mRNA_M-pyrifera_M_contig107378.1581.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107378.1581.1
Unique NamemRNA_M-pyrifera_M_contig107378.1581.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107378.1581.1 vs. uniprot
Match: A0A517PNH8_9PLAN (Uncharacterized protein n=3 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PNH8_9PLAN)

HSP 1 Score: 229 bits (584), Expect = 8.430e-76
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 MGHSVIEFQGQQLRLHDSKVRCVYEGLLYERDRLGERDRLGAAELPRNVNRLFDRWESERNGLFQAPGCIDLELDDCLQDPEDVVACLKLVDQLEVHIRGLSLPVPGVF 327
            MGHSVIEFQGQQLRLHDSKVRCVYEGLLYERDRLGERDRLGAAELPRNVNRLFDRWESERNGLFQAPGCIDLELDDCLQDPEDVVACLKLVDQLEVHIRGLSLPVPGVF
Sbjct:    1 MGHSVIEFQGQQLRLHDSKVRCVYEGLLYERDRLGERDRLGAAELPRNVNRLFDRWESERNGLFQAPGCIDLELDDCLQDPEDVVACLKLVDQLEVHIRGLSLPVPGVF 109
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BLAST of mRNA_M-pyrifera_M_contig107378.1581.1 vs. uniprot
Match: A0A518A6B5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A6B5_9PLAN)

HSP 1 Score: 179 bits (455), Expect = 3.180e-56
Identity = 89/109 (81.65%), Postives = 93/109 (85.32%), Query Frame = 1 
Query:    1 MGHSVIEFQGQQLRLHDSKVRCVYEGLLYERDRLGERDRLGAAELPRNVNRLFDRWESERNGLFQAPGCIDLELDDCLQDPEDVVACLKLVDQLEVHIRGLSLPVPGVF 327
            MGHS+IE+QGQQL L DSKVRC+YEGLLYERDRLG      AAELP NVNRLFD WESE+NGLFQAPGCIDLELDD LQ PEDV ACL LVDQLEVHIRGLS PV GVF
Sbjct:    1 MGHSIIEYQGQQLLLRDSKVRCIYEGLLYERDRLG------AAELPFNVNRLFDLWESEQNGLFQAPGCIDLELDDWLQGPEDVAACLILVDQLEVHIRGLSSPVSGVF 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107378.1581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A517PNH8_9PLAN8.430e-76100.00Uncharacterized protein n=3 Tax=Gimesia chilikensi... [more]
A0A518A6B5_9PLAN3.180e-5681.65Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107378contigM-pyrifera_M_contig107378:270..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.7711897-CDS-M-pyrifera_M_contig107378:269..5961622815583.7711897-CDS-M-pyrifera_M_contig107378:269..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107378 270..596 -
1692277474.612861-CDS-M-pyrifera_M_contig107378:269..5961692277474.612861-CDS-M-pyrifera_M_contig107378:269..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107378 270..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107378.1581.1prot_M-pyrifera_M_contig107378.1581.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107378 270..596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107378.1581.1

>prot_M-pyrifera_M_contig107378.1581.1 ID=prot_M-pyrifera_M_contig107378.1581.1|Name=mRNA_M-pyrifera_M_contig107378.1581.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MGHSVIEFQGQQLRLHDSKVRCVYEGLLYERDRLGERDRLGAAELPRNVN
RLFDRWESERNGLFQAPGCIDLELDDCLQDPEDVVACLKLVDQLEVHIRG
LSLPVPGVF
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mRNA from alignment at M-pyrifera_M_contig107378:270..596-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107378.1581.1 ID=mRNA_M-pyrifera_M_contig107378.1581.1|Name=mRNA_M-pyrifera_M_contig107378.1581.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig107378:270..596- (Macrocystis pyrifera P11B4 male)
ATGGGTCACTCAGTTATCGAATTTCAGGGACAACAGCTGCGGTTGCACGA
CTCGAAAGTCAGGTGCGTTTATGAGGGGCTGCTCTATGAACGCGACCGAC
TGGGGGAACGCGACCGACTGGGTGCGGCGGAACTGCCCCGCAATGTGAAC
CGGTTATTTGACCGCTGGGAGTCAGAGCGGAATGGTCTGTTTCAGGCTCC
GGGCTGTATCGACCTGGAACTGGATGACTGCCTGCAGGATCCCGAGGATG
TCGTGGCCTGTCTGAAACTTGTAGATCAGCTGGAAGTCCACATTCGGGGG
CTCAGCCTTCCGGTGCCTGGCGTTTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107378:270..596-

>mRNA_M-pyrifera_M_contig107378.1581.1 ID=mRNA_M-pyrifera_M_contig107378.1581.1|Name=mRNA_M-pyrifera_M_contig107378.1581.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig107378:270..596- (Macrocystis pyrifera P11B4 male)
ATGGGTCACTCAGTTATCGAATTTCAGGGACAACAGCTGCGGTTGCACGA
CTCGAAAGTCAGGTGCGTTTATGAGGGGCTGCTCTATGAACGCGACCGAC
TGGGGGAACGCGACCGACTGGGTGCGGCGGAACTGCCCCGCAATGTGAAC
CGGTTATTTGACCGCTGGGAGTCAGAGCGGAATGGTCTGTTTCAGGCTCC
GGGCTGTATCGACCTGGAACTGGATGACTGCCTGCAGGATCCCGAGGATG
TCGTGGCCTGTCTGAAACTTGTAGATCAGCTGGAAGTCCACATTCGGGGG
CTCAGCCTTCCGGTGCCTGGCGTTTTTATGGGTCACTCAGTTATCGAATT
TCAGGGACAACAGCTGCGGTTGCACGACTCGAAAGTCAGGTGCGTTTATG
AGGGGCTGCTCTATGAACGCGACCGACTGGGGGAACGCGACCGACTGGGT
GCGGCGGAACTGCCCCGCAATGTGAACCGGTTATTTGACCGCTGGGAGTC
AGAGCGGAATGGTCTGTTTCAGGCTCCGGGCTGTATCGACCTGGAACTGG
ATGACTGCCTGCAGGATCCCGAGGATGTCGTGGCCTGTCTGAAACTTGTA
GATCAGCTGGAAGTCCACATTCGGGGGCTCAGCCTTCCGGTGCCTGGCGT
TTTT
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