mRNA_M-pyrifera_M_contig1075.1596.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1075.1596.1
Unique NamemRNA_M-pyrifera_M_contig1075.1596.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Match: D8LU36_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU36_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.870e-54
Identity = 77/104 (74.04%), Postives = 89/104 (85.58%), Query Frame = 1
Query:   13 EHLEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELGEDVPVITCMSRNKHRHCTSGSVLIDDRLSLQADWQRAGGVFIHHTSTTSSLQELKALL 324
            EHL+WM DG+ELW+ +  L PTILTGLPMG WAEPQKR WC RELGE VPVITCMSR+KH HC  G++LIDDR SL+A WQRAGGVFIHHT+ TSSL++LKA+L
Sbjct:   83 EHLDWMPDGRELWDGVAHLQPTILTGLPMGNWAEPQKRNWCKRELGEHVPVITCMSRDKHTHCRPGNILIDDRESLKAAWQRAGGVFIHHTAATSSLEKLKAIL 186          
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Match: A0A7S4GJQ1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJQ1_9EUGL)

HSP 1 Score: 142 bits (359), Expect = 1.240e-40
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   13 EHLEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELGEDVPVITCMSRNKHRHCTSGSVLIDDRLSLQADWQRAGGVFIHHTSTTSSLQELKAL 321
            + LEW  DGQ LW +I  LHP ILTGLP G WA PQKRKWCARELG    VITC +  K ++C +GS+LIDD L LQ  W++AGG+FIHHT+T  +L++L+AL
Sbjct:   82 DQLEWTEDGQRLWTAIRHLHPVILTGLPQGTWAAPQKRKWCARELGCATKVITCKALQKCKYCRTGSLLIDDNLDLQQAWEKAGGIFIHHTTTARTLRKLQAL 184          
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Match: A0A7S3XQ39_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ39_HETAK)

HSP 1 Score: 140 bits (354), Expect = 2.640e-39
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   19 LEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELGEDVPVITCMSRNKHRHCTSGSVLIDDRLSLQADWQRAGGVFIHHTSTTSSLQELKAL 321
            L WM DG+ELW+ I    PTILTGLPMG+WAE QKR WCARELG  VPV TC+SR+K R    G+VL+DDR SLQ  W  AGGVFIHH ST+ ++ +L  L
Sbjct:  144 LSWMPDGKELWDRIQSQRPTILTGLPMGRWAEAQKRAWCARELGAGVPVDTCLSRDKWRRARPGAVLVDDRFSLQEKWVEAGGVFIHHQSTSQTIDQLTDL 244          
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Match: A0A835Z4N0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N0_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.480e-37
Identity = 61/105 (58.10%), Postives = 78/105 (74.29%), Query Frame = 1
Query:   19 LEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELGE--DVPVITCMSRNKHRHC-TSGSVLIDDRLSLQADWQRAGGVFIHHTSTTSSLQELKALL 324
            L WM DG++LW  I    P ILTGLP+G+WA PQKR+WC RELG+  DVPVITCMSR+KH +C   GS+LIDDR++ +  W+ AGGVF+ HTS   S+ +L+ LL
Sbjct:   30 LPWMKDGKQLWEFIRGYKPAILTGLPLGQWAAPQKRRWCQRELGKPSDVPVITCMSRDKHTYCRVPGSILIDDRITAKEPWEAAGGVFVFHTSAQQSIADLQKLL 134          
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Match: V5WIQ5_9SPIO (Uncharacterized protein n=2 Tax=Salinispira pacifica TaxID=1307761 RepID=V5WIQ5_9SPIO)

HSP 1 Score: 132 bits (331), Expect = 3.140e-37
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   19 LEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELGEDVPVITCMSRNK-----HRHCTSGSVLIDDRLSLQADWQRAGGVFIHHTSTTSSLQEL 312
            L WM DG++LW+ +  ++P ILTGLPMG WAE QKR WCARELGEDV VITCMSR K      R  T   VLIDDRL L+  W+  GG+FIHHT    SL++L
Sbjct:   47 LHWMPDGRQLWDELKHMNPVILTGLPMGNWAEAQKRSWCARELGEDVEVITCMSREKAKKARERAGTRIPVLIDDRLRLKEAWEEMGGIFIHHTDAVKSLRQL 149          
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Match: H9UJ11_SPIAZ (Uncharacterized protein n=1 Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) TaxID=889378 RepID=H9UJ11_SPIAZ)

HSP 1 Score: 132 bits (331), Expect = 3.860e-37
Identity = 61/107 (57.01%), Postives = 72/107 (67.29%), Query Frame = 1
Query:   19 LEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELGEDVPVITCMSRNKH------RHCTSGSVLIDDRLSLQADWQRAGGVFIHHTSTTSSLQELKAL 321
            L W  DG +LW     L PTILTGLP G WAEPQKR+WCARELG  VPVITCMSR+KH      R     ++L+DDR  L   W+ AGGVFIHHTS  +S+++L  L
Sbjct:   51 LHWTPDGADLWEFARRLSPTILTGLPRGSWAEPQKREWCARELGSTVPVITCMSRDKHLQAEQARQVGMTAILVDDRQRLAEAWEAAGGVFIHHTSAAASIEQLSGL 157          
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Match: A0A660SQU3_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A660SQU3_9SPIR)

HSP 1 Score: 127 bits (319), Expect = 3.410e-35
Identity = 60/113 (53.10%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   13 EHLEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELGEDVPVITCMSRNK----------HRHCTSGSVLIDDRLSLQADWQRAGGVFIHHTSTTSSLQELKAL 321
            + L WM DG++LW    D  P ILTGLPMGKWAEPQKR WC RELG D+PVIT MSR K          +R      +LIDDRL ++  W+ AGG+FI H S   S++ELK L
Sbjct:   54 DRLGWMPDGRDLWQVAKDFQPVILTGLPMGKWAEPQKRSWCERELGPDIPVITGMSRRKAELALTWLEENRMPDKTPILIDDRLKIKEPWEAAGGIFILHLSAAGSIEELKGL 166          
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Match: A0A7Y3JH09_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetales bacterium TaxID=2026792 RepID=A0A7Y3JH09_9SPIR)

HSP 1 Score: 125 bits (315), Expect = 9.460e-35
Identity = 59/107 (55.14%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   19 LEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELGEDVPVITCMSRNKHRHCT------SGSVLIDDRLSLQADWQRAGGVFIHHTSTTSSLQELKAL 321
            L WMSDG+ELW       PTILTGLP G+WAEPQKR WC RELG DVPV+TCMSR K +  +         VL+DDRL+ Q+ W   GG+F+ H S   SL++LK L
Sbjct:   48 LAWMSDGKELWEFARRFAPTILTGLPRGQWAEPQKRSWCLRELGPDVPVLTCMSREKGKAASMVLAPDETPVLVDDRLNAQSGWLDIGGIFVLHVSAQDSLRQLKEL 154          
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Match: A0A1G3P6H1_9SPIR (Uncharacterized protein n=2 Tax=Spirochaetes TaxID=203691 RepID=A0A1G3P6H1_9SPIR)

HSP 1 Score: 122 bits (306), Expect = 2.260e-33
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   13 EHLEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELGEDVPVITCMSRNKHRHCTSGS------VLIDDRLSLQADWQRAGGVFIHHTSTTSSLQELKAL 321
            E L WMSDG+ LW+   +  P I+TGLP+G WAEPQK+ WC RELG+DV VI CM+R K +     +      VL+DDR+ ++  W+  GGVF+ HTS  SS+ +LKAL
Sbjct:   48 EKLHWMSDGKLLWDFCKNYEPIIITGLPLGSWAEPQKKAWCHRELGKDVEVIACMTREKPQKAWEVTPEDQIAVLVDDRIKIKEQWEAMGGVFVFHTSAESSISQLKAL 156          
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Match: A0A1W9N866_9SPIO (Uncharacterized protein n=1 Tax=Spirochaeta sp. LUC14_002_19_P3 TaxID=1940821 RepID=A0A1W9N866_9SPIO)

HSP 1 Score: 121 bits (303), Expect = 8.300e-33
Identity = 59/111 (53.15%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   19 LEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELGEDVPVITCMSRNK----------HRHCTSGSVLIDDRLSLQADWQRAGGVFIHHTSTTSSLQELKAL 321
            L WMSDG+ELW ++ +  P ILTGLPMG+WAE QKR WCARELG  +PVIT +SR K          H       VL+DDRL LQ  W+  GG FI+H +T SSL  L+ L
Sbjct:   53 LPWMSDGRELWEAVRNFSPAILTGLPMGQWAEGQKRSWCARELGFSIPVITGLSRKKAELAYSWLENHGITNKIPVLVDDRLKLQESWESYGGTFIYHLNTQSSLVGLREL 163          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1075.1596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU36_ECTSI1.870e-5474.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4GJQ1_9EUGL1.240e-4060.19Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3XQ39_HETAK2.640e-3962.38Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835Z4N0_9STRA1.480e-3758.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
V5WIQ5_9SPIO3.140e-3759.22Uncharacterized protein n=2 Tax=Salinispira pacifi... [more]
H9UJ11_SPIAZ3.860e-3757.01Uncharacterized protein n=1 Tax=Spirochaeta africa... [more]
A0A660SQU3_9SPIR3.410e-3553.10Uncharacterized protein n=1 Tax=Spirochaetes bacte... [more]
A0A7Y3JH09_9SPIR9.460e-3555.14Uncharacterized protein n=1 Tax=Spirochaetales bac... [more]
A0A1G3P6H1_9SPIR2.260e-3350.46Uncharacterized protein n=2 Tax=Spirochaetes TaxID... [more]
A0A1W9N866_9SPIO8.300e-3353.15Uncharacterized protein n=1 Tax=Spirochaeta sp. LU... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1075contigM-pyrifera_M_contig1075:11586..12447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score129.4
Seed ortholog evalue1e-27
Seed eggNOG ortholog1307761.L21SP2_1636
Hectar predicted targeting categoryother localisation
EggNOG OGs2D94Q@1,32TSM@2
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-16_000080.1
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons3
Model size324
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1075.1596.1prot_M-pyrifera_M_contig1075.1596.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1075 11586..12447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.5657792-CDS-M-pyrifera_M_contig1075:11585..116791622815584.5657792-CDS-M-pyrifera_M_contig1075:11585..11679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1075 11586..11679 -
1692277475.0237885-CDS-M-pyrifera_M_contig1075:11585..116791692277475.0237885-CDS-M-pyrifera_M_contig1075:11585..11679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1075 11586..11679 -
1622815584.5788155-CDS-M-pyrifera_M_contig1075:11991..120981622815584.5788155-CDS-M-pyrifera_M_contig1075:11991..12098Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1075 11992..12098 -
1692277475.0362432-CDS-M-pyrifera_M_contig1075:11991..120981692277475.0362432-CDS-M-pyrifera_M_contig1075:11991..12098Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1075 11992..12098 -
1622815584.590357-CDS-M-pyrifera_M_contig1075:12324..124471622815584.590357-CDS-M-pyrifera_M_contig1075:12324..12447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1075 12325..12447 -
1692277475.04596-CDS-M-pyrifera_M_contig1075:12324..124471692277475.04596-CDS-M-pyrifera_M_contig1075:12324..12447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1075 12325..12447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1075.1596.1

>prot_M-pyrifera_M_contig1075.1596.1 ID=prot_M-pyrifera_M_contig1075.1596.1|Name=mRNA_M-pyrifera_M_contig1075.1596.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MSQDEHLEWMSDGQELWNSIVDLHPTILTGLPMGKWAEPQKRKWCARELG
EDVPVITCMSRNKHRHCTSGSVLIDDRLSLQADWQRAGGVFIHHTSTTSS
LQELKALL
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mRNA from alignment at M-pyrifera_M_contig1075:11586..12447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1075.1596.1 ID=mRNA_M-pyrifera_M_contig1075.1596.1|Name=mRNA_M-pyrifera_M_contig1075.1596.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=862bp|location=Sequence derived from alignment at M-pyrifera_M_contig1075:11586..12447- (Macrocystis pyrifera P11B4 male)
ATGTCACAAGACGAACACCTCGAGTGGATGTCGGATGGTCAAGAATTGTG GAATAGCATCGTAGATCTCCACCCGACGATCCTCACGGGACTGCCAATGG GCAAATGGGCAGAGCCACAAAAGGTAGGTGTTTGGGATCGATTAGTAGTG TTCCGGTCGTACGCGTTTTATACTCGCAATATTCCTCGAACGCGTAGAAA TGCTCTTCAGAATCTTGGCCGCGTCATATTTACTGTACGGTAACTCGGGT CGGCGTTGATTATATTTTACTTGTTTTTCAGCTCTGTCTGCAGTAGTTGA TGCGCCGAAATGATGGATCATGACGGAGCTTTTCTCTTTGTTTTGTCAGA GAAAATGGTGCGCACGAGAGCTGGGAGAAGATGTGCCGGTGATCACCTGC ATGTCCAGAAACAAGCACCGACACTGCACCTCTGGCAGCGTACTCATCGA CGACAGGTAGGTGTGGCCTGGTGTGCTTAGCGTAGGAGTTTCCGTGTTTC GCCTCGCATCCTATGGAGTAGCTGTCGCATTTCTGCTGTTAGCACAGGGC CTGGCGATCCTGGAGTGTTTTCGATGCGGTGACACTTACCAGGTATACAT AGGTAGTTTGCAAAAAAGTTCGCTTCGGTAGATGACGCTTTGCAAAGGTT TCCCCTCTCTTCGCCCCTGCTCGATTTACAGGTCCGTCGTTCCACGCTCA ATTTTGGCTATAACTGTTGAATACACTTCCTATCTTTTATGTGTGATATC GTACGTGTCTGCCGAAAGGTTATCTTTGCAGGCTGACTGGCAGAGGGCAG GCGGTGTATTCATCCACCATACTAGCACAACATCTTCCCTCCAGGAGCTG AAGGCGTTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1075:11586..12447-

>mRNA_M-pyrifera_M_contig1075.1596.1 ID=mRNA_M-pyrifera_M_contig1075.1596.1|Name=mRNA_M-pyrifera_M_contig1075.1596.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig1075:11586..12447- (Macrocystis pyrifera P11B4 male)
ATGTCACAAGACGAACACCTCGAGTGGATGTCGGATGGTCAAGAATTGTG
GAATAGCATCGTAGATCTCCACCCGACGATCCTCACGGGACTGCCAATGG
GCAAATGGGCAGAGCCACAAAAGATGTCACAAGACGAACACCTCGAGTGG
ATGTCGGATGGTCAAGAATTGTGGAATAGCATCGTAGATCTCCACCCGAC
GATCCTCACGGGACTGCCAATGGGCAAATGGGCAGAGCCACAAAAGAGAA
AATGGTGCGCACGAGAGCTGGGAGAAGATGTGCCGGTGATCACCTGCATG
TCCAGAAACAAGCACCGACACTGCACCTCTGGCAGCGTACTCATCGACGA
CAGAGAAAATGGTGCGCACGAGAGCTGGGAGAAGATGTGCCGGTGATCAC
CTGCATGTCCAGAAACAAGCACCGACACTGCACCTCTGGCAGCGTACTCA
TCGACGACAGGTTATCTTTGCAGGCTGACTGGCAGAGGGCAGGCGGTGTA
TTCATCCACCATACTAGCACAACATCTTCCCTCCAGGAGCTGAAGGCGTT
GCTCGTTATCTTTGCAGGCTGACTGGCAGAGGGCAGGCGGTGTATTCATC
CACCATACTAGCACAACATCTTCCCTCCAGGAGCTGAAGGCGTTGCTC
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