mRNA_M-pyrifera_M_contig107453.1587.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107453.1587.1
Unique NamemRNA_M-pyrifera_M_contig107453.1587.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Match: A0A7S4HT08_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HT08_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 2.710e-21
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    7 WAAAAGALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAMAVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQAKMSFFEY 324
            W  + GA+LVELEVRY G+S PT +F++A   FQ+ EQ+LAD        +    + +  +SPW ++GEY  AN A W+REKNPN F GAV+VA P+ A   F  Y
Sbjct:   85 WGQSMGAVLVELEVRYSGQSDPTTNFTSATFQFQTPEQNLADLTMFHTNFVK--AFPAYVDSPWFLIGEYYNANFAIWAREKNPNVFRGAVAVAGPVLAVSEFPNY 188          
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Match: A0A0D2UA11_CAPO3 (Thymus-specific serine protease n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UA11_CAPO3)

HSP 1 Score: 74.3 bits (181), Expect = 3.250e-13
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   25 ALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAMAVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQAKMSFFEYQEVL 336
            AL+V LE R+ GES+PT D+S A L F + +Q LAD A  A  +       +   S W+  G       + W+R K PN F G++S + P+ A+++F +Y EV+
Sbjct:  120 ALMVTLEHRFYGESVPTADYSVANLRFLTSQQALADAANFAANITLQF---NAPTSSWVTFGGSYPGCLSAWARLKYPNLFQGSISTSGPVHAELNFVQYLEVV 220          
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Match: A0A6A4VGL2_AMPAM (Putative serine protease K12H4.7 n=4 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VGL2_AMPAM)

HSP 1 Score: 73.2 bits (178), Expect = 8.270e-13
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    4 EWAAAAGALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAMAVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQAKMSFFEYQEVL 336
            ++A   GAL  +LE R+ G+SLPT+D S   L + S EQ LAD A  + A+     +     + W+  G     + + W R K P+    AVS +APL AK +FFEY EV+
Sbjct:   96 DYAQQYGALCFQLEHRFYGDSLPTEDMSVENLRYLSSEQALADLAAFSAAMTEQ--YALPEGTKWVSFGGSYPGSLSAWYRLKYPHMVHAAVSTSAPLLAKTNFFEYLEVV 204          
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Match: A0A4P9Y7D7_9FUNG (Peptidase S28 (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y7D7_9FUNG)

HSP 1 Score: 70.9 bits (172), Expect = 1.180e-12
Identity = 40/105 (38.10%), Postives = 54/105 (51.43%), Query Frame = 1
Query:   10 AAAAGALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAMAVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQAKMSFFEY 324
            A A G LLV LE RY G+SLP  +F+   + + + +Q L D A    +           +S WIVVG     N A W R   P+    A S +AP++AK+ FFEY
Sbjct:   55 AQATGGLLVALEHRYFGQSLPFSEFTTKNMQYLTTDQALKDLARFIQSFKGTSKAQINPSSRWIVVGGSYAGNLAAWMRLTYPDLVFAAYSSSAPVKAKLDFFEY 159          
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Match: A0A3R6XJZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XJZ7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.990e-12
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   25 ALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAMAVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQAKMSFFEYQEVL 336
            AL+V LE RY G+S P  DFS A L F   +Q LAD       ++   T +  ++S W+  G       A W +   P+ F+GAV+ +AP++AK+ FFEY +V+
Sbjct:  121 ALVVSLEHRYYGKSQPRPDFSNANLKFLRSDQALADIVTFQDHIIR--TRNLTADSKWVAFGGSYPGMLAAWVKLLYPSRFVGAVASSAPIEAKIDFFEYSDVV 222          
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Match: A0A061IFA4_CRIGR (Thymus-specific serine protease n=2 Tax=Cricetulus griseus TaxID=10029 RepID=A0A061IFA4_CRIGR)

HSP 1 Score: 70.1 bits (170), Expect = 5.140e-12
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   10 AAAAGALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAMAVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQAKMSFFEYQEVL 336
            A A GAL++ LE R+ G S+P+     A L + S    LAD A    A+  +L  +  S+SPWI  G     + ATW+R K P+    AV+ +APL A + F+ Y EV+
Sbjct:  135 APAWGALVISLEHRFYGLSMPSGGLDMAQLRYLSSRHALADVASARQALSRLL--NVSSSSPWICFGGSYAGSLATWTRLKFPHLVFAAVASSAPLSAVLDFYAYNEVV 241          
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Match: UPI00094F0A46 (putative serine protease K12H4.7 n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094F0A46)

HSP 1 Score: 70.9 bits (172), Expect = 5.430e-12
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1
Query:   22 GALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAMAVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQAKMSFFEYQEVL 336
            GALLV LE RY G S P  D S   L + S+ Q LAD A    A+       S+S++ WI  G       A W R++ P+   GA++ +APL+A + F EY +V+
Sbjct:  113 GALLVNLEHRYYGNSQPFTDLSVDSLQYLSVSQALADTANFIEAINEKYNI-SKSDAKWIAFGGSYAGTLAAWLRQEYPDLVAGAMASSAPLEALLDFHEYLQVV 216          
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Match: N6TVA3_DENPD (Uncharacterized protein (Fragment) n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6TVA3_DENPD)

HSP 1 Score: 70.9 bits (172), Expect = 5.740e-12
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1
Query:   22 GALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAMAVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQAKMSFFEYQEVL 336
            GALLV LE RY G S P  D S   L + S+ Q LAD A    A+       S+S++ WI  G       A W R++ P+   GA++ +APL+A + F EY +V+
Sbjct:  580 GALLVNLEHRYYGNSQPFTDLSVDSLQYLSVSQALADTANFIEAINEKYNI-SKSDAKWIAFGGSYAGTLAAWLRQEYPDLVAGAMASSAPLEALLDFHEYLQVV 683          
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Match: W4GA51_9STRA (Uncharacterized protein n=14 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GA51_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.000e-11
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   25 ALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAMAVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQAKMSFFEYQEVL 336
            AL+V LE RY G+S P  DFS A L F   +Q LAD       ++   T +  ++S W+  G       A W +   P+ F+GAV+ +AP++AK+ FFEY +V+
Sbjct:  121 ALVVSLEHRYYGKSQPRPDFSNANLKFLRSDQALADIVTFQDHIIR--TRNLTADSKWVAFGGSYPGMLAAWVKLLYPSRFVGAVASSAPIEAKIDFFEYSDVV 222          
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Match: A0A7S0W8A9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W8A9_9CRYP)

HSP 1 Score: 70.1 bits (170), Expect = 1.010e-11
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1
Query:   22 GALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAMAVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQAKMSFFEYQEVL 336
            GAL+V LE RY G+S+PT D S   L F S EQ L D A     +    T+   + + W+  G       A WSR K P+ F  AVS +APL+A  + ++Y +V+
Sbjct:  135 GALVVALEHRYYGKSVPTPDLSTDSLRFLSAEQALEDIASFHAHISD--TYGLPARARWVAFGGSYPGMLAAWSRSKYPHLFHAAVSSSAPLRAVSNMYQYNDVV 237          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107453.1587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HT08_9EUKA2.710e-2147.17Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A0D2UA11_CAPO33.250e-1337.50Thymus-specific serine protease n=1 Tax=Capsaspora... [more]
A0A6A4VGL2_AMPAM8.270e-1338.74Putative serine protease K12H4.7 n=4 Tax=Amphibala... [more]
A0A4P9Y7D7_9FUNG1.180e-1238.10Peptidase S28 (Fragment) n=1 Tax=Piptocephalis cyl... [more]
A0A3R6XJZ7_9STRA3.990e-1238.46Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A061IFA4_CRIGR5.140e-1238.53Thymus-specific serine protease n=2 Tax=Cricetulus... [more]
UPI00094F0A465.430e-1239.05putative serine protease K12H4.7 n=1 Tax=Dendrocto... [more]
N6TVA3_DENPD5.740e-1239.05Uncharacterized protein (Fragment) n=2 Tax=Dendroc... [more]
W4GA51_9STRA1.000e-1138.46Uncharacterized protein n=14 Tax=Aphanomyces astac... [more]
A0A7S0W8A9_9CRYP1.010e-1139.05Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107453contigM-pyrifera_M_contig107453:191..583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score79.3
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog9778.XP_004376454.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.serine protease K12H4.7-like
EggNOG OGs34UV2@311790,38H6D@33154,3BBCG@33208,3CS02@33213,3J4YX@40674,481ZB@7711,49754@7742,KOG2182@1,KOG2182@2759
COG Functional cat.O
Best tax levelAfrotheria
Best eggNOG OGNA|NA|NA
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.1591449-CDS-M-pyrifera_M_contig107453:190..3221622815584.1591449-CDS-M-pyrifera_M_contig107453:190..322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107453 191..322 +
1692277474.8565073-CDS-M-pyrifera_M_contig107453:190..3221692277474.8565073-CDS-M-pyrifera_M_contig107453:190..322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107453 191..322 +
1622815584.17172-CDS-M-pyrifera_M_contig107453:379..5831622815584.17172-CDS-M-pyrifera_M_contig107453:379..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107453 380..583 +
1692277474.8701732-CDS-M-pyrifera_M_contig107453:379..5831692277474.8701732-CDS-M-pyrifera_M_contig107453:379..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107453 380..583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107453.1587.1prot_M-pyrifera_M_contig107453.1587.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107453 191..583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107453.1587.1

>prot_M-pyrifera_M_contig107453.1587.1 ID=prot_M-pyrifera_M_contig107453.1587.1|Name=mRNA_M-pyrifera_M_contig107453.1587.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
GEWAAAAGALLVELEVRYCGESLPTDDFSAAGLAFQSIEQHLADQAGLAM
AVLAMLTWHSQSNSPWIVVGEYQEANTATWSREKNPNAFLGAVSVAAPLQ
AKMSFFEYQEVL
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mRNA from alignment at M-pyrifera_M_contig107453:191..583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107453.1587.1 ID=mRNA_M-pyrifera_M_contig107453.1587.1|Name=mRNA_M-pyrifera_M_contig107453.1587.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig107453:191..583+ (Macrocystis pyrifera P11B4 male)
GGCGAGTGGGCAGCAGCTGCAGGAGCGCTCCTGGTGGAGCTCGAGGTGCG CTACTGCGGCGAGAGCCTCCCCACGGACGACTTCTCCGCCGCTGGCCTGG CATTCCAATCGATCGAGCAGCACCTGGCAGACGTGCTTGAGTTCCGCGAG AAGTTCTCCTTTGTCCTCTATCCAGAGCTGGTATGTCAGCAGGCAGGCCT GGCCATGGCTGTGCTCGCAATGCTGACGTGGCACTCACAGTCGAATTCGC CTTGGATTGTGGTGGGAGAGTACCAGGAGGCGAACACTGCCACGTGGAGC AGGGAGAAGAACCCTAACGCCTTCCTCGGTGCAGTCTCGGTTGCTGCGCC GCTGCAGGCGAAGATGAGCTTCTTCGAGTACCAGGAGGTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107453:191..583+

>mRNA_M-pyrifera_M_contig107453.1587.1 ID=mRNA_M-pyrifera_M_contig107453.1587.1|Name=mRNA_M-pyrifera_M_contig107453.1587.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig107453:191..583+ (Macrocystis pyrifera P11B4 male)
GGCGAGTGGGCAGCAGCTGCAGGAGCGCTCCTGGTGGAGCTCGAGGTGCG
CTACTGCGGCGAGAGCCTCCCCACGGACGACTTCTCCGCCGCTGGCCTGG
CATTCCAATCGATCGAGCAGCACCTGGCAGACGGCGAGTGGGCAGCAGCT
GCAGGAGCGCTCCTGGTGGAGCTCGAGGTGCGCTACTGCGGCGAGAGCCT
CCCCACGGACGACTTCTCCGCCGCTGGCCTGGCATTCCAATCGATCGAGC
AGCACCTGGCAGACCAGGCAGGCCTGGCCATGGCTGTGCTCGCAATGCTG
ACGTGGCACTCACAGTCGAATTCGCCTTGGATTGTGGTGGGAGAGTACCA
GGAGGCGAACACTGCCACGTGGAGCAGGGAGAAGAACCCTAACGCCTTCC
TCGGTGCAGTCTCGGTTGCTGCGCCGCTGCAGGCGAAGATGAGCTTCTTC
GAGTACCAGGAGGTGCTCCAGGCAGGCCTGGCCATGGCTGTGCTCGCAAT
GCTGACGTGGCACTCACAGTCGAATTCGCCTTGGATTGTGGTGGGAGAGT
ACCAGGAGGCGAACACTGCCACGTGGAGCAGGGAGAAGAACCCTAACGCC
TTCCTCGGTGCAGTCTCGGTTGCTGCGCCGCTGCAGGCGAAGATGAGCTT
CTTCGAGTACCAGGAGGTGCTC
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