mRNA_M-pyrifera_M_contig107333.1565.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107333.1565.1
Unique NamemRNA_M-pyrifera_M_contig107333.1565.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107333.1565.1 vs. uniprot
Match: A0A0L0D930_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D930_THETB)

HSP 1 Score: 112 bits (280), Expect = 9.440e-28
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 AIIHRVHNRDG-RPLTEAEHAAYQEQSLRGAEGFDVCKWVEMTLTRIGDTKGRTLLDVGAINSLRYEAGVSPLHLASSRAIDLHVLDKSSDV 273
            AIIH +HNR+  +PL+EAE AAYQEQSLRGA  FD C WVE  L + G ++G+ LLDVGAIN+LRY  G  PL L  +RAIDLHVL + S V
Sbjct:  103 AIIHYIHNRESDQPLSEAEFAAYQEQSLRGASHFDACMWVEAVLAKRGGSQGKALLDVGAINALRYVPGKPPLRLGRARAIDLHVLGEDSAV 194
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107333.1565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0L0D930_THETB9.440e-2861.96Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107333contigM-pyrifera_M_contig107333:2..274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.1093037-CDS-M-pyrifera_M_contig107333:1..2741622815583.1093037-CDS-M-pyrifera_M_contig107333:1..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107333 2..274 -
1692277474.3042264-CDS-M-pyrifera_M_contig107333:1..2741692277474.3042264-CDS-M-pyrifera_M_contig107333:1..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107333 2..274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107333.1565.1prot_M-pyrifera_M_contig107333.1565.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107333 2..274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107333.1565.1

>prot_M-pyrifera_M_contig107333.1565.1 ID=prot_M-pyrifera_M_contig107333.1565.1|Name=mRNA_M-pyrifera_M_contig107333.1565.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
AIIHRVHNRDGRPLTEAEHAAYQEQSLRGAEGFDVCKWVEMTLTRIGDTK
GRTLLDVGAINSLRYEAGVSPLHLASSRAIDLHVLDKSSDV
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mRNA from alignment at M-pyrifera_M_contig107333:2..274-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107333.1565.1 ID=mRNA_M-pyrifera_M_contig107333.1565.1|Name=mRNA_M-pyrifera_M_contig107333.1565.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig107333:2..274- (Macrocystis pyrifera P11B4 male)
GCCATCATCCATCGGGTACATAACCGTGACGGCAGACCTCTCACAGAGGC
AGAGCATGCGGCCTACCAGGAGCAGTCCCTTCGGGGAGCCGAGGGCTTTG
ATGTGTGTAAATGGGTGGAGATGACTCTGACTCGCATTGGAGATACAAAG
GGCCGCACCCTCCTTGACGTGGGCGCCATCAACAGTCTTCGCTACGAGGC
TGGAGTCAGTCCTCTCCACCTGGCCTCCTCGCGGGCCATCGACCTGCATG
TTCTGGACAAGAGCTCAGATGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107333:2..274-

>mRNA_M-pyrifera_M_contig107333.1565.1 ID=mRNA_M-pyrifera_M_contig107333.1565.1|Name=mRNA_M-pyrifera_M_contig107333.1565.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig107333:2..274- (Macrocystis pyrifera P11B4 male)
GCCATCATCCATCGGGTACATAACCGTGACGGCAGACCTCTCACAGAGGC
AGAGCATGCGGCCTACCAGGAGCAGTCCCTTCGGGGAGCCGAGGGCTTTG
ATGTGTGTAAATGGGTGGAGATGACTCTGACTCGCATTGGAGATACAAAG
GGCCGCACCCTCCTTGACGTGGGCGCCATCAACAGTCTTCGCTACGAGGC
TGGAGTCAGTCCTCTCCACCTGGCCTCCTCGCGGGCCATCGACCTGCATG
TTCTGGACAAGAGCTCAGATGTGGCCATCATCCATCGGGTACATAACCGT
GACGGCAGACCTCTCACAGAGGCAGAGCATGCGGCCTACCAGGAGCAGTC
CCTTCGGGGAGCCGAGGGCTTTGATGTGTGTAAATGGGTGGAGATGACTC
TGACTCGCATTGGAGATACAAAGGGCCGCACCCTCCTTGACGTGGGCGCC
ATCAACAGTCTTCGCTACGAGGCTGGAGTCAGTCCTCTCCACCTGGCCTC
CTCGCGGGCCATCGACCTGCATGTTCTGGACAAGAGCTCAGATGTG
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