mRNA_M-pyrifera_M_contig107516.1606.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107516.1606.1
Unique NamemRNA_M-pyrifera_M_contig107516.1606.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Match: A0A1B0CRG6_LUTLO (Uncharacterized protein n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A1B0CRG6_LUTLO)

HSP 1 Score: 60.1 bits (144), Expect = 2.400e-8
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   19 LQRHIRGFHQGIRPHVCSRCGKSFVCRSDLVEHERTHAGV-TYSCDSCGKSYKSRVGIRRH 198
            L  HIR  H   +P +C  CGKSFV +  LVEH+ +H+   T+ C  C K +K++  ++RH
Sbjct:  310 LNTHIRAIHYREKPFICEECGKSFVTKGALVEHQISHSEERTFECPFCLKMFKNQPQLKRH 370
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BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Match: UPI00143D0027 (zinc finger protein 271-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D0027)

HSP 1 Score: 56.6 bits (135), Expect = 4.110e-7
Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 FKSSVGLQRHIRGFHQGIRPHVCSRCGKSFVCRSDLVEHERTHAGVTYSCDSCGKSYK 174
            F+ +V L+ H++  H+GI+PHVC  CGKSF   S++  H   H G  + C  C + ++
Sbjct:  558 FRDAVRLREHVKSIHEGIKPHVCDMCGKSFHRLSNMKVHRALHLG--HKCTHCEQVFE 613
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BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Match: A0A1B0CYH7_PHLPP (Uncharacterized protein n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0CYH7_PHLPP)

HSP 1 Score: 55.8 bits (133), Expect = 5.810e-7
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 FKSSVGLQRHIRGFHQGIRPHVCSRCGKSFVCRSDLVEHERTH 129
            F  SVGLQ HIRG H   RP +C  CGK FV +  L +H+R+H
Sbjct:   79 FIRSVGLQVHIRGIHTKDRPFICEECGKCFVSKGALKDHQRSH 121
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BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Match: A0A851NJG8_9GALL (ZBTB9 protein (Fragment) n=1 Tax=Penelope pileata TaxID=1118817 RepID=A0A851NJG8_9GALL)

HSP 1 Score: 54.7 bits (130), Expect = 1.840e-6
Identity = 20/50 (40.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:   52 IRPHVCSRCGKSFVCRSDLVEHERTHAGVTYSCDSCGKSYKSRVGIRRHR 201
            +RP  C  C K F  +  L EH +TH G   +C+ CG+S++ R G+ +HR
Sbjct:  369 LRPFGCPACHKRFKLKHHLTEHMKTHDGAARACERCGRSFRLRSGLAKHR 418
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BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Match: UPI001CA9BDAB (zinc finger protein 845-like n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA9BDAB)

HSP 1 Score: 54.3 bits (129), Expect = 2.650e-6
Identity = 20/58 (34.48%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 FKSSVGLQRHIRGFHQGIRPHVCSRCGKSFVCRSDLVEHERTHAGVTYSCDSCGKSYK 174
            F+ +V L+ H++  H+G++PH C  CGKSF   S++  H   H G  + C  C ++++
Sbjct:  487 FRDNVRLKEHMKSIHEGVKPHTCDVCGKSFHRLSNMKAHRALHFG--HKCPHCEQNFE 542
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BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Match: UPI001E1DEC98 (gastrula zinc finger protein XlCGF66.1-like isoform X1 n=5 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEC98)

HSP 1 Score: 52.4 bits (124), Expect = 4.010e-6
Identity = 27/94 (28.72%), Postives = 39/94 (41.49%), Query Frame = 1 
Query:    7 SSVGLQRHIRGFHQGIRPHVCSRCGKSFVCRSDLVEHERTHAGVTYSC--------------------DS-------CGKSYKSRVGIRRHRSS 207
            S   L RH    H  ++   C +C K+F   SD+  HER+H    + C                    DS       CGK+YK R  ++RH++S
Sbjct:   68 SRANLMRHRCAVHNEVKQFACKKCDKTFAMESDMKRHERSHEQPAFKCTICGVETKYLHRFQDHVAAHDSVRKYSCKCGKTYKYRSNLQRHKAS 161
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BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Match: A0A8J2HQ49_COTCN (Similar to ZNF782: Zinc finger protein 782 (Homo sapiens) n=1 Tax=Cotesia congregata TaxID=51543 RepID=A0A8J2HQ49_COTCN)

HSP 1 Score: 53.1 bits (126), Expect = 4.080e-6
Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   58 PHVCSRCGKSFVCRSDLVEHERTHAGV--TYSCDSCGKSYKSRVGIRRHR 201
            PH C +C  SF   + LVEH +   G+   +SCD CGK++KS + I RH+
Sbjct:   15 PHKCVKCSASFFHMTKLVEHLKNTHGIENAFSCDECGKAFKSPMNIARHK 64
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BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Match: A0A8C5CS28_GADMO (Zinc finger and BTB domain containing 48 n=3 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5CS28_GADMO)

HSP 1 Score: 53.5 bits (127), Expect = 4.970e-6
Identity = 27/71 (38.03%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    1 FKSSVGLQRHIRGFHQGIRPHVCSRCGKSFVCRSDLVEHERTHAG--VTYSCDSCGKSYKSRVGIRRHRSS 207
            F+S   L+ H R  H G +P VCS+CGK +  + +L+EHE  +    VT+SC  C   +K +   R H  S
Sbjct:  375 FRSKYYLKVHNRR-HTGEKPFVCSKCGKRYFRKENLLEHEARNCSKVVTFSCTICPSVFKRKQEFRLHMIS 444
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BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Match: A0A4C1TAW4_EUMVA (Zinc finger protein 595 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TAW4_EUMVA)

HSP 1 Score: 53.5 bits (127), Expect = 5.030e-6
Identity = 24/66 (36.36%), Postives = 35/66 (53.03%), Query Frame = 1 
Query:   13 VGLQRHIRGFHQGIRPHVCSRCGKSFVCRSDLVEHERTHAGVTYSC---DSCGKSYKSRVGIRRHR 201
            V L  HIR  H   +P+ C  C K    RS+L+ H   H G   S    D CGK++K++  +++HR
Sbjct:  150 VLLNNHIRSVHDQCKPYQCDVCKKYLTTRSNLMSHMNRHFGERVSACDYDGCGKTFKTKGEMQKHR 215
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BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Match: UPI00063F849A (LOW QUALITY PROTEIN: zinc finger protein OZF-like n=1 Tax=Propithecus coquereli TaxID=379532 RepID=UPI00063F849A)

HSP 1 Score: 53.1 bits (126), Expect = 6.510e-6
Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:   37 GFHQGIRPHVCSRCGKSFVCRSDLVEHERTHAGV-TYSCDSCGKSYKSR 180
            G + G +PH C++CGK+F CRS L+ H R H G  +Y C   G  + S+
Sbjct:  273 GSNSGEKPHKCTKCGKAFPCRSQLIVHHRVHRGDRSYGCSEQGTGFSSQ 321
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107516.1606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B0CRG6_LUTLO2.400e-840.98Uncharacterized protein n=1 Tax=Lutzomyia longipal... [more]
UPI00143D00274.110e-737.93zinc finger protein 271-like n=1 Tax=Belonocnema k... [more]
A0A1B0CYH7_PHLPP5.810e-753.49Uncharacterized protein n=1 Tax=Phlebotomus papata... [more]
A0A851NJG8_9GALL1.840e-640.00ZBTB9 protein (Fragment) n=1 Tax=Penelope pileata ... [more]
UPI001CA9BDAB2.650e-634.48zinc finger protein 845-like n=1 Tax=Leptopilina h... [more]
UPI001E1DEC984.010e-628.72gastrula zinc finger protein XlCGF66.1-like isofor... [more]
A0A8J2HQ49_COTCN4.080e-644.00Similar to ZNF782: Zinc finger protein 782 (Homo s... [more]
A0A8C5CS28_GADMO4.970e-638.03Zinc finger and BTB domain containing 48 n=3 Tax=G... [more]
A0A4C1TAW4_EUMVA5.030e-636.36Zinc finger protein 595 n=1 Tax=Eumeta variegata T... [more]
UPI00063F849A6.510e-642.86LOW QUALITY PROTEIN: zinc finger protein OZF-like ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107516contigM-pyrifera_M_contig107516:3..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog51511.ENSCSAVP00000007598
Preferred nameMECOM
KEGG koko:K04462,ko:K22410
KEGG Pathwayko04010,ko04714,ko05200,ko05220,map04010,map04714,map05200,map05220
Hectar predicted targeting categorymitochondrion
GOsGO:0000122,GO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001228,GO:0001655,GO:0001701,GO:0001776,GO:0001780,GO:0001932,GO:0001933,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006996,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008283,GO:0008757,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0016043,GO:0016070,GO:0016234,GO:0016235,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016604,GO:0016607,GO:0016740,GO:0016741,GO:0017015,GO:0017053,GO:0018022,GO:0018024,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0022008,GO:0023051,GO:0023057,GO:0030097,GO:0030154,GO:0030326,GO:0030334,GO:0030512,GO:0030852,GO:0030853,GO:0030900,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032872,GO:0032873,GO:0032879,GO:0032991,GO:0033613,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035019,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035116,GO:0035136,GO:0035137,GO:0036211,GO:0040012,GO:0042054,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0042802,GO:0042803,GO:0043009,GO:0043067,GO:0043069,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043409,GO:0043412,GO:0043414,GO:0043457,GO:0043467,GO:0043565,GO:0043586,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045444,GO:0045595,GO:0045596,GO:0045597,GO:0045598,GO:0045600,GO:0045637,GO:0045638,GO:0045664,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046328,GO:0046329,GO:0046332,GO:0046483,GO:0046983,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048598,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0048872,GO:0050767,GO:0050789,GO:0050793,GO:0050794,GO:0050872,GO:0050873,GO:0050896,GO:0051093,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051276,GO:0051704,GO:0051707,GO:0051726,GO:0051960,GO:0060021,GO:0060039,GO:0060173,GO:0060255,GO:0060284,GO:0060322,GO:0060429,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070302,GO:0070303,GO:0071425,GO:0071704,GO:0071840,GO:0072001,GO:0072089,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090335,GO:0090336,GO:0097159,GO:0097659,GO:0098727,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902105,GO:1902106,GO:1902531,GO:1902532,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1903844,GO:1903845,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2001141
EggNOG free text desc.positive regulation of brown fat cell differentiation
EggNOG OGs38D4Z@33154,3BAJ6@33208,3CY6F@33213,47Z6R@7711,KOG1721@1,KOG1721@2759
COG Functional cat.K
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.2412193-CDS-M-pyrifera_M_contig107516:2..3111622815585.2412193-CDS-M-pyrifera_M_contig107516:2..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107516 3..311 +
1692277475.4014275-CDS-M-pyrifera_M_contig107516:2..3111692277475.4014275-CDS-M-pyrifera_M_contig107516:2..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107516 3..311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107516.1606.1prot_M-pyrifera_M_contig107516.1606.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107516 3..311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107516.1606.1

>prot_M-pyrifera_M_contig107516.1606.1 ID=prot_M-pyrifera_M_contig107516.1606.1|Name=mRNA_M-pyrifera_M_contig107516.1606.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
FKSSVGLQRHIRGFHQGIRPHVCSRCGKSFVCRSDLVEHERTHAGVTYSC
DSCGKSYKSRVGIRRHRSSVHLGIRHPCSHCSKTFAQQSYLRRHLKKIHG
VE*
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mRNA from alignment at M-pyrifera_M_contig107516:3..311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107516.1606.1 ID=mRNA_M-pyrifera_M_contig107516.1606.1|Name=mRNA_M-pyrifera_M_contig107516.1606.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig107516:3..311+ (Macrocystis pyrifera P11B4 male)
TTCAAGTCCTCTGTTGGTCTTCAACGTCACATTCGAGGATTTCATCAAGG
CATTCGTCCCCATGTTTGCTCTCGTTGTGGGAAGTCGTTTGTTTGTCGAT
CTGATCTTGTTGAACACGAGCGCACGCATGCTGGTGTGACGTATTCGTGT
GATTCTTGTGGGAAATCGTACAAATCTCGCGTTGGCATTCGTCGCCACCG
ATCTAGTGTCCACCTTGGCATTCGCCATCCGTGTTCTCATTGCAGCAAGA
CATTTGCACAACAATCCTACCTCCGCCGACACCTGAAGAAGATCCATGGC
GTGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107516:3..311+

>mRNA_M-pyrifera_M_contig107516.1606.1 ID=mRNA_M-pyrifera_M_contig107516.1606.1|Name=mRNA_M-pyrifera_M_contig107516.1606.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig107516:3..311+ (Macrocystis pyrifera P11B4 male)
TTCAAGTCCTCTGTTGGTCTTCAACGTCACATTCGAGGATTTCATCAAGG
CATTCGTCCCCATGTTTGCTCTCGTTGTGGGAAGTCGTTTGTTTGTCGAT
CTGATCTTGTTGAACACGAGCGCACGCATGCTGGTGTGACGTATTCGTGT
GATTCTTGTGGGAAATCGTACAAATCTCGCGTTGGCATTCGTCGCCACCG
ATCTAGTGTCCACCTTGGCATTCGCCATCCGTGTTCTCATTGCAGCAAGA
CATTTGCACAACAATCCTACCTCCGCCGACACCTGAAGAAGATCCATGGC
GTGGAATAGTTCAAGTCCTCTGTTGGTCTTCAACGTCACATTCGAGGATT
TCATCAAGGCATTCGTCCCCATGTTTGCTCTCGTTGTGGGAAGTCGTTTG
TTTGTCGATCTGATCTTGTTGAACACGAGCGCACGCATGCTGGTGTGACG
TATTCGTGTGATTCTTGTGGGAAATCGTACAAATCTCGCGTTGGCATTCG
TCGCCACCGATCTAGTGTCCACCTTGGCATTCGCCATCCGTGTTCTCATT
GCAGCAAGACATTTGCACAACAATCCTACCTCCGCCGACACCTGAAGAAG
ATCCATGGCGTGGAATAG
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