mRNA_M-pyrifera_M_contig107505.1601.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107505.1601.1
Unique NamemRNA_M-pyrifera_M_contig107505.1601.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Match: A0A3N1D1K9_9ACTN (2-hydroxy-6-oxonona-2,4-dienedioate hydrolase n=1 Tax=Actinocorallia herbida TaxID=58109 RepID=A0A3N1D1K9_9ACTN)

HSP 1 Score: 160 bits (405), Expect = 1.110e-46
Identity = 77/117 (65.81%), Postives = 96/117 (82.05%), Query Frame = 1
Query:    1 LVEIMCFDK-RFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLMEISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAAEFNRLVIDFVTN 348
            LVEIM +DK RFA+ +LC  R+EAA A P+HL N++AGLPHG PVP++   E L  I AP+L +HGRDDRVV +EH+L LV+++P+SR+VL+NRCGHWAMIEHA EFNRLVIDFV N
Sbjct:  164 LVEIMVYDKARFATPELCAARSEAALARPDHLANYVAGLPHGAPVPTWVRPEDLPGIKAPSLFVHGRDDRVVSFEHSLALVANVPDSRLVLLNRCGHWAMIEHAEEFNRLVIDFVRN 280          
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Match: A0A372GFU4_9ACTN (Alpha/beta fold hydrolase n=2 Tax=Actinomadura TaxID=1988 RepID=A0A372GFU4_9ACTN)

HSP 1 Score: 160 bits (405), Expect = 1.240e-46
Identity = 77/117 (65.81%), Postives = 96/117 (82.05%), Query Frame = 1
Query:    1 LVEIMCFDK-RFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLMEISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAAEFNRLVIDFVTN 348
            LVEIMCFDK RFA+ +LC+ R++AA A PEHL+N++ GLP G P+P +A  E L  I  P LL+HGRDDRVV +E++L L+S IP+SR+V++NRCGHWAMIEHAAEFNRLVIDFV N
Sbjct:  164 LVEIMCFDKARFATPELCQARSDAALARPEHLRNYVEGLPKGAPLPVWADLESLPGIEVPTLLVHGRDDRVVPFENSLFLLSAIPDSRLVVLNRCGHWAMIEHAAEFNRLVIDFVAN 280          
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Match: UPI00197ABDB0 (alpha/beta fold hydrolase n=1 Tax=Actinomadura soli TaxID=2508997 RepID=UPI00197ABDB0)

HSP 1 Score: 154 bits (388), Expect = 4.130e-46
Identity = 74/117 (63.25%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 LVEIMCFDK-RFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLMEISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAAEFNRLVIDFVTN 348
            LVEIMCFDK RFA+ +LCR R++AA A PEHL+N++ GLP G P+P +   E L  I  P LL+HGRDDRVV +E +L+L++ IP+SR+VL+NRCGHWAMIEHA EFNRLV DF+ N
Sbjct:    4 LVEIMCFDKARFATPELCRARSDAALARPEHLRNYVEGLPKGAPLPIWVKPELLPTIQVPTLLIHGRDDRVVPFESSLYLLASIPDSRLVLLNRCGHWAMIEHADEFNRLVTDFLRN 120          
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Match: A0A0H5NH52_NOCFR (2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase n=3 Tax=Nocardia TaxID=1817 RepID=A0A0H5NH52_NOCFR)

HSP 1 Score: 159 bits (401), Expect = 4.690e-46
Identity = 75/118 (63.56%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    1 LVEIMCFDK-RFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLMEISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAAEFNRLVIDFVTNN 351
            LVE+M FDK RFA+ +L R R++AA A PEHL+N++AGLP G P+P +    +L +I+AP LL+HG+DDRVV +E+TL L++HIP+SR VL+NRCGHWAMIEHAAEFNRLV DFV+ N
Sbjct:  166 LVEVMTFDKARFATPELVRARSDAALARPEHLRNYVAGLPAGAPIPHWVDRSKLADIAAPTLLIHGKDDRVVSYENTLFLLAHIPDSRAVLLNRCGHWAMIEHAAEFNRLVADFVSGN 283          
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Match: A0A401YEJ7_9ACTN (Putative hydrolase, alpha/beta fold protein n=1 Tax=Embleya hyalina TaxID=516124 RepID=A0A401YEJ7_9ACTN)

HSP 1 Score: 158 bits (400), Expect = 6.290e-46
Identity = 74/117 (63.25%), Postives = 95/117 (81.20%), Query Frame = 1
Query:    1 LVEIMCFDK-RFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLMEISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAAEFNRLVIDFVTN 348
            LVEIMCFDK RFA+ +LCR+R+EAA A PEHL+N++ GLP G P+P +     L  I+ P L++HGRDDRVV +E +LHL++++P+SR+VL+NRCGHWAMIEHA EFNRLV DFV N
Sbjct:  164 LVEIMCFDKERFATPELCRMRSEAALARPEHLRNYVDGLPQGAPLPKWVDPRLLPAITTPTLIIHGRDDRVVSYEVSLHLLANVPDSRLVLLNRCGHWAMIEHADEFNRLVTDFVRN 280          
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Match: UPI001AE87F31 (alpha/beta fold hydrolase n=1 Tax=Pseudonocardia parietis TaxID=570936 RepID=UPI001AE87F31)

HSP 1 Score: 158 bits (400), Expect = 6.630e-46
Identity = 76/117 (64.96%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 LVEIMCFDKRFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLMEISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAAEFNRLVIDFVTNN 351
            LVEIM F   FA+D+L RLRA+ A+A P+HL+NFLAG+  G PV S A+ EQ+  I+AP LL+HGRDDRVVH+EH+L LVS IP+SR+VL NRCGHW  IEHA EFNR+V +FV NN
Sbjct:  167 LVEIMTFSPEFATDELARLRADGANARPDHLENFLAGMAGGGPVRSGATPEQVAGITAPTLLIHGRDDRVVHYEHSLRLVSTIPDSRLVLFNRCGHWTQIEHADEFNRIVAEFVRNN 283          
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Match: A0A429GBZ8_9ACTN (Alpha/beta hydrolase n=2 Tax=Actinomadura TaxID=1988 RepID=A0A429GBZ8_9ACTN)

HSP 1 Score: 156 bits (394), Expect = 5.740e-45
Identity = 76/117 (64.96%), Postives = 95/117 (81.20%), Query Frame = 1
Query:    1 LVEIMCFDK-RFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLMEISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAAEFNRLVIDFVTN 348
            LVEIMCFD  RFA+ +LCR R+ AA A PEHL+N++ GLP G P+P +A  E L  I+ P LL+HGRDDRVV +E++LHL+++IP+SR+VL+NRCGHWAMIEHA EFNRLV DFV N
Sbjct:  164 LVEIMCFDTARFATPELCRARSAAALARPEHLRNYVDGLPAGAPLPIWAKPELLPGIAVPTLLIHGRDDRVVPFENSLHLLANIPDSRLVLLNRCGHWAMIEHADEFNRLVTDFVRN 280          
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Match: A0A1I5EIP4_9PSEU (2-hydroxy-6-oxonona-2,4-dienedioate hydrolase n=1 Tax=Pseudonocardia ammonioxydans TaxID=260086 RepID=A0A1I5EIP4_9PSEU)

HSP 1 Score: 155 bits (393), Expect = 7.500e-45
Identity = 75/117 (64.10%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 LVEIMCFDKRFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLMEISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAAEFNRLVIDFVTNN 351
            LVEIM F   FA+D+L +LRA+ A+A P+HL NFLAG   G PV + A+ EQ+  I+AP LL+HGRDDRVVH+EH+L LVS IP+SR+VL+NRCGHW  IEHA EFNRLV DFV +N
Sbjct:  167 LVEIMTFSPEFATDELAQLRADGANARPDHLANFLAGAAGGGPVRTAATPEQVASIAAPTLLIHGRDDRVVHYEHSLRLVSLIPDSRLVLLNRCGHWTQIEHADEFNRLVADFVRSN 283          
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Match: A0A3A8F9I7_9GAMM (Alpha/beta fold hydrolase n=1 Tax=Acinetobacter sp. WCHAc060007 TaxID=2419605 RepID=A0A3A8F9I7_9GAMM)

HSP 1 Score: 154 bits (390), Expect = 1.960e-44
Identity = 71/115 (61.74%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 LVEIMCFDK-RFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLMEISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAAEFNRLVIDFV 342
            LVEIMCFDK RFA+ +LC+ R++AA A PEHLKN++AGLPHG P+P +    +L +I  P++ +HGRDDRVV +E +L L +++PNSR+VLIN+CGHWAMIEHA EFN LVI F+
Sbjct:  164 LVEIMCFDKARFATPELCKARSDAALARPEHLKNYVAGLPHGAPLPKWVDVTKLRDIKVPSMFIHGRDDRVVSYETSLLLTANVPNSRLVLINQCGHWAMIEHADEFNSLVIQFL 278          
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Match: A0A1V1W007_9ACTN (Alpha/beta hydrolase fold protein n=1 Tax=Nocardioides sp. PD653 TaxID=393303 RepID=A0A1V1W007_9ACTN)

HSP 1 Score: 154 bits (390), Expect = 2.410e-44
Identity = 73/117 (62.39%), Postives = 96/117 (82.05%), Query Frame = 1
Query:    1 LVEIMCFDK-RFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLMEISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAAEFNRLVIDFVTN 348
            LVEIM FDK RFA+ +L + R+EAA A P+HL+N++AGL HG P+P     E++ +I+ P LL+HG+DDRV+H+E TL L+++IPNSR VL+NRCGHWAMIEHAAEFNRLVIDF+ +
Sbjct:  171 LVEIMTFDKQRFATPELTKARSEAALARPDHLRNYVAGLAHGAPIPIRVDREKIADITVPTLLIHGKDDRVLHYEITLWLLANIPNSRAVLLNRCGHWAMIEHAAEFNRLVIDFLAH 287          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107505.1601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N1D1K9_9ACTN1.110e-4665.812-hydroxy-6-oxonona-2,4-dienedioate hydrolase n=1 ... [more]
A0A372GFU4_9ACTN1.240e-4665.81Alpha/beta fold hydrolase n=2 Tax=Actinomadura Tax... [more]
UPI00197ABDB04.130e-4663.25alpha/beta fold hydrolase n=1 Tax=Actinomadura sol... [more]
A0A0H5NH52_NOCFR4.690e-4663.562-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas... [more]
A0A401YEJ7_9ACTN6.290e-4663.25Putative hydrolase, alpha/beta fold protein n=1 Ta... [more]
UPI001AE87F316.630e-4664.96alpha/beta fold hydrolase n=1 Tax=Pseudonocardia p... [more]
A0A429GBZ8_9ACTN5.740e-4564.96Alpha/beta hydrolase n=2 Tax=Actinomadura TaxID=19... [more]
A0A1I5EIP4_9PSEU7.500e-4564.102-hydroxy-6-oxonona-2,4-dienedioate hydrolase n=1 ... [more]
A0A3A8F9I7_9GAMM1.960e-4461.74Alpha/beta fold hydrolase n=1 Tax=Acinetobacter sp... [more]
A0A1V1W007_9ACTN2.410e-4462.39Alpha/beta hydrolase fold protein n=1 Tax=Nocardio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107505contigM-pyrifera_M_contig107505:267..620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score151.0
Seed ortholog evalue3.4e-34
Seed eggNOG ortholog566461.SSFG_07755
Preferred namemhpC
KEGG rclassRC00752,RC00753,RC01337,RC02018,RC02740
KEGG koko:K05714,ko:K16050
KEGG ReactionR02603,R06789,R09883
KEGG Pathwayko00360,ko00984,ko01100,ko01120,ko01220,map00360,map00984,map01100,map01120,map01220
KEGG ModuleM00545
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alpha beta hydrolase
EggNOG OGs2H6J4@201174,COG2267@1,COG2267@2
EC3.7.1.14,3.7.1.17
COG Functional cat.I
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEbr01602,ko00000,ko00001,ko00002,ko01000
Exons1
Model size354
Cds size342
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.902734-CDS-M-pyrifera_M_contig107505:266..6081622815584.902734-CDS-M-pyrifera_M_contig107505:266..608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107505 267..608 -
1692277475.2317488-CDS-M-pyrifera_M_contig107505:266..6081692277475.2317488-CDS-M-pyrifera_M_contig107505:266..608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107505 267..608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.9121761-UTR-M-pyrifera_M_contig107505:608..6201622815584.9121761-UTR-M-pyrifera_M_contig107505:608..620Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107505 609..620 -
1692277475.243571-UTR-M-pyrifera_M_contig107505:608..6201692277475.243571-UTR-M-pyrifera_M_contig107505:608..620Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107505 609..620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107505.1601.1prot_M-pyrifera_M_contig107505.1601.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107505 267..608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107505.1601.1

>prot_M-pyrifera_M_contig107505.1601.1 ID=prot_M-pyrifera_M_contig107505.1601.1|Name=mRNA_M-pyrifera_M_contig107505.1601.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MCFDKRFASDDLCRLRAEAASAEPEHLKNFLAGLPHGWPVPSFASFEQLM
EISAPALLLHGRDDRVVHWEHTLHLVSHIPNSRMVLINRCGHWAMIEHAA
EFNRLVIDFVTNN*
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mRNA from alignment at M-pyrifera_M_contig107505:267..620-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107505.1601.1 ID=mRNA_M-pyrifera_M_contig107505.1601.1|Name=mRNA_M-pyrifera_M_contig107505.1601.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig107505:267..620- (Macrocystis pyrifera P11B4 male)
CTCGTCGAAATCATGTGTTTCGACAAGCGTTTCGCCTCCGACGACTTGTG CCGTCTGCGTGCGGAAGCCGCGAGCGCAGAACCCGAACACCTGAAGAATT TCCTTGCCGGATTACCGCACGGTTGGCCGGTACCGTCGTTTGCGAGTTTC GAACAATTGATGGAGATCAGCGCGCCCGCGCTGTTGCTGCACGGGCGTGA CGACCGCGTCGTGCACTGGGAACATACGTTGCATCTTGTCTCCCACATTC CGAATTCGCGCATGGTGTTGATCAACCGCTGTGGTCACTGGGCGATGATC GAACACGCCGCGGAATTCAATCGCCTTGTGATCGATTTCGTAACGAACAA TTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107505:267..620-

>mRNA_M-pyrifera_M_contig107505.1601.1 ID=mRNA_M-pyrifera_M_contig107505.1601.1|Name=mRNA_M-pyrifera_M_contig107505.1601.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig107505:267..620- (Macrocystis pyrifera P11B4 male)
ATGTGTTTCGACAAGCGTTTCGCCTCCGACGACTTGTGCCGTCTGCGTGC
GGAAGCCGCGAGCGCAGAACCCGAACACCTGAAGAATTTCCTTGCCGGAT
TACCGCACGGTTGGCCGGTACCGTCGTTTGCGAGTTTCGAACAATTGATG
GAGATCAGCGCGCCCGCGCTGTTGCTGCACGGGCGTGACGACCGCGTCGT
GCACTGGGAACATACGTTGCATCTTGTCTCCCACATTCCGAATTCGCGCA
TGGTGTTGATCAACCGCTGTGGTCACTGGGCGATGATCGAACACGCCGCG
GAATTCAATCGCCTTGTGATCGATTTCGTAACGAACAATTAAATGTGTTT
CGACAAGCGTTTCGCCTCCGACGACTTGTGCCGTCTGCGTGCGGAAGCCG
CGAGCGCAGAACCCGAACACCTGAAGAATTTCCTTGCCGGATTACCGCAC
GGTTGGCCGGTACCGTCGTTTGCGAGTTTCGAACAATTGATGGAGATCAG
CGCGCCCGCGCTGTTGCTGCACGGGCGTGACGACCGCGTCGTGCACTGGG
AACATACGTTGCATCTTGTCTCCCACATTCCGAATTCGCGCATGGTGTTG
ATCAACCGCTGTGGTCACTGGGCGATGATCGAACACGCCGCGGAATTCAA
TCGCCTTGTGATCGATTTCGTAACGAACAATTAA
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