mRNA_M-pyrifera_M_contig107487.1593.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107487.1593.1
Unique NamemRNA_M-pyrifera_M_contig107487.1593.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Match: A0A7S0JXF2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JXF2_CAFRO)

HSP 1 Score: 105 bits (261), Expect = 3.100e-23
Identity = 56/125 (44.80%), Postives = 71/125 (56.80%), Query Frame = 1
Query:  151 QLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVG------------VPVLACPQSTFKLHPAFDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVPRQPTSLAFMELLS 489
            QL+R  GQGIWYD +++    R GL   FG+P G              +L C QS+FKL P  DAV+AA+LR+LP A  V +  R+QSW  +L  RW  +  DV  RV+ VPRQ    AF E LS
Sbjct:  284 QLLRFQGQGIWYDPLELPPPGRLGLNSRFGLPRGGGTGCAASDPACSVLLGCMQSSFKLQPGLDAVLAATLRALPGARLVVVYARQQSWQGRLERRWRATMSDVMDRVLVVPRQANGPAFFEALS 408          
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Match: A0A5A8DNB9_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DNB9_CAFRO)

HSP 1 Score: 105 bits (261), Expect = 3.520e-23
Identity = 56/125 (44.80%), Postives = 71/125 (56.80%), Query Frame = 1
Query:  151 QLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVG------------VPVLACPQSTFKLHPAFDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVPRQPTSLAFMELLS 489
            QL+R  GQGIWYD +++    R GL   FG+P G              +L C QS+FKL P  DAV+AA+LR+LP A  V +  R+QSW  +L  RW  +  DV  RV+ VPRQ    AF E LS
Sbjct:  577 QLLRFQGQGIWYDPLELPPPGRLGLNSRFGLPRGGGTGCAASDPACSVLLGCMQSSFKLQPGLDAVLAATLRALPGARLVVVYARQQSWQGRLERRWRATMSDVMDRVLVVPRQANGPAFFEALS 701          
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Match: A0A3E0PGT3_9BACT (TIGR03032 family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PGT3_9BACT)

HSP 1 Score: 104 bits (259), Expect = 6.580e-23
Identity = 59/155 (38.06%), Postives = 81/155 (52.26%), Query Frame = 1
Query:    1 RLARVQVAFWGTPATSGRNAMDYFFSGDRMELPQHSAGQEEGGRREDQGGQLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVGVPVLACPQSTFKLHPAFDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVPRQPTS 465
            RLA VQ   WG P T+G  +MDYF SG  ++ P       E         +L R+   G +Y    +  D     R  FG+     V  CPQ+ FKLHP FDAV+A  LR  P    + +EGR  +WTR ++ER+  + PDVA R+ ++P QP +
Sbjct:  679 RLAPVQCVTWGHPVTTGNASMDYFVSGRHLDTPGAEVHYTE---------RLARLANLGTYYYRPRLEGDRS---REWFGLDPDRHVYLCPQTLFKLHPEFDAVLAEILRRDPHGELILLEGRRPTWTRLVQERFARTMPDVADRIRFLPPQPNA 821          
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Match: A0A7C4IE99_9BACT (Tetratricopeptide repeat protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C4IE99_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 2.250e-20
Identity = 61/153 (39.87%), Postives = 77/153 (50.33%), Query Frame = 1
Query:    1 RLARVQVAFWGTPATSGRNAMDYFFSGDRMELPQHSAGQEEGGRREDQGGQLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVGVPVLACPQSTFKLHPAFDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVPRQP 459
            RLA VQ   WG P T+G   MDYF SG  ++     AG++    R      LVR+    I YD        R    G FG+P    +  CPQS FK HP FDAV+A  LR  P  + V +E  E +WTR LR R   + PD   R+ ++P QP
Sbjct:  458 RLAPVQCVTWGHPDTTGSPEMDYFISGTDLDT---DAGRQFYTER------LVRLAHLPIVYDRPVTPGRPR----GHFGLPDDAHLYGCPQSLFKFHPDFDAVLAGILRRDPRGMLVLLEAHEPNWTRILRTRLAAAMPDAIERIRFLPAQP 597          
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Match: UPI00142F77DC (tetratricopeptide repeat protein n=1 Tax=Mariprofundus ferrooxydans TaxID=314344 RepID=UPI00142F77DC)

HSP 1 Score: 89.7 bits (221), Expect = 7.970e-18
Identity = 55/163 (33.74%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    1 RLARVQVAFWGTPATSGRNAMDYFFSGDRMELPQHSAGQEEGGRREDQGGQLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVGVPVLACPQSTFKLHPAFDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVPRQPTSLAFMELLS 489
            RLA VQV  WG P T+G + +DYF S   +E    +A Q+   R       L+R+     +Y+ +   ++    +  +  +P    +  CPQS FKLHP FDAV++  +   P    V +EGR  +W+  LRERW  + P +  +V+++P QP    FM L++
Sbjct:  422 RLAPVQVVSWGHPDTTGIDTLDYFVSSSLIEPD--NADQQYSER-------LIRLNRLPCYYEPILAPTEWPDRMSMM--LPEKATLYGCPQSLFKLHPDFDAVLSEIVEKDPKGRIVLVEGRSPAWSALLRERWARNHPILNEKVLFLPMQPWD-RFMALMA 572          
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Match: A0A7V7KBX8_9PROT (Glyco_transf_41 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7KBX8_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 1.400e-17
Identity = 56/163 (34.36%), Postives = 80/163 (49.08%), Query Frame = 1
Query:    1 RLARVQVAFWGTPATSGRNAMDYFFSGDRMELPQHSAGQEEGGRREDQGGQLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVGVPVLACPQSTFKLHPAFDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVPRQPTSLAFMELLS 489
            RLA VQ   WG P T+G   +DYF S + ME  +      E          L R+     +Y   ++    +   R  FG+  G       Q  FKLHP FDA++AA LR+ P    + + G E+SW R L  R++ + PDV  R+ ++PRQP    F+ LL+
Sbjct:  301 RLAPVQCVSWGHPVTTGNPNLDYFVSAEAMESEEADQHYRE---------TLYRLKTLPTYYYQPEIGEKPKS--RADFGLDEGRRYYLIAQYLFKLHPDFDAILAAILRADPQGRLLVVSGVEKSWNRFLMARFQKNMPDVTERIQFIPRQPQK-DFLALLA 451          
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Match: A0A1H6HF98_MAGFU (Predicted O-linked N-acetylglucosamine transferase, SPINDLY family n=1 Tax=Magnetospirillum fulvum TaxID=1082 RepID=A0A1H6HF98_MAGFU)

HSP 1 Score: 88.2 bits (217), Expect = 2.750e-17
Identity = 54/161 (33.54%), Postives = 75/161 (46.58%), Query Frame = 1
Query:    1 RLARVQVAFWGTPATSGRNAMDYFFSGDRMELPQHSAGQEEGGRREDQGGQLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVGVPVLACPQSTFKLHPAFDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVPRQPTSLAFMEL 483
            RLA VQ   WG P T+G +++DYF S   +E         E         +L+R+     +Y      +D     R   G+P    +  CPQS FK HP FDAV+AA     P+   V I G   SW  Q+R RW+ + P +  R +++PR P     M L
Sbjct:  425 RLAPVQAVMWGHPDTTGLDSIDYFVSSKSIEPDNAQDVYTE---------RLIRLDRLNCYYTPPQAPTDILS--RAELGLPETGILYGCPQSLFKFHPDFDAVLAAIALGDPTGRIVLIAGDNASWAEQIRARWQKTDPILLERTLFLPRMPRDRFVMML 574          
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Match: A0A7X2FVL8_9PROT (Tetratricopeptide repeat protein n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2FVL8_9PROT)

HSP 1 Score: 87.8 bits (216), Expect = 3.780e-17
Identity = 58/150 (38.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query:    1 RLARVQVAFWGTPATSGRNAMDYFFSGDRMELPQHSAGQEEGGRREDQGGQLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVGVPVLACPQSTFKLHPAFDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVP 450
            RLA VQ   WG P TSG  AMD FFSG  +E P   A   E         +L+ + G    Y+   V  D   G R  FG      +  CPQS FK+HPAFD V+A+   S P A  V IEG  + WT  L+ R+  +   +A+R  ++P
Sbjct:  497 RLAPVQAMTWGHPETSGIAAMDLFFSGKHLETPGSEAQYRE---------RLIGLDGLPTCYER-PVLPDGL-GDRSRFGFSADSHIYLCPQSLFKIHPAFDQVLASIAESDPLAEIVFIEGAHKHWTESLQARFAATSDLLAARTRFMP 635          
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Match: A0A1G2W642_9CAUL (Protein O-GlcNAc transferase n=1 Tax=Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_69_31 TaxID=1801944 RepID=A0A1G2W642_9CAUL)

HSP 1 Score: 87.4 bits (215), Expect = 4.960e-17
Identity = 55/150 (36.67%), Postives = 72/150 (48.00%), Query Frame = 1
Query:    1 RLARVQVAFWGTPATSGRNAMDYFFSGDRMELPQHSAGQEEGGRREDQGGQLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVGVPVLACPQSTFKLHPAFDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVP 450
            RLA VQ   WG P T+G + +DYF S    E P+     +E         +LV +     +Y A           R   G+P G  +  CPQS FK HP FDAV+ +  R  P+A  V I+ R  SWT  LR RW  S P +  RV ++P
Sbjct:  342 RLAPVQATSWGHPDTTGLSTIDYFLSAHSAEPPEAQDQYQE---------RLVLLPRLPSYYQAPGPIPVVE---RAALGLPEGGTLYGCPQSLFKFHPDFDAVLGSICRQDPTARIVLIQARNPSWTAALRARWARSEPILLERVHFLP 479          
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Match: A0A328AZK9_9CAUL (Glyco_transf_41 domain-containing protein n=1 Tax=Phenylobacterium hankyongense TaxID=1813876 RepID=A0A328AZK9_9CAUL)

HSP 1 Score: 85.5 bits (210), Expect = 2.400e-16
Identity = 53/154 (34.42%), Postives = 71/154 (46.10%), Query Frame = 1
Query:    1 RLARVQVAFWGTPATSGRNAMDYFFSGDRMELPQHSAGQEEGGRREDQGGQLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVGVPVLACPQSTFKLHPAFDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVPRQPT 462
            RLA VQ   WG P T+G + MDYF S   +E     A   E         +L  +G     Y A  +   S    R   G+P    +  CPQS FK+HPAFD V+A   +  P    V ++  +  WT  L+ RW    P +  RV ++PR PT
Sbjct:  461 RLAPVQATSWGHPNTTGVDTMDYFVSAASLEPDDGPAAYVE---------RLALLGRLPTCYPAPSLGDASLS--RADLGLPASGVLYGCPQSFFKIHPAFDQVLADIAQGDPDGHIVLLDPAKPHWTELLKTRWRAHHPALLERVRFLPRMPT 603          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107487.1593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0JXF2_CAFRO3.100e-2344.80Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8DNB9_CAFRO3.520e-2344.80Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A3E0PGT3_9BACT6.580e-2338.06TIGR03032 family protein n=1 Tax=Planctomycetes ba... [more]
A0A7C4IE99_9BACT2.250e-2039.87Tetratricopeptide repeat protein n=1 Tax=Phycispha... [more]
UPI00142F77DC7.970e-1833.74tetratricopeptide repeat protein n=1 Tax=Mariprofu... [more]
A0A7V7KBX8_9PROT1.400e-1734.36Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
A0A1H6HF98_MAGFU2.750e-1733.54Predicted O-linked N-acetylglucosamine transferase... [more]
A0A7X2FVL8_9PROT3.780e-1738.67Tetratricopeptide repeat protein n=1 Tax=Alphaprot... [more]
A0A1G2W642_9CAUL4.960e-1736.67Protein O-GlcNAc transferase n=1 Tax=Phenylobacter... [more]
A0A328AZK9_9CAUL2.400e-1634.42Glyco_transf_41 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107487contigM-pyrifera_M_contig107487:2..616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.9
Seed ortholog evalue5.8e-19
Seed eggNOG ortholog1123242.JH636435_gene2222
KEGG koko:K19127
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4915)
EggNOG OGs2IWY1@203682,COG0457@1,COG0457@2,COG3914@1,COG3914@2
COG Functional cat.O
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02048
Exons2
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.4142034-CDS-M-pyrifera_M_contig107487:1..3401622815584.4142034-CDS-M-pyrifera_M_contig107487:1..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107487 2..340 -
1692277474.964559-CDS-M-pyrifera_M_contig107487:1..3401692277474.964559-CDS-M-pyrifera_M_contig107487:1..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107487 2..340 -
1622815584.4300134-CDS-M-pyrifera_M_contig107487:466..6161622815584.4300134-CDS-M-pyrifera_M_contig107487:466..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107487 467..616 -
1692277474.9813273-CDS-M-pyrifera_M_contig107487:466..6161692277474.9813273-CDS-M-pyrifera_M_contig107487:466..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107487 467..616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107487.1593.1prot_M-pyrifera_M_contig107487.1593.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107487 2..616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107487.1593.1

>prot_M-pyrifera_M_contig107487.1593.1 ID=prot_M-pyrifera_M_contig107487.1593.1|Name=mRNA_M-pyrifera_M_contig107487.1593.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
RLARVQVAFWGTPATSGRNAMDYFFSGDRMELPQHSAGQEEGGRREDQGG
QLVRVGGQGIWYDAVDVHSDSRQGLRGVFGIPVGVPVLACPQSTFKLHPA
FDAVIAASLRSLPSAVFVAIEGREQSWTRQLRERWETSFPDVASRVIWVP
RQPTSLAFMELLS
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mRNA from alignment at M-pyrifera_M_contig107487:2..616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107487.1593.1 ID=mRNA_M-pyrifera_M_contig107487.1593.1|Name=mRNA_M-pyrifera_M_contig107487.1593.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig107487:2..616- (Macrocystis pyrifera P11B4 male)
AGACTTGCGAGAGTGCAAGTAGCCTTCTGGGGCACACCAGCCACCTCTGG GAGGAACGCAATGGACTACTTCTTCTCTGGAGACAGGATGGAGCTGCCCC AGCACAGTGCTGGACAAGAAGAGGGCGGGCGAAGAGAGGATCAAGGAGGT GTGGAGGAGAATGGTGGGGTGGAAAAAATTGGTGCAGCTGGTGTTGTTGT TGATGTAACTCACCACCCACCCCACTCTTCCCCTCCCTCTCCCCTCCGTT CTCGCCTTCGTTCACCTTACAGTGAGCAGTTGGTTCGGGTGGGTGGGCAG GGGATTTGGTATGATGCTGTGGATGTTCATAGCGATTCTCGACAAGGGTT GCGGGGTGTGTTTGGGATTCCTGTTGGGGTGCCTGTGTTGGCTTGTCCGC AGTCCACATTCAAGCTCCATCCTGCGTTTGATGCAGTGATTGCAGCTTCA TTGCGTTCTTTACCTTCTGCTGTGTTTGTGGCGATTGAGGGACGGGAGCA ATCGTGGACAAGGCAGCTTCGAGAGCGTTGGGAGACTAGTTTTCCTGACG TGGCGTCACGGGTGATTTGGGTACCGAGACAACCAACTTCGCTGGCGTTT ATGGAGCTCTTGTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107487:2..616-

>mRNA_M-pyrifera_M_contig107487.1593.1 ID=mRNA_M-pyrifera_M_contig107487.1593.1|Name=mRNA_M-pyrifera_M_contig107487.1593.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig107487:2..616- (Macrocystis pyrifera P11B4 male)
AGACTTGCGAGAGTGCAAGTAGCCTTCTGGGGCACACCAGCCACCTCTGG
GAGGAACGCAATGGACTACTTCTTCTCTGGAGACAGGATGGAGCTGCCCC
AGCACAGTGCTGGACAAGAAGAGGGCGGGCGAAGAGAGGATCAAGGAGGT
AGACTTGCGAGAGTGCAAGTAGCCTTCTGGGGCACACCAGCCACCTCTGG
GAGGAACGCAATGGACTACTTCTTCTCTGGAGACAGGATGGAGCTGCCCC
AGCACAGTGCTGGACAAGAAGAGGGCGGGCGAAGAGAGGATCAAGGAGGT
CAGTTGGTTCGGGTGGGTGGGCAGGGGATTTGGTATGATGCTGTGGATGT
TCATAGCGATTCTCGACAAGGGTTGCGGGGTGTGTTTGGGATTCCTGTTG
GGGTGCCTGTGTTGGCTTGTCCGCAGTCCACATTCAAGCTCCATCCTGCG
TTTGATGCAGTGATTGCAGCTTCATTGCGTTCTTTACCTTCTGCTGTGTT
TGTGGCGATTGAGGGACGGGAGCAATCGTGGACAAGGCAGCTTCGAGAGC
GTTGGGAGACTAGTTTTCCTGACGTGGCGTCACGGGTGATTTGGGTACCG
AGACAACCAACTTCGCTGGCGTTTATGGAGCTCTTGTCTCAGTTGGTTCG
GGTGGGTGGGCAGGGGATTTGGTATGATGCTGTGGATGTTCATAGCGATT
CTCGACAAGGGTTGCGGGGTGTGTTTGGGATTCCTGTTGGGGTGCCTGTG
TTGGCTTGTCCGCAGTCCACATTCAAGCTCCATCCTGCGTTTGATGCAGT
GATTGCAGCTTCATTGCGTTCTTTACCTTCTGCTGTGTTTGTGGCGATTG
AGGGACGGGAGCAATCGTGGACAAGGCAGCTTCGAGAGCGTTGGGAGACT
AGTTTTCCTGACGTGGCGTCACGGGTGATTTGGGTACCGAGACAACCAAC
TTCGCTGGCGTTTATGGAGCTCTTGTCT
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