mRNA_M-pyrifera_M_contig107317.1561.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A7Y2DMW5_9ACTN (Thymidylate synthase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DMW5_9ACTN) HSP 1 Score: 177 bits (448), Expect = 1.430e-50 Identity = 95/122 (77.87%), Postives = 104/122 (85.25%), Query Frame = 1
Query: 1 ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSL 366
EL+DE G+ D FDAAM RSAAL++++EP FG AS AV+LAYRVRF +LNARSAMHMLELRSTPQGHPAYR VAQDMH AIAE AGH AIA MMTFVNH SE DLERLEAERRAEA+R SL
Sbjct: 413 ELIDEIGLTDEFDAAMHRSAALFQAIEP-FGASASYAVALAYRVRFMMDLNARSAMHMLELRSTPQGHPAYRKVAQDMHTAIAETAGHRAIAGMMTFVNHSSEADLERLEAERRAEAKRASL 533
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A7Y2N9B2_9ACTN (Thymidylate synthase (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N9B2_9ACTN) HSP 1 Score: 169 bits (427), Expect = 1.670e-47 Identity = 92/122 (75.41%), Postives = 100/122 (81.97%), Query Frame = 1
Query: 1 ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSL 366
+L+DE G+ D FDAAM RSAAL+ LEP FG +S AVSLAYRVRF +LNARSAMHMLELRSTPQGHPAYRTVAQ MH AIAE AGH AIA MM FVNH SE DLERLEAERRAE +R +L
Sbjct: 413 DLIDEIGLTDEFDAAMHRSAALFSVLEP-FGAASSYAVSLAYRVRFMMDLNARSAMHMLELRSTPQGHPAYRTVAQQMHTAIAETAGHKAIAGMMAFVNHSSEADLERLEAERRAEQKRAAL 533
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A6I3D4F7_9ACTN (Thymidylate synthase n=12 Tax=root TaxID=1 RepID=A0A6I3D4F7_9ACTN) HSP 1 Score: 159 bits (401), Expect = 1.030e-43 Identity = 80/117 (68.38%), Postives = 99/117 (84.62%), Query Frame = 1
Query: 7 VDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARR 357
VD+AGV FD AM+RSA+LYE+LE F ++S AVSLAY+VRF+ ++NAR AMH++ELR+TPQGHPAYR V Q+MHR IAEKAGHHAIA MM FV+H +E +LERL+AERRAE+RR
Sbjct: 416 VDDAGVAPIFDEAMQRSASLYEALEERFPAESSYAVSLAYKVRFSMDMNAREAMHLIELRTTPQGHPAYRIVGQEMHRLIAEKAGHHAIASMMRFVDHSAEPELERLQAERRAESRR 532
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A7C7WDK5_9ACTN (Thymidylate synthase n=4 Tax=root TaxID=1 RepID=A0A7C7WDK5_9ACTN) HSP 1 Score: 158 bits (400), Expect = 1.500e-43 Identity = 83/121 (68.60%), Postives = 96/121 (79.34%), Query Frame = 1
Query: 7 VDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSLG 369
VDEAGVG RFDAAMERS LYE+L + QA AVSLAYRVR+ ++NAR AMH+LELRSTPQGHP+YR VAQ MH I++ AGHHAIAEMM+FV+H E DLERLE ERRAE +R+ G
Sbjct: 416 VDEAGVGGRFDAAMERSRDLYEALRGPYPDQAPYAVSLAYRVRYLMHMNAREAMHVLELRSTPQGHPSYRKVAQQMHHLISDVAGHHAIAEMMSFVDHSGEADLERLEGERRAERKRSVRG 536
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A381Q4Z5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381Q4Z5_9ZZZZ) HSP 1 Score: 158 bits (399), Expect = 2.100e-43 Identity = 80/122 (65.57%), Postives = 101/122 (82.79%), Query Frame = 1
Query: 7 VDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSLGS 372
VDEAGVG RFDAAMERS L+++L F QA +V+LAYRVR+ ++NAR AMH+LELRSTPQGHP+YR +AQ MHR IA+ AGHHA+AEMM++V+H +E +LERLEAERRAE +R +LG+
Sbjct: 416 VDEAGVGGRFDAAMERSRDLHDALRGPFPEQAPYSVALAYRVRYLMHMNAREAMHVLELRSTPQGHPSYRQIAQQMHRLIADVAGHHAVAEMMSYVDHTTEPELERLEAERRAEQKRLALGN 537
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A3D5K6Z4_9ACTN (Thymidylate synthase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K6Z4_9ACTN) HSP 1 Score: 158 bits (399), Expect = 2.160e-43 Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = 1
Query: 7 VDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSLGS 372
VDEAGVG RFDAAMERS L+++L F QA AVSLAYRVR+ ++NAR AMH+LELRSTPQGHP+YR VAQ MHR I + AGHHAIAEMM FV+H SE +LERL+AERRAE +R S S
Sbjct: 416 VDEAGVGGRFDAAMERSRDLHDALLEPFPEQAPYAVSLAYRVRYMMHMNAREAMHVLELRSTPQGHPSYREVAQQMHRLIGDVAGHHAIAEMMAFVDHSSEPELERLDAERRAEEKRASRDS 537
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A7X7D8S9_9ACTN (Thymidylate synthase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D8S9_9ACTN) HSP 1 Score: 157 bits (396), Expect = 5.700e-43 Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = 1
Query: 1 ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRT 360
E +D AG D FDAAMERSAAL++ LEP F QA AV+LA++VRF +NAR AMHMLELRS PQGHP+YR VAQDMHR +AE AGHHA+AEMM +V+H E LERL+AERRAEARR+
Sbjct: 414 ESIDLAGQRDEFDAAMERSAALHDLLEPRFPAQAPYAVALAFKVRFVMQMNAREAMHMLELRSGPQGHPSYREVAQDMHRQVAEVAGHHAVAEMMRYVDHSPEPSLERLDAERRAEARRS 533
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A6I2XF16_9ACTN (Thymidylate synthase n=2 Tax=root TaxID=1 RepID=A0A6I2XF16_9ACTN) HSP 1 Score: 156 bits (395), Expect = 7.430e-43 Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 1
Query: 1 ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSLGS 372
E VDEAGVG FD AM RSAAL++++ F QAS AV+LAYRVRF+ ++NAR AMH++ELR+TPQGHPAYR V Q+MHR I E+AGHHAIAEMM FV+ SE +LERL+AERRAE+RR LGS
Sbjct: 412 EAVDEAGVGPLFDDAMARSAALHDAMLADFPAQASYAVALAYRVRFSMDMNAREAMHLIELRTTPQGHPAYRIVGQEMHRLIGEQAGHHAIAEMMRFVDQSSEPELERLQAERRAESRR--LGS 533
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: UPI001F21D30E (FAD-dependent thymidylate synthase n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F21D30E) HSP 1 Score: 155 bits (392), Expect = 9.610e-43 Identity = 81/119 (68.07%), Postives = 96/119 (80.67%), Query Frame = 1
Query: 1 ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARR 357
+ VD AG D FDAAM RSAALY++L F +AS AVSLAY VRF +NAR AMH++ELRSTPQGHPAYR VAQ+MHR +AE+AGH AIAE M+FV+H +E +LERL+AERRAEARR
Sbjct: 362 QAVDLAGAADAFDAAMARSAALYDALAERFPAEASYAVSLAYNVRFTMQINAREAMHLIELRSTPQGHPAYRLVAQEMHRLLAEEAGHRAIAEAMSFVDHAAEPELERLDAERRAEARR 480
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A800LQZ1_9ACTN (Thymidylate synthase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800LQZ1_9ACTN) HSP 1 Score: 155 bits (393), Expect = 1.570e-42 Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = 1
Query: 7 VDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRT 360
+DEAG+ D+FDA MERSA L+++LE F QAS AVSLAYRVR+ ++NAR AMH+LELR++PQGHPAYR V Q MH I++ AGH AIAEMMTFV+H SE DLERLE+ERRAE +RT
Sbjct: 416 IDEAGLSDQFDAVMERSANLHQALEGPFPDQASYAVSLAYRVRYLMHMNAREAMHLLELRTSPQGHPAYREVGQQMHHLISDVAGHRAIAEMMTFVDHSSELDLERLESERRAEQKRT 533 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig107317.1561.1 >prot_M-pyrifera_M_contig107317.1561.1 ID=prot_M-pyrifera_M_contig107317.1561.1|Name=mRNA_M-pyrifera_M_contig107317.1561.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLback to top mRNA from alignment at M-pyrifera_M_contig107317:246..620- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig107317.1561.1 ID=mRNA_M-pyrifera_M_contig107317.1561.1|Name=mRNA_M-pyrifera_M_contig107317.1561.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig107317:246..620- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig107317:246..620- >mRNA_M-pyrifera_M_contig107317.1561.1 ID=mRNA_M-pyrifera_M_contig107317.1561.1|Name=mRNA_M-pyrifera_M_contig107317.1561.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig107317:246..620- (Macrocystis pyrifera P11B4 male)back to top |