARREQE----RIRLFSADPFDLEAQAKIEEEIRQQNIEENMTIAMEEAPESFGQV 241
[Close]
BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Match: A0A059BW56_EUCGR (Ubiquitin-like domain-containing protein n=9 Tax=Myrtoideae TaxID=1699513 RepID=A0A059BW56_EUCGR)

HSP 1 Score: 77.0 bits (188), Expect = 3.180e-14
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   34 VDPKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKIRDLMIRQQMQRAARDLEINAMRARLAADPTDAEAQRRLEEAIRQQNVQENWAQAMEHNPEAFASV 345
            V+P  L   LR + +M+ +  +++P  A+A   +D +K++D++  +  QR+    + +   A L ADP D EAQ+++E AIRQ+ + ENWA A+EHNPEAFA V
Sbjct:   92 VNPAALQQQLRQDSNMMAQLFQNDPEFAQALLGNDLNKLQDVLRERHRQRSELRRQQDEELALLHADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARV 195
[Close]
BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Match: A0A6I9YNF5_9SAUR (protein DDI1 homolog 2-like n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9YNF5_9SAUR)

HSP 1 Score: 77.0 bits (188), Expect = 3.230e-14
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 1 
Query:   22 VPPGVD-PKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKIRDLMIRQQMQRAARDLEINAMRARL-AADPTDAEAQRRLEEAIRQQNVQENWAQAMEHNPEAFASV 345
            +P G+D P  L A+L +NPH +    + NP +AEA    D  K   +++ QQ  RA R+ E    R RL +ADP D EAQ ++EE IRQQN++EN   AME  PE+F  V
Sbjct:  108 IPQGLDNPALLRAMLLANPHELSLLKERNPPLAEALLSGDLEKFTQVLVEQQQDRARREQE----RIRLFSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQV 213
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107517.1607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P2KI50_RHIMU2.380e-1541.35Ubiquitin-like domain-containing protein n=1 Tax=R... [more]
A0A2P2KI26_RHIMU1.010e-1441.35DNA damage-inducible protein 1 n=3 Tax=Rhizophora ... [more]
UPI001CB8EED61.010e-1440.38protein DNA-DAMAGE INDUCIBLE 1 n=1 Tax=Erigeron ca... [more]
A0A6L2MM57_TANCI1.210e-1439.42DNA damage-inducible protein 1 n=1 Tax=Tanacetum c... [more]
A0A830BU56_9LAMI1.400e-1440.38DNA damage-inducible protein 1 n=1 Tax=Phtheirospe... [more]
A0A8C6YJ83_NAJNA1.650e-1444.55Ubiquitin-like domain-containing protein n=1 Tax=N... [more]
A0A251UUY0_HELAN2.610e-1440.38Putative ubiquitin family protein n=3 Tax=Asterace... [more]
UPI000775FF7E2.880e-1444.55protein DDI1 homolog 2 n=1 Tax=Protobothrops mucro... [more]
A0A059BW56_EUCGR3.180e-1440.38Ubiquitin-like domain-containing protein n=9 Tax=M... [more]
A0A6I9YNF5_9SAUR3.230e-1444.55protein DDI1 homolog 2-like n=1 Tax=Thamnophis sir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107517contigM-pyrifera_M_contig107517:39..383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog112098.XP_008605479.1
KEGG koko:K09537,ko:K11885
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG0012@1,KOG0012@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051,ko03110
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.2764258-CDS-M-pyrifera_M_contig107517:38..3831622815585.2764258-CDS-M-pyrifera_M_contig107517:38..383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107517 39..383 +
1692277475.4157522-CDS-M-pyrifera_M_contig107517:38..3831692277475.4157522-CDS-M-pyrifera_M_contig107517:38..383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107517 39..383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107517.1607.1prot_M-pyrifera_M_contig107517.1607.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107517 39..383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107517.1607.1

>prot_M-pyrifera_M_contig107517.1607.1 ID=prot_M-pyrifera_M_contig107517.1607.1|Name=mRNA_M-pyrifera_M_contig107517.1607.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
AGLTWEDVPPGVDPKTLHAILRSNPHMVEEASKSNPAMAEAARHHDSSKI
RDLMIRQQMQRAARDLEINAMRARLAADPTDAEAQRRLEEAIRQQNVQEN
WAQAMEHNPEAFASV
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mRNA from alignment at M-pyrifera_M_contig107517:39..383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107517.1607.1 ID=mRNA_M-pyrifera_M_contig107517.1607.1|Name=mRNA_M-pyrifera_M_contig107517.1607.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig107517:39..383+ (Macrocystis pyrifera P11B4 male)
GCTGGATTGACTTGGGAGGATGTTCCTCCAGGAGTTGATCCAAAGACGTT
GCATGCCATATTGCGGTCTAACCCACACATGGTGGAGGAGGCTTCCAAGT
CGAATCCAGCGATGGCAGAGGCGGCAAGACACCACGACAGCTCCAAGATT
CGAGATTTGATGATTCGGCAGCAAATGCAACGGGCAGCAAGAGACCTCGA
AATCAACGCAATGCGAGCAAGACTTGCAGCAGACCCAACTGACGCAGAGG
CGCAAAGGAGACTCGAAGAAGCAATTCGACAGCAAAACGTCCAGGAAAAC
TGGGCACAAGCCATGGAACACAACCCAGAAGCCTTCGCCTCCGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107517:39..383+

>mRNA_M-pyrifera_M_contig107517.1607.1 ID=mRNA_M-pyrifera_M_contig107517.1607.1|Name=mRNA_M-pyrifera_M_contig107517.1607.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig107517:39..383+ (Macrocystis pyrifera P11B4 male)
GCTGGATTGACTTGGGAGGATGTTCCTCCAGGAGTTGATCCAAAGACGTT
GCATGCCATATTGCGGTCTAACCCACACATGGTGGAGGAGGCTTCCAAGT
CGAATCCAGCGATGGCAGAGGCGGCAAGACACCACGACAGCTCCAAGATT
CGAGATTTGATGATTCGGCAGCAAATGCAACGGGCAGCAAGAGACCTCGA
AATCAACGCAATGCGAGCAAGACTTGCAGCAGACCCAACTGACGCAGAGG
CGCAAAGGAGACTCGAAGAAGCAATTCGACAGCAAAACGTCCAGGAAAAC
TGGGCACAAGCCATGGAACACAACCCAGAAGCCTTCGCCTCCGTAGCTGG
ATTGACTTGGGAGGATGTTCCTCCAGGAGTTGATCCAAAGACGTTGCATG
CCATATTGCGGTCTAACCCACACATGGTGGAGGAGGCTTCCAAGTCGAAT
CCAGCGATGGCAGAGGCGGCAAGACACCACGACAGCTCCAAGATTCGAGA
TTTGATGATTCGGCAGCAAATGCAACGGGCAGCAAGAGACCTCGAAATCA
ACGCAATGCGAGCAAGACTTGCAGCAGACCCAACTGACGCAGAGGCGCAA
AGGAGACTCGAAGAAGCAATTCGACAGCAAAACGTCCAGGAAAACTGGGC
ACAAGCCATGGAACACAACCCAGAAGCCTTCGCCTCCGTA
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