mRNA_M-pyrifera_M_contig107347.1570.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107347.1570.1
Unique NamemRNA_M-pyrifera_M_contig107347.1570.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Match: A0A0M3JGG2_ANISI (Histidine ammonia-lyase (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3JGG2_ANISI)

HSP 1 Score: 114 bits (284), Expect = 6.630e-31
Identity = 51/86 (59.30%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    7 SSQADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHGPSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTIE 264
            + QADV+ AL+++ L+G+ RA+   IH+ R H GQ   A+RLR+LLH  ++ S+IAESH+HCGRVQD+YT+RC PQVHG+VHDTIE
Sbjct:    3 AKQADVIAALSLDVLKGTTRAYDADIHEIRPHKGQMATAQRLRSLLHSEANPSEIAESHRHCGRVQDAYTLRCVPQVHGIVHDTIE 88
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BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Match: A0A6V7WQV2_9BILA (Hypothetical protein n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7WQV2_9BILA)

HSP 1 Score: 116 bits (291), Expect = 4.030e-30
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    7 SSQADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHGPSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTIE 264
            + QADV+ ALT++ L+G+ RAF   +HK R H GQ  VA RLRALLH   + S+IAESH+HCG+VQD+YT+RC PQVHGV HDTIE
Sbjct:  149 AKQADVIAALTLDVLKGTTRAFDAKVHKVRPHKGQNLVAGRLRALLHSDLNRSEIAESHRHCGKVQDAYTLRCVPQVHGVTHDTIE 234
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BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Match: UPI001885CFCE (histidine ammonia-lyase-like n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI001885CFCE)

HSP 1 Score: 117 bits (292), Expect = 3.960e-29
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   13 QADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHGPSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTIE 264
            QADVV ALT+EALRGSVR FHPAIH  + H GQ++VA RL ALL  P   S+I+ESH+ C RVQD+YT+RC PQVHG+V+DTI+
Sbjct:  145 QADVVAALTLEALRGSVRPFHPAIHAVKPHPGQKEVAERLCALLDSPGFPSQISESHRSCNRVQDAYTLRCIPQVHGIVNDTIK 228
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BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Match: UPI0003F08E3B (histidine ammonia-lyase n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08E3B)

HSP 1 Score: 116 bits (291), Expect = 5.740e-29
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    7 SSQADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHGPSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTIE 264
            + QADVV ALT+E L+G+ RAF   IH +R H GQR VA R RALLH   H S+IAESH+ C RVQDSYT+RC PQVHG+VHDTI+
Sbjct:  119 AKQADVVAALTLEVLKGTTRAFDSDIHASRPHKGQRDVAARFRALLHSEYHPSEIAESHRFCDRVQDSYTLRCCPQVHGIVHDTID 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Match: A0A6V7V560_9BILA (Histidine ammonia-lyase n=3 Tax=Meloidogyne TaxID=189290 RepID=A0A6V7V560_9BILA)

HSP 1 Score: 116 bits (291), Expect = 1.470e-28
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    7 SSQADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHGPSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTIE 264
            + QADV+ ALT++ L+G+ RAF   +HK R H GQ  VA RLRALLH   + S+IAESH+HCG+VQD+YT+RC PQVHGV HDTIE
Sbjct:  277 AKQADVIAALTLDVLKGTTRAFDAKVHKVRPHKGQNLVAGRLRALLHSDLNRSEIAESHRHCGKVQDAYTLRCVPQVHGVTHDTIE 362
[Close]
BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Match: A0A2G8KHK6_STIJA (Histidine ammonia-lyase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KHK6_STIJA)

HSP 1 Score: 115 bits (288), Expect = 1.700e-28
Identity = 52/86 (60.47%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    7 SSQADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHGPSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTIE 264
            + QADV+ ALT+E L+G+  AF  AIH  R H GQR+VA RLR+LLH  +H S+I++SH+ CG+VQD+YT+RC PQVHG+VHDTI+
Sbjct:  198 AKQADVIAALTIEVLKGTTTAFESAIHNIRPHRGQREVAWRLRSLLHSETHPSEISQSHRFCGKVQDAYTLRCCPQVHGIVHDTID 283
[Close]
BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Match: UPI001E670D2E (histidine ammonia-lyase-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E670D2E)

HSP 1 Score: 116 bits (290), Expect = 2.410e-28
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   13 QADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHGPSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTIE 264
            QADVV ALT+E L+G+ RAF   +HK R H GQ +VARR+RALLH  + TS+IAESH+ C RVQD+YT+RC PQVHGVVHDTI+
Sbjct:  329 QADVVAALTLEVLKGTSRAFDSDVHKLRHHKGQIEVARRIRALLHSDTFTSEIAESHRFCDRVQDAYTLRCTPQVHGVVHDTIK 412
[Close]
BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Match: UPI001E1CD63E (histidine ammonia-lyase-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CD63E)

HSP 1 Score: 115 bits (289), Expect = 3.310e-28
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    7 SSQADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHGPSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTI 261
            + QADVV ALT+E L+G+ RAF   +HK R H GQ +VARR+RALLH  ++ S+IAESH+ C RVQD+YT+RC PQVHG+VHDTI
Sbjct:  327 AKQADVVAALTLEVLKGTSRAFDSDVHKLRHHKGQNEVARRIRALLHNDTYRSEIAESHRFCDRVQDAYTLRCTPQVHGIVHDTI 411
[Close]
BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Match: A0A7S3F7X2_9VIRI (Probable imidazolonepropionase n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F7X2_9VIRI)

HSP 1 Score: 115 bits (289), Expect = 3.540e-28
Identity = 55/83 (66.27%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:   13 QADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHGPSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTI 261
            QADVVTALT+E LRG+ RAF   +H AR+H GQ++VARRLR LLH     S++A+SH  CGRVQD+YT+RC+PQVHGVVHDT+
Sbjct:  240 QADVVTALTVEVLRGTSRAFDARVHAARRHEGQQEVARRLRLLLHPMGEISELAQSHAGCGRVQDAYTLRCSPQVHGVVHDTV 322
[Close]
BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Match: A0A2G8KDA9_STIJA (Histidine ammonia-lyase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KDA9_STIJA)

HSP 1 Score: 115 bits (288), Expect = 3.910e-28
Identity = 52/86 (60.47%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    7 SSQADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHGPSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTIE 264
            + QADV+ ALT+E L+G+  AF  AIH  R H GQR+VA RLR+LLH  +H S+I++SH+ CG+VQD+YT+RC PQVHG+VHDTI+
Sbjct:  262 AKQADVIAALTIEVLKGTTTAFESAIHNIRPHRGQREVAWRLRSLLHSETHPSEISQSHRFCGKVQDAYTLRCCPQVHGIVHDTID 347
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107347.1570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0M3JGG2_ANISI6.630e-3159.30Histidine ammonia-lyase (inferred by orthology to ... [more]
A0A6V7WQV2_9BILA4.030e-3062.79Hypothetical protein n=1 Tax=Meloidogyne enterolob... [more]
UPI001885CFCE3.960e-2966.67histidine ammonia-lyase-like n=1 Tax=Syngnathus ac... [more]
UPI0003F08E3B5.740e-2965.12histidine ammonia-lyase n=1 Tax=Saccoglossus kowal... [more]
A0A6V7V560_9BILA1.470e-2862.79Histidine ammonia-lyase n=3 Tax=Meloidogyne TaxID=... [more]
A0A2G8KHK6_STIJA1.700e-2860.47Histidine ammonia-lyase n=1 Tax=Stichopus japonicu... [more]
UPI001E670D2E2.410e-2866.67histidine ammonia-lyase-like n=1 Tax=Procambarus c... [more]
UPI001E1CD63E3.310e-2863.53histidine ammonia-lyase-like n=1 Tax=Portunus trit... [more]
A0A7S3F7X2_9VIRI3.540e-2866.27Probable imidazolonepropionase n=1 Tax=Prasinoderm... [more]
A0A2G8KDA9_STIJA3.910e-2860.47Histidine ammonia-lyase n=1 Tax=Stichopus japonicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107347contigM-pyrifera_M_contig107347:28..356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score116.3
Seed ortholog evalue7.2e-24
Seed eggNOG ortholog10224.XP_006825988.1
Preferred nameHAL
KEGG rclassRC00361
KEGG koko:K01745
KEGG ReactionR01168
KEGG Pathwayko00340,ko01100,map00340,map01100
KEGG ModuleM00045
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004397,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006548,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0016054,GO:0016829,GO:0016840,GO:0016841,GO:0019439,GO:0019752,GO:0034641,GO:0042221,GO:0042592,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046700,GO:0048878,GO:0050801,GO:0050896,GO:0052803,GO:0052805,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0065007,GO:0065008,GO:0071704,GO:0072507,GO:0097501,GO:0098771,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1990359
EggNOG free text desc.histidine ammonia-lyase activity
EggNOG OGs39FQ6@33154,3BD2K@33208,3CSYT@33213,COG2986@1,KOG0222@2759
EC4.3.1.3
COG Functional cat.Q
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.3149803-CDS-M-pyrifera_M_contig107347:27..2011622815583.3149803-CDS-M-pyrifera_M_contig107347:27..201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107347 28..201 -
1692277474.3706234-CDS-M-pyrifera_M_contig107347:27..2011692277474.3706234-CDS-M-pyrifera_M_contig107347:27..201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107347 28..201 -
1622815583.3300436-CDS-M-pyrifera_M_contig107347:266..3561622815583.3300436-CDS-M-pyrifera_M_contig107347:266..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107347 267..356 -
1692277474.3805203-CDS-M-pyrifera_M_contig107347:266..3561692277474.3805203-CDS-M-pyrifera_M_contig107347:266..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107347 267..356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107347.1570.1prot_M-pyrifera_M_contig107347.1570.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107347 28..356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107347.1570.1

>prot_M-pyrifera_M_contig107347.1570.1 ID=prot_M-pyrifera_M_contig107347.1570.1|Name=mRNA_M-pyrifera_M_contig107347.1570.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
LTSSQADVVTALTMEALRGSVRAFHPAIHKARKHTGQRQVARRLRALLHG
PSHTSKIAESHKHCGRVQDSYTMRCAPQVHGVVHDTIE
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mRNA from alignment at M-pyrifera_M_contig107347:28..356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107347.1570.1 ID=mRNA_M-pyrifera_M_contig107347.1570.1|Name=mRNA_M-pyrifera_M_contig107347.1570.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=329bp|location=Sequence derived from alignment at M-pyrifera_M_contig107347:28..356- (Macrocystis pyrifera P11B4 male)
CTGACTTCCAGCCAAGCTGACGTCGTTACCGCTCTCACCATGGAAGCGCT
CCGTGGCAGCGTGCGAGCCTTCCATCCTGCCATTCACAAGGTGTGCACAC
TTCCCTCCTTGCGGTGCCGCCCCGCTTCTCTCACTCGCCTCACTCACCCG
CACAGGCTCGCAAGCACACCGGGCAGCGTCAGGTCGCGCGCAGGCTGCGT
GCCCTCCTCCATGGCCCTTCTCACACCTCCAAGATCGCCGAGTCGCACAA
GCACTGCGGCCGCGTGCAAGACAGCTACACCATGCGCTGTGCACCTCAGG
TGCACGGGGTGGTGCATGACACCATTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107347:28..356-

>mRNA_M-pyrifera_M_contig107347.1570.1 ID=mRNA_M-pyrifera_M_contig107347.1570.1|Name=mRNA_M-pyrifera_M_contig107347.1570.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig107347:28..356- (Macrocystis pyrifera P11B4 male)
CTGACTTCCAGCCAAGCTGACGTCGTTACCGCTCTCACCATGGAAGCGCT
CCGTGGCAGCGTGCGAGCCTTCCATCCTGCCATTCACAAGCTGACTTCCA
GCCAAGCTGACGTCGTTACCGCTCTCACCATGGAAGCGCTCCGTGGCAGC
GTGCGAGCCTTCCATCCTGCCATTCACAAGGCTCGCAAGCACACCGGGCA
GCGTCAGGTCGCGCGCAGGCTGCGTGCCCTCCTCCATGGCCCTTCTCACA
CCTCCAAGATCGCCGAGTCGCACAAGCACTGCGGCCGCGTGCAAGACAGC
TACACCATGCGCTGTGCACCTCAGGTGCACGGGGTGGTGCATGACACCAT
TGAGGCTCGCAAGCACACCGGGCAGCGTCAGGTCGCGCGCAGGCTGCGTG
CCCTCCTCCATGGCCCTTCTCACACCTCCAAGATCGCCGAGTCGCACAAG
CACTGCGGCCGCGTGCAAGACAGCTACACCATGCGCTGTGCACCTCAGGT
GCACGGGGTGGTGCATGACACCATTGAG
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