mRNA_M-pyrifera_M_contig107372.1577.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107372.1577.1
Unique NamemRNA_M-pyrifera_M_contig107372.1577.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Match: A0A353ZI82_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353ZI82_9PLAN)

HSP 1 Score: 174 bits (441), Expect = 1.550e-47
Identity = 94/212 (44.34%), Postives = 118/212 (55.66%), Query Frame = 1
Query:    1 HANEIDKWEYNSTSTEGHPLKLFTDRGKDFNTTKKFIFESTPAVQGTSNIERLRLQGTNCKYNVPCPHCGEFQEL-----KMEH-IKWDKPDTGKTDLKLARLTARYICQHCKEEIGDQHRKPMMNRGVWCPEGCTIKSKEAMDAHARELYTGDVDVKPVDWNTCEWIDGEPVGNLESASYQLSSLYALSL-SWGAIAVEFLKSKKSKKDLQ 615
            HANE+DKWE   TSTEG PL LF DR  DF  ++K I E TP+V+  S +ER RL G+NC+  VPC  C  +Q L     K  H +KWD    G+TDL  A  TA Y+C+HC+  +  + R  M+ RGVW PEGCT+      D  A EL   D   +   W+   WI G P    E ASYQL S YA ++  WG  A  FL  K   + L+
Sbjct:  168 HANEVDKWEQQGTSTEGDPLDLFLDRFNDFLPSRKVIIEGTPSVKHRSRVERWRLLGSNCRLQVPCRLCNRYQILILGDEKTPHGVKWDAGPDGRTDLDTAAATAHYVCEHCRGRLNSEDRPWMLRRGVWVPEGCTVD-----DPAALELSLADPRPEWRGWDRARWIRGTPAKTGEVASYQLPSWYAQAIPGWGDFARRFLTVKSRPQSLR 374          
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Match: A0A518B2T0_9BACT (Phage terminase large subunit (GpA) n=1 Tax=Planctomycetes bacterium Pan216 TaxID=2527975 RepID=A0A518B2T0_9BACT)

HSP 1 Score: 108 bits (270), Expect = 7.000e-24
Identity = 64/193 (33.16%), Postives = 96/193 (49.74%), Query Frame = 1
Query:   10 EIDKWEYNSTSTEGHPLKLFTDRGKDF-NTTKKFIFESTPAVQGTSNIERLRLQGTNCKYNVPCPHCGEFQELKMEHIKWDKPDTGKTDLKLARLTARYICQHCKEEIGDQHRKPMMNRGVWCPEGCTIKSKEAMDAHARELYTGDVDVKPVDWNTCEWIDGEPVGNLESASYQLSSLYALSLSWGAIAVEFL 585
            E++ W   +   EG P+K+  DR K    + KK + E  P ++G   I R   Q    +++VPCPHCGE+QELK  ++ WDK   G +    A  T RY C+HC ++I +  +  M+ RGVW P G  ++    + AH  +  +     + V         GE       A + LSSLY+  + WG  A E+L
Sbjct:  139 EVNLW--GTLIKEGDPVKMARDRLKAIPGSRKKILIEGKPTIKGQCAITRAYEQSDMRRFHVPCPHCGEYQELKQGNLVWDKRPDGTSCPDFASKTTRYRCEHCGQDISEDRKVLMLRRGVWVPAGQRVEPLP-VTAHGGDGASLAPTYRLV---------GEKSNPSRFAGFHLSSLYSNVIPWGEYAREWL 319          
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Match: A0A518LBI0_9BACT (Phage terminase large subunit (GpA) n=1 Tax=Planctomycetes bacterium TBK1r TaxID=2527963 RepID=A0A518LBI0_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 8.070e-20
Identity = 64/203 (31.53%), Postives = 91/203 (44.83%), Query Frame = 1
Query:    1 HANEIDKWEYNSTSTEGHPLKLFTDRGKDFNTTKKFIFESTPAVQGTSNIERLRLQGTNCKYNVPCPHCGEFQELKMEHIK--------WDKPDTGKTDLKLARLTARYICQHCKEEIGDQHRKPMMNRGVWCPEGCTIKSKEAMDAHARELYTGDVDVKPVDWNTCEWIDGEPVGNLESASYQLSSLYALSLSWGAIAVEFL 585
            H  E+ K+  +  S E   ++L   RG +    +K   ESTP + GT  I R    GTN  Y VPCPHCG+F  L++            W+K   G+T    A  TA Y+C HC    GD+HR   + +GVW   G      E +D       TG V              G P  +    S+ L+ LYA + ++G +A E++
Sbjct:  166 HLLEVSKFSRDD-SDEADTVELTLQRGSEI-VDRKVFMESTPTLVGTCAISRYVEAGTNRHYFVPCPHCGDFSPLEVNQTNDRRAGGLWWEKDKDGRTTPARAYRTATYVCPHCTNNWGDEHRLAQIRKGVWVAPG------EVIDR------TGTV-------------TGTPHNDGPDESFNLNRLYAPTFTFGDVAKEYV 341          
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Match: A0A7C5KPE2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5KPE2_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 5.910e-18
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    4 ANEIDKWEYNSTSTEGHPLKLFTDRGKDFNTTKKFIFESTPAVQGTSNIERLRLQGTNCKYNVPCPHCGEFQELKMEHIKWDKPDTGKTDLKLARLTARYICQHCKEEIGDQHRKPMMNRGVWCPEGCTIKSKEAMDA 417
            A+E+DK+   S   +G PL L  DR   F   K  IF+S+        I +     T   Y +PCPHCG++Q L+M+ +KW K +     ++   L A Y+C+HC+++I D+ R   +  GVW PE   +K+ + + A
Sbjct:  193 ADELDKYPAFS-GRDGSPLDLARDRTITFRNRK--IFKSSTPTTKDGAIWKEWEASTREHYWIPCPHCGKYQTLRMDRLKWPKDERNPAKIRTKNL-AFYLCEHCEKDISDRERLAALKHGVWVPEDAVLKNGKVVGA 326          
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Match: A0A7U6Y822_9PROT (Bacteriophage tail assembly protein n=1 Tax=Rhodospirillaceae bacterium LM-1 TaxID=2682548 RepID=A0A7U6Y822_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 2.050e-17
Identity = 53/160 (33.12%), Postives = 77/160 (48.12%), Query Frame = 1
Query:    7 NEIDKWEYNSTSTEGHPLKLFTDRGKDFNTTKKFIFESTPAVQGTSNIERLRLQGTNCKYNVPCPHCGEFQELKMEHIKWDKPDTGKTDLKLARLTARYICQHCKEEIGDQHRKPMMNRGVWCPEGCTIKSKEAMDAHARELYTGDVDVKPVDWNTCEWI 486
            +E+D +   S   EG P+ L   R   F   +K    STP ++G S IER        ++ +PCPHCGE+Q LK E ++W+K   G+ +      TARY+C+ C E I + H+  M+  G W     T      +  H   LY+      PV W + E I
Sbjct:  196 DEVDAYPL-SADEEGDPVTLAEARSLTFAHRRKIFLVSTPTIKGISRIEREFEASDQRRFFLPCPHCGEYQWLKFERLRWEK---GQPE------TARYVCEACDEGIAEHHKTAMLESGDWRATA-TSADPLTIGFHLSALYS------PVGWLSWERI 338          
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Match: K2KUB9_9PROT (Terminase large subunit n=3 Tax=Thalassospira TaxID=168934 RepID=K2KUB9_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 5.070e-17
Identity = 52/149 (34.90%), Postives = 73/149 (48.99%), Query Frame = 1
Query:   46 EGHPLKLFTDRGKDFNTTKKFIFESTPAVQGTSNIERLRLQGTNCKYNVPCPHCGEFQELKMEHIKWDKPDTGKTDLKLARLTARYICQHCKEEIGDQHRKPMMNRGVWCPEGCTIK-SKEAMDAHARELYTGDVDVKPVDWNTCEWID 489
            EG P+ L   R + F   K FI  STP V+G S IER        +Y VPCPHCG FQ L+ E ++WDK   G+ +      TA Y+C  C+  I + H+  M+  G W     + + S++    H   LY+      P+ W +  W D
Sbjct:  187 EGDPVALAEARTRTFARRKVFIV-STPTVKGVSRIEREFEASDQRRYFVPCPHCGHFQWLEFERLRWDK---GRPE------TAHYLCGECEGHIQEHHKTRMLEAGTWRATAASEQGSEKTAGFHISSLYS------PIGWRS--WAD 317          
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Match: A0A7C8GR72_9BACI (Phage terminase large subunit family protein n=1 Tax=Gracilibacillus oryzae TaxID=1672701 RepID=A0A7C8GR72_9BACI)

HSP 1 Score: 87.4 bits (215), Expect = 1.700e-16
Identity = 48/123 (39.02%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    7 NEIDKWEYNSTSTEGHPLKLFTDRGKDFNTTKKFIFESTPAVQGTSNIERLRLQGTNCK-YNVPCPHCGEFQELKMEHIKWDKPDTGKTDLKLARLTARYICQHCKEEIGDQHRKPMMNRGVW 372
            +E+DK+   ++  E  P+KL  +R K F T KK    STP ++ + +I + + +    K Y VPCPHCG++ ELK + IKW K D G +    A   A Y+CQ C   I DQH+  M+  G W
Sbjct:  172 DEVDKYP-GASKKEADPIKLARERTKTFTTNKKIFMTSTPTLK-SGHIWQAKEKADIVKHYKVPCPHCGDYIELKFQQIKWPKKD-GMSYADRAEF-ANYVCQECGCIITDQHKPQMLRYGKW 290          
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Match: A0A1Q8Q263_9BACI (Terminase n=1 Tax=Domibacillus antri TaxID=1714264 RepID=A0A1Q8Q263_9BACI)

HSP 1 Score: 86.7 bits (213), Expect = 3.140e-16
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    7 NEIDKWEYNSTSTEGHPLKLFTDRGKDFNTTKKFIFESTPAVQGTSNIERLRLQGTNCK-YNVPCPHCGEFQELKMEHIKWDKPDTGKTDLKLARLTARYICQHCKEEIGDQHRKPMMNRGVW 372
            +E+DK+   ++  E  P+KL  +R K F   KK    STP ++ T++I + +      K Y VPCPHCGE+ ELKM++I+W K D G +++  A   A Y+CQ C   I DQH+  M+  G W
Sbjct:  172 DEVDKYP-GASKKEADPIKLARERTKTF-PNKKIFLTSTPTLK-TNHIWKAKENADVVKHYKVPCPHCGEYIELKMQNIRWPKKD-GMSNVDRAEF-ANYVCQECGCIITDQHKPQMLRFGRW 289          
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Match: A0A0X8GRC1_9BURK (Terminase n=2 Tax=Betaproteobacteria TaxID=28216 RepID=A0A0X8GRC1_9BURK)

HSP 1 Score: 86.3 bits (212), Expect = 4.340e-16
Identity = 45/147 (30.61%), Postives = 69/147 (46.94%), Query Frame = 1
Query:    1 HANEIDKWEYNSTSTEGHPLKLFTDRGKDFNTTKKFIFESTPAVQGTSNIERLRLQGTNCKYNVPCPHCGEFQELKMEHIKWDKPDTGKTDLKLARLTARYICQHCKEEIGDQHRKPMMNRGVWCPEGCTIKSKEAMDAHARELYTG 441
            + +EID+WE N  + EG P+ L   R   F    K  + S+P ++G+S I  L L+GT  ++ V CPHCGEFQ L  E ++W+   +           A Y+C      I + H+  M+  G W          E+   +A  +  G
Sbjct:  173 YGDEIDRWERN-VNEEGDPVDLAEARTSTFGRNAKIYYSSSPTLEGSSRINDLYLEGTQQRFYVGCPHCGEFQTLVFEQLRWNSEHSE----------AHYVCTASGCLIDEHHKTAMLPAGEWRAGAAGDGETESFQINALNMPLG 308          
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Match: A0A7C2H138_9BACT (Phage terminase large subunit family protein (Fragment) n=2 Tax=Bryobacterales TaxID=332160 RepID=A0A7C2H138_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 2.940e-15
Identity = 53/158 (33.54%), Postives = 72/158 (45.57%), Query Frame = 1
Query:    7 NEIDKWEYNSTSTEGHPLKLFTDRGKDFNTTKKFIFESTPAVQGTSNIERLRLQGTNCKYNVPCPHCGEFQELKMEHIKWDKPDTGKTDLKLARLTARYICQHCKEEIGDQHRKPMMNRGVWCPEGCTIKSKEAMDAHARELYTGDVDVKPVDWNTCE 480
            +EID +       EG P+ L   R + F+  K F+  STP + G S IE    +    +Y VPCPHCGEFQ LK E ++W K +  K         A Y C  C++ I +  +  M+ RG W PE            H   LY+      PV W + E
Sbjct:  174 DEIDAYP-GDVDGEGDPIHLAFARTRTFSRRKVFLC-STPLITGLSRIEAAFAESDQRRYWVPCPHCGEFQVLKFERLRWPKGEPQK---------AVYHCIACEQAIFNHQKNTMLARGEWRPEA--TGDGRTRGYHLSSLYS------PVGWYSWE 312          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107372.1577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353ZI82_9PLAN1.550e-4744.34Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A518B2T0_9BACT7.000e-2433.16Phage terminase large subunit (GpA) n=1 Tax=Planct... [more]
A0A518LBI0_9BACT8.070e-2031.53Phage terminase large subunit (GpA) n=1 Tax=Planct... [more]
A0A7C5KPE2_9BACT5.910e-1834.06Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7U6Y822_9PROT2.050e-1733.13Bacteriophage tail assembly protein n=1 Tax=Rhodos... [more]
K2KUB9_9PROT5.070e-1734.90Terminase large subunit n=3 Tax=Thalassospira TaxI... [more]
A0A7C8GR72_9BACI1.700e-1639.02Phage terminase large subunit family protein n=1 T... [more]
A0A1Q8Q263_9BACI3.140e-1639.84Terminase n=1 Tax=Domibacillus antri TaxID=1714264... [more]
A0A0X8GRC1_9BURK4.340e-1630.61Terminase n=2 Tax=Betaproteobacteria TaxID=28216 R... [more]
A0A7C2H138_9BACT2.940e-1533.54Phage terminase large subunit family protein (Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107372contigM-pyrifera_M_contig107372:6..620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score102.4
Seed ortholog evalue2.5e-19
Seed eggNOG ortholog1128111.HMPREF0870_01771
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phage terminase large subunit (GpA)
EggNOG OGs1TQBY@1239,4H6KC@909932,COG5525@1,COG5525@2
COG Functional cat.S
Best tax levelNegativicutes
Best eggNOG OGNA|NA|NA
Exons1
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.60294-CDS-M-pyrifera_M_contig107372:5..6201622815583.60294-CDS-M-pyrifera_M_contig107372:5..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107372 6..620 -
1692277474.5401359-CDS-M-pyrifera_M_contig107372:5..6201692277474.5401359-CDS-M-pyrifera_M_contig107372:5..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107372 6..620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107372.1577.1prot_M-pyrifera_M_contig107372.1577.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107372 6..620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107372.1577.1

>prot_M-pyrifera_M_contig107372.1577.1 ID=prot_M-pyrifera_M_contig107372.1577.1|Name=mRNA_M-pyrifera_M_contig107372.1577.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
HANEIDKWEYNSTSTEGHPLKLFTDRGKDFNTTKKFIFESTPAVQGTSNI
ERLRLQGTNCKYNVPCPHCGEFQELKMEHIKWDKPDTGKTDLKLARLTAR
YICQHCKEEIGDQHRKPMMNRGVWCPEGCTIKSKEAMDAHARELYTGDVD
VKPVDWNTCEWIDGEPVGNLESASYQLSSLYALSLSWGAIAVEFLKSKKS
KKDLQ
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mRNA from alignment at M-pyrifera_M_contig107372:6..620-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107372.1577.1 ID=mRNA_M-pyrifera_M_contig107372.1577.1|Name=mRNA_M-pyrifera_M_contig107372.1577.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig107372:6..620- (Macrocystis pyrifera P11B4 male)
CATGCGAACGAGATTGACAAGTGGGAATACAACTCGACCAGCACCGAAGG CCACCCGCTCAAGCTGTTTACAGACCGTGGAAAGGACTTCAATACCACAA AGAAGTTTATCTTTGAGTCCACACCAGCGGTTCAGGGTACATCGAACATC GAGCGGCTACGGCTACAGGGCACCAACTGCAAGTACAACGTACCCTGCCC TCACTGCGGCGAGTTTCAAGAACTGAAGATGGAACACATCAAGTGGGATA AACCGGACACAGGGAAGACTGATTTGAAGCTCGCACGCCTCACTGCCCGC TACATCTGCCAGCATTGCAAGGAAGAGATCGGAGACCAGCACCGCAAGCC AATGATGAACCGAGGCGTCTGGTGTCCTGAAGGCTGCACGATCAAGTCTA AGGAAGCGATGGACGCCCACGCGCGGGAACTCTATACCGGCGATGTGGAC GTGAAGCCGGTGGACTGGAATACGTGCGAGTGGATCGACGGCGAGCCGGT AGGAAATCTGGAATCAGCCAGTTATCAGCTCAGTTCCCTCTATGCCCTGT CTCTGAGCTGGGGGGCAATCGCGGTTGAGTTCCTGAAGTCCAAGAAGAGC AAGAAAGACTTACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107372:6..620-

>mRNA_M-pyrifera_M_contig107372.1577.1 ID=mRNA_M-pyrifera_M_contig107372.1577.1|Name=mRNA_M-pyrifera_M_contig107372.1577.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig107372:6..620- (Macrocystis pyrifera P11B4 male)
CATGCGAACGAGATTGACAAGTGGGAATACAACTCGACCAGCACCGAAGG
CCACCCGCTCAAGCTGTTTACAGACCGTGGAAAGGACTTCAATACCACAA
AGAAGTTTATCTTTGAGTCCACACCAGCGGTTCAGGGTACATCGAACATC
GAGCGGCTACGGCTACAGGGCACCAACTGCAAGTACAACGTACCCTGCCC
TCACTGCGGCGAGTTTCAAGAACTGAAGATGGAACACATCAAGTGGGATA
AACCGGACACAGGGAAGACTGATTTGAAGCTCGCACGCCTCACTGCCCGC
TACATCTGCCAGCATTGCAAGGAAGAGATCGGAGACCAGCACCGCAAGCC
AATGATGAACCGAGGCGTCTGGTGTCCTGAAGGCTGCACGATCAAGTCTA
AGGAAGCGATGGACGCCCACGCGCGGGAACTCTATACCGGCGATGTGGAC
GTGAAGCCGGTGGACTGGAATACGTGCGAGTGGATCGACGGCGAGCCGGT
AGGAAATCTGGAATCAGCCAGTTATCAGCTCAGTTCCCTCTATGCCCTGT
CTCTGAGCTGGGGGGCAATCGCGGTTGAGTTCCTGAAGTCCAAGAAGAGC
AAGAAAGACTTACAGCATGCGAACGAGATTGACAAGTGGGAATACAACTC
GACCAGCACCGAAGGCCACCCGCTCAAGCTGTTTACAGACCGTGGAAAGG
ACTTCAATACCACAAAGAAGTTTATCTTTGAGTCCACACCAGCGGTTCAG
GGTACATCGAACATCGAGCGGCTACGGCTACAGGGCACCAACTGCAAGTA
CAACGTACCCTGCCCTCACTGCGGCGAGTTTCAAGAACTGAAGATGGAAC
ACATCAAGTGGGATAAACCGGACACAGGGAAGACTGATTTGAAGCTCGCA
CGCCTCACTGCCCGCTACATCTGCCAGCATTGCAAGGAAGAGATCGGAGA
CCAGCACCGCAAGCCAATGATGAACCGAGGCGTCTGGTGTCCTGAAGGCT
GCACGATCAAGTCTAAGGAAGCGATGGACGCCCACGCGCGGGAACTCTAT
ACCGGCGATGTGGACGTGAAGCCGGTGGACTGGAATACGTGCGAGTGGAT
CGACGGCGAGCCGGTAGGAAATCTGGAATCAGCCAGTTATCAGCTCAGTT
CCCTCTATGCCCTGTCTCTGAGCTGGGGGGCAATCGCGGTTGAGTTCCTG
AAGTCCAAGAAGAGCAAGAAAGACTTACAG
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