mRNA_M-pyrifera_M_contig107457.1588.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107457.1588.1
Unique NamemRNA_M-pyrifera_M_contig107457.1588.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Match: A9VE06_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VE06_MONBE)

HSP 1 Score: 214 bits (546), Expect = 3.320e-64
Identity = 104/172 (60.47%), Postives = 131/172 (76.16%), Query Frame = 1
Query:    1 NEQQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENVHPRVLADGFEVARTVALKTLDAVKLDKEVDKELLLSVARTSLXXXXXXXXXXXXXXXVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDHGPRHPRMPTKLTNCHILTCNIS 516
            N+ QIQHPTASLIARAATAQDDITGDGT+S+VL+IGE LKQ E ++SE +HPR++ DGFE A+ VAL+ LD +K D+EVD+ELL  VARTSL               V +AVL I+Q   P+DLFM+E+MTM+H+  TDT L+RG+VLDHG RHP MP +L N ++LTCN+S
Sbjct:   65 NDMQIQHPTASLIARAATAQDDITGDGTTSNVLLIGELLKQAELYISEGLHPRLVVDGFEKAKDVALEVLDKIKSDREVDRELLCKVARTSLRTKVSQKMADQLTETVADAVLAIRQDKSPIDLFMIEIMTMKHKTETDTSLIRGIVLDHGSRHPDMPKRLENAYVLTCNVS 236          
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Match: A0A1R2C0S4_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C0S4_9CILI)

HSP 1 Score: 208 bits (529), Expect = 1.070e-61
Identity = 102/171 (59.65%), Postives = 128/171 (74.85%), Query Frame = 1
Query:    4 EQQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENVHPRVLADGFEVARTVALKTLDAVKLDKEVDKELLLSVARTSLXXXXXXXXXXXXXXXVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDHGPRHPRMPTKLTNCHILTCNIS 516
            E QIQHPTA++IARAATAQD+I GDGT+S+VL IGE ++Q ERFL E VHPRVL DGF+ AR +ALK L+ +K++KEVD+ELLL+VA++SL               VT+AVL I Q    +DL M+E+M M H+  TDTRLV+GLVLDHG RHP  PTKL NC++L CNI+
Sbjct:   66 EMQIQHPTAAMIARAATAQDEIVGDGTTSNVLFIGELMRQAERFLGEGVHPRVLVDGFDKARAIALKVLETLKVEKEVDRELLLNVAKSSLGTKLIPEMAKKLTEIVTDAVLAISQTGKSIDLHMIEIMHMPHKMDTDTRLVKGLVLDHGSRHPETPTKLKNCYVLCCNIN 236          
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Match: A0A821AR11_9NEOB ((mimic poison frog) hypothetical protein n=2 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821AR11_9NEOB)

HSP 1 Score: 199 bits (505), Expect = 1.110e-61
Identity = 95/172 (55.23%), Postives = 128/172 (74.42%), Query Frame = 1
Query:    1 NEQQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENVHPRVLADGFEVARTVALKTLDAVKLDKEVDKELLLSVARTSLXXXXXXXXXXXXXXXVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDHGPRHPRMPTKLTNCHILTCNIS 516
            +E QIQHPTASLIA+ ATAQDD+TGDGT+S VLIIGE LKQ + ++SE +HPR++ +GFE A+  AL+ L+ VK+ KE+D+E L+ VARTSL               V +++L I++ D P+DLFMVE+M M+H++ TDT L+RGLVLDHG RHP M  ++ N +ILTCN+S
Sbjct:   22 HEMQIQHPTASLIAKVATAQDDVTGDGTTSKVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIRKKDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVENAYILTCNVS 193          
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Match: H3G985_PHYRM (Uncharacterized protein n=23 Tax=Oomycota TaxID=4762 RepID=H3G985_PHYRM)

HSP 1 Score: 207 bits (528), Expect = 1.770e-61
Identity = 102/175 (58.29%), Postives = 133/175 (76.00%), Query Frame = 1
Query:    1 NEQQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENVHPRVLADGFEVARTVALKTLDAVKLDKE---VDKELLLSVARTSLXXXXXXXXXXXXXXXVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDHGPRHPRMPTKLTNCHILTCNIS 516
            +E QIQHPTA+LIARAATAQDD+TGDGT+S+VL IGE LKQ ERFL++ +HPR+L++GFE+A+  AL+ LD++K   E    D+ELL SVARTSL               +T+AVL I  P+ P+DL M+E+M M H++++DTRLV+GLVLDHG RHP MPT L NC+I+TCN+S
Sbjct:   64 HEMQIQHPTAALIARAATAQDDVTGDGTTSTVLFIGELLKQAERFLADGLHPRILSEGFELAKDEALRVLDSMKTTPEDILKDRELLCSVARTSLRTKLDQKLADQLTEIITDAVLTIAAPERPIDLHMIEIMHMMHQSSSDTRLVKGLVLDHGSRHPEMPTSLENCYIMTCNVS 238          
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Match: A0A7N4PKW5_SARHA (Uncharacterized protein n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=A0A7N4PKW5_SARHA)

HSP 1 Score: 202 bits (515), Expect = 9.050e-61
Identity = 95/172 (55.23%), Postives = 130/172 (75.58%), Query Frame = 1
Query:    1 NEQQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENVHPRVLADGFEVARTVALKTLDAVKLDKEVDKELLLSVARTSLXXXXXXXXXXXXXXXVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDHGPRHPRMPTKLTNCHILTCNIS 516
            +E QIQHPTASLIA+ ATAQDDI GDGT+S+VLIIGE LKQ + ++SE +HPR++ +GFE A+T AL+ LD +K+ KE+D+E+L+ VARTSL               V +++L +++P  P+DLFMVE+M M+H++ TDT L+RGLVLDHG RHP M  +L + +ILTCN+S
Sbjct:   55 HEMQIQHPTASLIAKVATAQDDIPGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKTKALEVLDQIKISKEIDREILMDVARTSLCTKVNADLADVLTEAVVDSILAVRRPGEPVDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRLEDAYILTCNVS 226          
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Match: UPI001873A370 (T-complex protein 1 n=1 Tax=Colletotrichum truncatum TaxID=5467 RepID=UPI001873A370)

HSP 1 Score: 202 bits (515), Expect = 9.750e-61
Identity = 102/171 (59.65%), Postives = 126/171 (73.68%), Query Frame = 1
Query:    4 EQQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENVHPRVLADGFEVARTVALKTLDAVKLDKEVDKELLLSVARTSLXXXXXXXXXXXXXXXVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDHGPRHPRMPTKLTNCHILTCNIS 516
            E QIQ+PTA +IARAATAQDDI GDGT+S+VL+IGE LKQ +R++SE +HPR++ DGFE+A+  ALK LD  KLDKEVD+ELLLSVARTSL               + +AVL I Q     DL MVE+M MQHR A+DT+L++GL LDHG RHP MP +L N +ILT N+S
Sbjct:   18 EMQIQNPTAVMIARAATAQDDICGDGTTSAVLLIGELLKQADRYISEGLHPRIITDGFEIAKNEALKFLDGFKLDKEVDRELLLSVARTSLSTKLNSSLAAKLTPDIVDAVLAIYQAPAKPDLHMVEIMKMQHRTASDTQLIKGLALDHGARHPDMPKRLENAYILTMNVS 188          
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Match: A0A480RT41_PIG (T-complex protein 1 subunit zeta isoform a n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A480RT41_PIG)

HSP 1 Score: 198 bits (503), Expect = 3.510e-60
Identity = 96/172 (55.81%), Postives = 129/172 (75.00%), Query Frame = 1
Query:    1 NEQQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENVHPRVLADGFEVARTVALKTLDAVKLDKEVDKELLLSVARTSLXXXXXXXXXXXXXXXVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDHGPRHPRMPTKLTNCHILTCNIS 516
            +E QIQHPTASLIA+ ATAQDDITGDGT+S+VLIIGE LKQ + ++SE +HPR++ +GFE A+  AL+ L+ VK+ KE+D+E L+ VARTSL               V ++VL I++ D P+DLFMVE+M M+H++ TDT L+RGLVLDHG RHP M  ++ + +ILTCN+S
Sbjct:   65 HEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSVLAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVS 236          
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Match: A0A834ER87_9CHIR (Chaperonin containing TCP1 subunit 6A n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A834ER87_9CHIR)

HSP 1 Score: 197 bits (501), Expect = 4.320e-60
Identity = 95/170 (55.88%), Postives = 128/170 (75.29%), Query Frame = 1
Query:    7 QQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENVHPRVLADGFEVARTVALKTLDAVKLDKEVDKELLLSVARTSLXXXXXXXXXXXXXXXVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDHGPRHPRMPTKLTNCHILTCNIS 516
            QQIQHPTASLIA+ ATAQDDITGDGT+S+VLIIGE LKQ + ++SE +HPR++ +GFE A+  AL+ L+ VK+ KE+D+E L+ VARTSL               V +++L I++ D P+DLFMVE+M M+H++ TDT L+RGLVLDHG RHP M  ++ + +ILTCN+S
Sbjct:   36 QQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIVTEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVS 205          
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Match: B3SAN6_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SAN6_TRIAD)

HSP 1 Score: 204 bits (518), Expect = 4.340e-60
Identity = 97/172 (56.40%), Postives = 132/172 (76.74%), Query Frame = 1
Query:    1 NEQQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENVHPRVLADGFEVARTVALKTLDAVKLDKEVDKELLLSVARTSLXXXXXXXXXXXXXXXVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDHGPRHPRMPTKLTNCHILTCNIS 516
            +E QIQHPTASLIA+ ATAQDDITGDGT+S+VL+IGE LKQ + ++SE +HPR++A+GF++A+  AL+ LD VK+  ++D++ L++VART+L               + +AVL I++PD P+DL MVEVM+MQH+   DTRLVRGLVLDHG RHP M  K++N +ILTCN+S
Sbjct:   65 HEMQIQHPTASLIAKVATAQDDITGDGTTSNVLVIGELLKQADHYVSEGLHPRIIAEGFDLAKKRALEVLDEVKVQSDMDRDALINVARTALRTKLAVEIADNLTEIIVDAVLAIRKPDQPIDLHMVEVMSMQHQTGIDTRLVRGLVLDHGSRHPDMKKKVSNAYILTCNVS 236          
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Match: A0A6A6YYI2_9PEZI (T-complex protein 1 zeta subunit n=3 Tax=Pleosporomycetidae TaxID=451868 RepID=A0A6A6YYI2_9PEZI)

HSP 1 Score: 204 bits (518), Expect = 5.210e-60
Identity = 102/171 (59.65%), Postives = 126/171 (73.68%), Query Frame = 1
Query:    4 EQQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENVHPRVLADGFEVARTVALKTLDAVKLDKEVDKELLLSVARTSLXXXXXXXXXXXXXXXVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDHGPRHPRMPTKLTNCHILTCNIS 516
            E QIQ+PTA +IARAATAQDDITGDGT+S VL++GE LKQ +R++SE +HPRV+ DG+E+A+T ALK LD  KL+KEVD+ELLLSVARTSL               + +AVL I  P    DL M+E+MTMQHR A DT+L+RGL LDHG RHP MP ++ N  ILT N+S
Sbjct:   66 EMQIQNPTAVMIARAATAQDDITGDGTTSVVLLVGELLKQADRYISEGLHPRVITDGYEIAKTEALKFLDGFKLNKEVDRELLLSVARTSLSTKLNSTLAEQLTPDIVDAVLTIYNPPAKPDLHMIEIMTMQHRTAADTQLIRGLALDHGARHPDMPKRVENAFILTLNVS 236          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107457.1588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9VE06_MONBE3.320e-6460.47Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A1R2C0S4_9CILI1.070e-6159.65Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A821AR11_9NEOB1.110e-6155.23(mimic poison frog) hypothetical protein n=2 Tax=R... [more]
H3G985_PHYRM1.770e-6158.29Uncharacterized protein n=23 Tax=Oomycota TaxID=47... [more]
A0A7N4PKW5_SARHA9.050e-6155.23Uncharacterized protein n=1 Tax=Sarcophilus harris... [more]
UPI001873A3709.750e-6159.65T-complex protein 1 n=1 Tax=Colletotrichum truncat... [more]
A0A480RT41_PIG3.510e-6055.81T-complex protein 1 subunit zeta isoform a n=2 Tax... [more]
A0A834ER87_9CHIR4.320e-6055.88Chaperonin containing TCP1 subunit 6A n=1 Tax=Phyl... [more]
B3SAN6_TRIAD4.340e-6056.40Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A0A6A6YYI2_9PEZI5.210e-6059.65T-complex protein 1 zeta subunit n=3 Tax=Pleosporo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107457contigM-pyrifera_M_contig107457:103..618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score211.5
Seed ortholog evalue3.2e-52
Seed eggNOG ortholog81824.XP_001750963.1
Preferred nameCCT6A
KEGG koko:K09498
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001669,GO:0002199,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0006457,GO:0006458,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007276,GO:0007283,GO:0007338,GO:0007339,GO:0008037,GO:0008104,GO:0008150,GO:0008565,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0019219,GO:0019222,GO:0019904,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030141,GO:0031023,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031647,GO:0031982,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034622,GO:0035036,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045935,GO:0048232,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0050821,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051131,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051298,GO:0051704,GO:0060255,GO:0060341,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070202,GO:0070203,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071987,GO:0080090,GO:0097223,GO:0097708,GO:0098534,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0101031,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.unfolded protein binding
EggNOG OGs38EFP@33154,COG0459@1,KOG0359@2759
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110,ko04147
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.2075813-CDS-M-pyrifera_M_contig107457:102..6181622815584.2075813-CDS-M-pyrifera_M_contig107457:102..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107457 103..618 +
1692277474.8798609-CDS-M-pyrifera_M_contig107457:102..6181692277474.8798609-CDS-M-pyrifera_M_contig107457:102..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107457 103..618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107457.1588.1prot_M-pyrifera_M_contig107457.1588.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107457 103..618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107457.1588.1

>prot_M-pyrifera_M_contig107457.1588.1 ID=prot_M-pyrifera_M_contig107457.1588.1|Name=mRNA_M-pyrifera_M_contig107457.1588.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
NEQQIQHPTASLIARAATAQDDITGDGTSSSVLIIGEALKQCERFLSENV
HPRVLADGFEVARTVALKTLDAVKLDKEVDKELLLSVARTSLRTKVPQKI
ADQLTEIVTEAVLCIQQPDLPLDLFMVEVMTMQHRAATDTRLVRGLVLDH
GPRHPRMPTKLTNCHILTCNIS
back to top

mRNA from alignment at M-pyrifera_M_contig107457:103..618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107457.1588.1 ID=mRNA_M-pyrifera_M_contig107457.1588.1|Name=mRNA_M-pyrifera_M_contig107457.1588.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig107457:103..618+ (Macrocystis pyrifera P11B4 male)
AACGAACAGCAAATCCAGCACCCCACCGCTTCCCTGATCGCGAGGGCCGC GACGGCACAGGACGACATCACCGGAGACGGCACATCCTCGAGCGTGCTCA TCATTGGCGAGGCGCTGAAGCAGTGCGAGCGCTTCCTCTCGGAGAACGTG CACCCGCGCGTGCTGGCCGACGGCTTCGAGGTCGCCCGCACGGTGGCGCT CAAGACGCTCGACGCAGTGAAGCTCGACAAGGAGGTGGACAAGGAGCTCC TCCTCAGCGTGGCCAGGACCTCTCTGCGCACGAAGGTTCCGCAGAAGATC GCCGACCAGCTCACCGAGATCGTCACCGAGGCAGTGCTGTGCATCCAGCA GCCCGACCTCCCCCTCGACCTCTTCATGGTCGAGGTGATGACAATGCAGC ATCGCGCCGCCACCGACACGCGCCTCGTAAGGGGCCTCGTGCTCGACCAC GGCCCGCGCCACCCCCGTATGCCCACCAAGCTTACCAACTGCCACATTCT CACCTGCAACATCTCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig107457:103..618+

>mRNA_M-pyrifera_M_contig107457.1588.1 ID=mRNA_M-pyrifera_M_contig107457.1588.1|Name=mRNA_M-pyrifera_M_contig107457.1588.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig107457:103..618+ (Macrocystis pyrifera P11B4 male)
AACGAACAGCAAATCCAGCACCCCACCGCTTCCCTGATCGCGAGGGCCGC
GACGGCACAGGACGACATCACCGGAGACGGCACATCCTCGAGCGTGCTCA
TCATTGGCGAGGCGCTGAAGCAGTGCGAGCGCTTCCTCTCGGAGAACGTG
CACCCGCGCGTGCTGGCCGACGGCTTCGAGGTCGCCCGCACGGTGGCGCT
CAAGACGCTCGACGCAGTGAAGCTCGACAAGGAGGTGGACAAGGAGCTCC
TCCTCAGCGTGGCCAGGACCTCTCTGCGCACGAAGGTTCCGCAGAAGATC
GCCGACCAGCTCACCGAGATCGTCACCGAGGCAGTGCTGTGCATCCAGCA
GCCCGACCTCCCCCTCGACCTCTTCATGGTCGAGGTGATGACAATGCAGC
ATCGCGCCGCCACCGACACGCGCCTCGTAAGGGGCCTCGTGCTCGACCAC
GGCCCGCGCCACCCCCGTATGCCCACCAAGCTTACCAACTGCCACATTCT
CACCTGCAACATCTCCAACGAACAGCAAATCCAGCACCCCACCGCTTCCC
TGATCGCGAGGGCCGCGACGGCACAGGACGACATCACCGGAGACGGCACA
TCCTCGAGCGTGCTCATCATTGGCGAGGCGCTGAAGCAGTGCGAGCGCTT
CCTCTCGGAGAACGTGCACCCGCGCGTGCTGGCCGACGGCTTCGAGGTCG
CCCGCACGGTGGCGCTCAAGACGCTCGACGCAGTGAAGCTCGACAAGGAG
GTGGACAAGGAGCTCCTCCTCAGCGTGGCCAGGACCTCTCTGCGCACGAA
GGTTCCGCAGAAGATCGCCGACCAGCTCACCGAGATCGTCACCGAGGCAG
TGCTGTGCATCCAGCAGCCCGACCTCCCCCTCGACCTCTTCATGGTCGAG
GTGATGACAATGCAGCATCGCGCCGCCACCGACACGCGCCTCGTAAGGGG
CCTCGTGCTCGACCACGGCCCGCGCCACCCCCGTATGCCCACCAAGCTTA
CCAACTGCCACATTCTCACCTGCAACATCTCC
back to top