mRNA_M-pyrifera_M_contig107317.1561.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107317.1561.1
Unique NamemRNA_M-pyrifera_M_contig107317.1561.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A7Y2DMW5_9ACTN (Thymidylate synthase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DMW5_9ACTN)

HSP 1 Score: 177 bits (448), Expect = 1.430e-50
Identity = 95/122 (77.87%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSL 366
            EL+DE G+ D FDAAM RSAAL++++EP FG  AS AV+LAYRVRF  +LNARSAMHMLELRSTPQGHPAYR VAQDMH AIAE AGH AIA MMTFVNH SE DLERLEAERRAEA+R SL
Sbjct:  413 ELIDEIGLTDEFDAAMHRSAALFQAIEP-FGASASYAVALAYRVRFMMDLNARSAMHMLELRSTPQGHPAYRKVAQDMHTAIAETAGHRAIAGMMTFVNHSSEADLERLEAERRAEAKRASL 533          
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A7Y2N9B2_9ACTN (Thymidylate synthase (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N9B2_9ACTN)

HSP 1 Score: 169 bits (427), Expect = 1.670e-47
Identity = 92/122 (75.41%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSL 366
            +L+DE G+ D FDAAM RSAAL+  LEP FG  +S AVSLAYRVRF  +LNARSAMHMLELRSTPQGHPAYRTVAQ MH AIAE AGH AIA MM FVNH SE DLERLEAERRAE +R +L
Sbjct:  413 DLIDEIGLTDEFDAAMHRSAALFSVLEP-FGAASSYAVSLAYRVRFMMDLNARSAMHMLELRSTPQGHPAYRTVAQQMHTAIAETAGHKAIAGMMAFVNHSSEADLERLEAERRAEQKRAAL 533          
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A6I3D4F7_9ACTN (Thymidylate synthase n=12 Tax=root TaxID=1 RepID=A0A6I3D4F7_9ACTN)

HSP 1 Score: 159 bits (401), Expect = 1.030e-43
Identity = 80/117 (68.38%), Postives = 99/117 (84.62%), Query Frame = 1
Query:    7 VDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARR 357
            VD+AGV   FD AM+RSA+LYE+LE  F  ++S AVSLAY+VRF+ ++NAR AMH++ELR+TPQGHPAYR V Q+MHR IAEKAGHHAIA MM FV+H +E +LERL+AERRAE+RR
Sbjct:  416 VDDAGVAPIFDEAMQRSASLYEALEERFPAESSYAVSLAYKVRFSMDMNAREAMHLIELRTTPQGHPAYRIVGQEMHRLIAEKAGHHAIASMMRFVDHSAEPELERLQAERRAESRR 532          
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A7C7WDK5_9ACTN (Thymidylate synthase n=4 Tax=root TaxID=1 RepID=A0A7C7WDK5_9ACTN)

HSP 1 Score: 158 bits (400), Expect = 1.500e-43
Identity = 83/121 (68.60%), Postives = 96/121 (79.34%), Query Frame = 1
Query:    7 VDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSLG 369
            VDEAGVG RFDAAMERS  LYE+L   +  QA  AVSLAYRVR+  ++NAR AMH+LELRSTPQGHP+YR VAQ MH  I++ AGHHAIAEMM+FV+H  E DLERLE ERRAE +R+  G
Sbjct:  416 VDEAGVGGRFDAAMERSRDLYEALRGPYPDQAPYAVSLAYRVRYLMHMNAREAMHVLELRSTPQGHPSYRKVAQQMHHLISDVAGHHAIAEMMSFVDHSGEADLERLEGERRAERKRSVRG 536          
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A381Q4Z5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381Q4Z5_9ZZZZ)

HSP 1 Score: 158 bits (399), Expect = 2.100e-43
Identity = 80/122 (65.57%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    7 VDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSLGS 372
            VDEAGVG RFDAAMERS  L+++L   F  QA  +V+LAYRVR+  ++NAR AMH+LELRSTPQGHP+YR +AQ MHR IA+ AGHHA+AEMM++V+H +E +LERLEAERRAE +R +LG+
Sbjct:  416 VDEAGVGGRFDAAMERSRDLHDALRGPFPEQAPYSVALAYRVRYLMHMNAREAMHVLELRSTPQGHPSYRQIAQQMHRLIADVAGHHAVAEMMSYVDHTTEPELERLEAERRAEQKRLALGN 537          
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A3D5K6Z4_9ACTN (Thymidylate synthase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K6Z4_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 2.160e-43
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    7 VDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSLGS 372
            VDEAGVG RFDAAMERS  L+++L   F  QA  AVSLAYRVR+  ++NAR AMH+LELRSTPQGHP+YR VAQ MHR I + AGHHAIAEMM FV+H SE +LERL+AERRAE +R S  S
Sbjct:  416 VDEAGVGGRFDAAMERSRDLHDALLEPFPEQAPYAVSLAYRVRYMMHMNAREAMHVLELRSTPQGHPSYREVAQQMHRLIGDVAGHHAIAEMMAFVDHSSEPELERLDAERRAEEKRASRDS 537          
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A7X7D8S9_9ACTN (Thymidylate synthase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D8S9_9ACTN)

HSP 1 Score: 157 bits (396), Expect = 5.700e-43
Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = 1
Query:    1 ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRT 360
            E +D AG  D FDAAMERSAAL++ LEP F  QA  AV+LA++VRF   +NAR AMHMLELRS PQGHP+YR VAQDMHR +AE AGHHA+AEMM +V+H  E  LERL+AERRAEARR+
Sbjct:  414 ESIDLAGQRDEFDAAMERSAALHDLLEPRFPAQAPYAVALAFKVRFVMQMNAREAMHMLELRSGPQGHPSYREVAQDMHRQVAEVAGHHAVAEMMRYVDHSPEPSLERLDAERRAEARRS 533          
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A6I2XF16_9ACTN (Thymidylate synthase n=2 Tax=root TaxID=1 RepID=A0A6I2XF16_9ACTN)

HSP 1 Score: 156 bits (395), Expect = 7.430e-43
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 1
Query:    1 ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRTSLGS 372
            E VDEAGVG  FD AM RSAAL++++   F  QAS AV+LAYRVRF+ ++NAR AMH++ELR+TPQGHPAYR V Q+MHR I E+AGHHAIAEMM FV+  SE +LERL+AERRAE+RR  LGS
Sbjct:  412 EAVDEAGVGPLFDDAMARSAALHDAMLADFPAQASYAVALAYRVRFSMDMNAREAMHLIELRTTPQGHPAYRIVGQEMHRLIGEQAGHHAIAEMMRFVDQSSEPELERLQAERRAESRR--LGS 533          
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: UPI001F21D30E (FAD-dependent thymidylate synthase n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F21D30E)

HSP 1 Score: 155 bits (392), Expect = 9.610e-43
Identity = 81/119 (68.07%), Postives = 96/119 (80.67%), Query Frame = 1
Query:    1 ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARR 357
            + VD AG  D FDAAM RSAALY++L   F  +AS AVSLAY VRF   +NAR AMH++ELRSTPQGHPAYR VAQ+MHR +AE+AGH AIAE M+FV+H +E +LERL+AERRAEARR
Sbjct:  362 QAVDLAGAADAFDAAMARSAALYDALAERFPAEASYAVSLAYNVRFTMQINAREAMHLIELRSTPQGHPAYRLVAQEMHRLLAEEAGHRAIAEAMSFVDHAAEPELERLDAERRAEARR 480          
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Match: A0A800LQZ1_9ACTN (Thymidylate synthase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800LQZ1_9ACTN)

HSP 1 Score: 155 bits (393), Expect = 1.570e-42
Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    7 VDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNLNARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNHDSETDLERLEAERRAEARRT 360
            +DEAG+ D+FDA MERSA L+++LE  F  QAS AVSLAYRVR+  ++NAR AMH+LELR++PQGHPAYR V Q MH  I++ AGH AIAEMMTFV+H SE DLERLE+ERRAE +RT
Sbjct:  416 IDEAGLSDQFDAVMERSANLHQALEGPFPDQASYAVSLAYRVRYLMHMNAREAMHLLELRTSPQGHPAYREVGQQMHHLISDVAGHRAIAEMMTFVDHSSELDLERLESERRAEQKRT 533          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107317.1561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2DMW5_9ACTN1.430e-5077.87Thymidylate synthase n=1 Tax=Acidimicrobiales bact... [more]
A0A7Y2N9B2_9ACTN1.670e-4775.41Thymidylate synthase (Fragment) n=1 Tax=Acidimicro... [more]
A0A6I3D4F7_9ACTN1.030e-4368.38Thymidylate synthase n=12 Tax=root TaxID=1 RepID=A... [more]
A0A7C7WDK5_9ACTN1.500e-4368.60Thymidylate synthase n=4 Tax=root TaxID=1 RepID=A0... [more]
A0A381Q4Z5_9ZZZZ2.100e-4365.57Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A3D5K6Z4_9ACTN2.160e-4368.85Thymidylate synthase n=1 Tax=Acidimicrobiaceae bac... [more]
A0A7X7D8S9_9ACTN5.700e-4368.33Thymidylate synthase n=1 Tax=Acidimicrobiales bact... [more]
A0A6I2XF16_9ACTN7.430e-4367.74Thymidylate synthase n=2 Tax=root TaxID=1 RepID=A0... [more]
UPI001F21D30E9.610e-4368.07FAD-dependent thymidylate synthase n=1 Tax=Rhabdot... [more]
A0A800LQZ1_9ACTN1.570e-4267.80Thymidylate synthase n=1 Tax=Acidimicrobiia bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107317contigM-pyrifera_M_contig107317:246..620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score142.1
Seed ortholog evalue1.7e-31
Seed eggNOG ortholog1229780.BN381_400026
Preferred namethyX
KEGG rclassRC00022,RC00332
KEGG koko:K03465
KEGG ReactionR06613
KEGG Pathwayko00240,ko00670,ko01100,map00240,map00670,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant
EggNOG OGs2HBYZ@201174,COG1351@1,COG1351@2
EC2.1.1.148
COG Functional cat.F
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.9430485-CDS-M-pyrifera_M_contig107317:245..6201622815582.9430485-CDS-M-pyrifera_M_contig107317:245..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107317 246..620 -
1692277474.243604-CDS-M-pyrifera_M_contig107317:245..6201692277474.243604-CDS-M-pyrifera_M_contig107317:245..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107317 246..620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107317.1561.1prot_M-pyrifera_M_contig107317.1561.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107317 246..620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107317.1561.1

>prot_M-pyrifera_M_contig107317.1561.1 ID=prot_M-pyrifera_M_contig107317.1561.1|Name=mRNA_M-pyrifera_M_contig107317.1561.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
ELVDEAGVGDRFDAAMERSAALYESLEPAFGPQASLAVSLAYRVRFNFNL
NARSAMHMLELRSTPQGHPAYRTVAQDMHRAIAEKAGHHAIAEMMTFVNH
DSETDLERLEAERRAEARRTSLGS*
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mRNA from alignment at M-pyrifera_M_contig107317:246..620-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107317.1561.1 ID=mRNA_M-pyrifera_M_contig107317.1561.1|Name=mRNA_M-pyrifera_M_contig107317.1561.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig107317:246..620- (Macrocystis pyrifera P11B4 male)
GAGCTGGTCGACGAGGCCGGCGTCGGTGACCGCTTCGACGCGGCGATGGA ACGATCGGCAGCGCTCTACGAGAGCCTCGAGCCGGCGTTCGGCCCACAGG CATCGCTTGCGGTGTCTCTCGCCTACCGGGTGCGGTTCAATTTCAACCTC AACGCTCGTTCGGCCATGCACATGCTCGAACTGCGATCCACCCCACAAGG GCATCCGGCCTATCGCACCGTGGCCCAAGACATGCACCGGGCCATCGCCG AAAAGGCCGGTCATCATGCGATCGCCGAGATGATGACCTTCGTGAACCAC GACTCCGAGACCGATCTGGAACGGCTCGAAGCAGAACGCCGGGCCGAAGC TCGTCGTACCTCGCTCGGCAGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107317:246..620-

>mRNA_M-pyrifera_M_contig107317.1561.1 ID=mRNA_M-pyrifera_M_contig107317.1561.1|Name=mRNA_M-pyrifera_M_contig107317.1561.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig107317:246..620- (Macrocystis pyrifera P11B4 male)
GAGCTGGTCGACGAGGCCGGCGTCGGTGACCGCTTCGACGCGGCGATGGA
ACGATCGGCAGCGCTCTACGAGAGCCTCGAGCCGGCGTTCGGCCCACAGG
CATCGCTTGCGGTGTCTCTCGCCTACCGGGTGCGGTTCAATTTCAACCTC
AACGCTCGTTCGGCCATGCACATGCTCGAACTGCGATCCACCCCACAAGG
GCATCCGGCCTATCGCACCGTGGCCCAAGACATGCACCGGGCCATCGCCG
AAAAGGCCGGTCATCATGCGATCGCCGAGATGATGACCTTCGTGAACCAC
GACTCCGAGACCGATCTGGAACGGCTCGAAGCAGAACGCCGGGCCGAAGC
TCGTCGTACCTCGCTCGGCAGCTGAGAGCTGGTCGACGAGGCCGGCGTCG
GTGACCGCTTCGACGCGGCGATGGAACGATCGGCAGCGCTCTACGAGAGC
CTCGAGCCGGCGTTCGGCCCACAGGCATCGCTTGCGGTGTCTCTCGCCTA
CCGGGTGCGGTTCAATTTCAACCTCAACGCTCGTTCGGCCATGCACATGC
TCGAACTGCGATCCACCCCACAAGGGCATCCGGCCTATCGCACCGTGGCC
CAAGACATGCACCGGGCCATCGCCGAAAAGGCCGGTCATCATGCGATCGC
CGAGATGATGACCTTCGTGAACCACGACTCCGAGACCGATCTGGAACGGC
TCGAAGCAGAACGCCGGGCCGAAGCTCGTCGTACCTCGCTCGGCAGCTGA
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