mRNA_M-pyrifera_M_contig107237.1556.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107237.1556.1
Unique NamemRNA_M-pyrifera_M_contig107237.1556.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Match: A0A8B8D2P8_CRAVI (LOW QUALITY PROTEIN: heat shock 70 kDa protein 12A-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D2P8_CRAVI)

HSP 1 Score: 61.6 bits (148), Expect = 1.310e-7
Identity = 55/185 (29.73%), Postives = 92/185 (49.73%), Query Frame = 1
Query:    1 FRDFLSELFGKENWDNVSPASKLALHREWVRDIKEVFRADTRAGGTFKLELSLALEDADLTDEPGLRALCERYNRDKGLAGSDLALRTRERGKTSLRLPQQFVRLRFFDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAEALKDLIGSDRVLVPESPARAVAVGAVLHGLAPTSV 555
            FR F+ +L G++  D+      +A H E  R+I+   R + +   + K+ ++L  E  +L +E   ++L E  N   G     + ++        LR+  +   LR F P VD I  H+ E ++    +G  L  I+L GGF++C ++ EA+K+     RV++P+    AV  GAVL G  P  V
Sbjct:  303 FRQFIQDLVGQKLMDDFKKRHPVA-HLELEREIERKKR-NLKGDESLKITINLPAELLELFEEKKGKSLAEFVN-SSGRYREIVDVKNER-----LRIDMKTT-LRMFKPAVDSILDHIEELVSNPVTQG--LRNIILVGGFSDCKIIQEAVKEKFKRFRVVIPQEAGLAVMKGAVLFGHNPLIV 476          
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Match: UPI00145801B8 (heat shock 70 kDa protein 12A-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI00145801B8)

HSP 1 Score: 57.0 bits (136), Expect = 4.900e-6
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  232 GLAGSDLALRTRERGKTSLRLPQQFVRLRFFDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAEALKDLIGSDRVLVPESPARAVAVGAVLHGLAPTSV 555
            G + SD+ L TR++    LRL Q+ V+   F+P +  ++ HV+  L+    EG     IL+ GG++EC LL +A++++ G  RV++P  P  AV  GAV++G  P  V
Sbjct:  377 GWSLSDIQL-TRDK----LRLSQEKVKA-LFEPSLRHVQDHVSGILSNPDVEG--CTAILMVGGYSECSLLQDAIRNIAGDIRVIIPNDPGLAVLKGAVINGHHPEMV 476          
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Match: A0A8B8BD05_CRAVI (heat shock 70 kDa protein 12A-like n=4 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BD05_CRAVI)

HSP 1 Score: 56.2 bits (134), Expect = 8.780e-6
Identity = 36/101 (35.64%), Postives = 53/101 (52.48%), Query Frame = 1
Query:  319 FFDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAEALKDLIGSDRVLVPESPARAVAVGAVLHGLAPTSVVVARRARRTVAYGRFDWFDADK 621
            FF   V  I  H+   L   +  G+++  I+L GGFAE P+L +A+K      RV++P   A +V  GAV+ G  P  ++  RR++ T     FD FD  K
Sbjct:  365 FFAETVTEITRHLKNLLQ--QKSGKDIATIILVGGFAESPMLTQAVKSTFSEMRVIIPHEAAWSVLRGAVIFGHDP-GLIKERRSKYTYGLAVFDKFDPKK 462          
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Match: A0A1C9U2Z8_MIZYE (Heat shock 70 kDa protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A1C9U2Z8_MIZYE)

HSP 1 Score: 56.2 bits (134), Expect = 8.860e-6
Identity = 58/213 (27.23%), Postives = 100/213 (46.95%), Query Frame = 1
Query:    1 FRDFLSELFGKENWDNVSPASKLALHREWVRDIKEVFRADTRAGGTFKLELSLALEDAD----LTDEPGLRALCERYNRDKGLAGSDLALRTRERGKTS-----LRLPQQFVRLRFFDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAEALKDLIGSDRVLVPESPARAVAVGAVLHGLAPTSVVVARRARRTVAYGRFDWFD 612
            F +FL E+FGK++ +N          R+++ D  E  R        F+ +        D    L   P  +   E +  +  ++ +D   +++  GK       L++    V+  FF+  + +I +HV + L      GR +D+IL+ GGF++C L+ +A++D      +L PE    AV  GAV+ G  P ++V +R AR T  Y  +  FD
Sbjct:  284 FLNFLMEIFGKKSVENFK--------RKYMTDYVEFRR-------NFETKKRTITPQTDGKVMLVLPPSFK---ETFEENSNISFNDALSKSKYSGKVQWVKDKLKIDADVVK-GFFEVPIQQIVSHVRKLLEKI---GR-IDMILMVGGFSDCGLVEQAIRDNFSDVSILNPEDSVLAVLKGAVIFGHKPMAIV-SRVARYTYGYEAWPTFD 472          
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Match: UPI00148A473C (heat shock 70 kDa protein 12A isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A473C)

HSP 1 Score: 56.2 bits (134), Expect = 8.940e-6
Identity = 58/198 (29.29%), Postives = 95/198 (47.98%), Query Frame = 1
Query:    1 FRDFLSELFGKENWDNVSPASKLALHREWVRDIKEVFRADTRAGGTFKLELSLALEDADLTDEPGLRALCERYNRDKGLAGSDLALRTRERGKTSLRLPQQFVRLRFFDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAEALKDLIGSDRVLVPESPARAVAVGAVLHGLAPTSVVVARRARRTVAYG 594
            F D + E+ G EN++ +     LA + +  +D+ EV + +     T K+  ++  + A +        + + YN +K            ++GK  L++P      ++F  I D I +HV E L   + + R +D IL+ GGF+E   L E +K    +  ++VP     AV  GAVL G  P  VVV+R A+  V YG
Sbjct:  302 FFDIIKEIVGDENFE-LFKKEDLAGYNDLRKDL-EVKKREINFEST-KISFTVPNQLAKM--------IPKNYNHEKVEC---------KKGKMELKVPGI---KKWFSEICDSIVSHVKELLEEQKKKQRNIDSILMVGGFSESFFLQETVKTAFPNKHIIVPNEAGLAVLKGAVLFGHNP-QVVVSRVAK--VTYG 473          
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Match: A0A8H7UYW5_9FUNG (Uncharacterized protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UYW5_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 3.220e-5
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  283 SLRLPQQFVRLRFFDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAEALKDLI-GSDRVLVPESPARAVAVGAVLHGLAPTSV 555
            +L++  Q ++ + FDPIVDRI   + ++L  A+  GR++  IL+ GGF++   L + +KD   G   V+VP     AV+ GAV + L P ++
Sbjct:  794 TLKMKNQDMKEKIFDPIVDRIIYLMDDQLNQAKKGGRDIKAILMVGGFSQSKYLQQRIKDQYKGVCHVIVPVEGDTAVSHGAVFYALYPRTI 885          
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Match: UPI001458804C (heat shock 70 kDa protein 12A-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458804C)

HSP 1 Score: 54.3 bits (129), Expect = 3.950e-5
Identity = 51/194 (26.29%), Postives = 92/194 (47.42%), Query Frame = 1
Query:    1 FRDFLSELFGKENWDNV---SPASKLALHREWVRDIKEVFRADTRAGGTFKLELSLALEDADLTDEPGLRALCERYNRDKGLAGSDLALRTR------ERGKTSLRLPQQFVRLRFFDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAEALKDLIGSDRVLVPESPARAVAVGAVLHGLAPTSV 555
            F DF+  + GK  + +       S + LHR +  + K+ F  D  AG      +   + ++            ++YN+D+ +A     + T+      +     +RL Q   R   F+  +  I  HV++ L     E ++   IL+ GG++ECPLL +A++++ G+ RV+VP     +V  GAV++G  P +V
Sbjct:  264 FEDFVETVVGKPAYKDFRVHKMPSLIELHRSF-EERKKTF-TDNSAGKKITFRIPFEIIES-----------FKKYNQDRNIAD---VIATKFNPADVDWTHDKIRLSQAKTR-NLFELSLHHITDHVSDILK--NPEVQDCKAILMVGGYSECPLLQDAIRNVAGNIRVIVPSDAGLSVLKGAVINGFFPDAV 438          
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Match: K1QEG3_CRAGI (Heat shock 70 kDa protein 12B n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QEG3_CRAGI)

HSP 1 Score: 54.3 bits (129), Expect = 3.960e-5
Identity = 60/206 (29.13%), Postives = 101/206 (49.03%), Query Frame = 1
Query:    1 FRDFLSELFGKENWDNVSPAS---KLALHREWVRDIKEVFRADTRAGGTFKLELSLALEDADLTDEPGLRALCERYNRDKGLAGSDLALR-TRERGKTSLRLPQQFVRLRFFDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAEALKDLIGSDRVLVPESPARAVAVGAVLHGLAPTSVVVARRARRTVAYGRFDW 606
            F  F+ ++ GKE+   +   S    L L R +  ++K+      + G TF L + L L     +D+        R + +K +  S  A + T E  K   +  + F  LRFF+  +  I+AH+ E L  +  +  +++ IL+ GGFAEC ++  A+++   + R++VPE    +V  GAV  G  P ++   R+AR T  YG   W
Sbjct:  266 FEMFIEDIIGKESMKQLRTTSFDDYLELMRNF--EMKKRSVKPGKEGNTF-LSVPLGLVQIVKSDK-------SRKSLEKAIENSPYAGKVTFENWKLKWK-NENF--LRFFEVTIRNIKAHLREILYDS--DMTDVETILMVGGFAECEVVQNAIREHFKTKRLVVPEDAGVSVLKGAVFFGHVPDAIS-RRKARYT--YGIQSW 453          
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Match: A0A6G1R296_9TELE (Heat shock 70 kDa protein 12A n=17 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6G1R296_9TELE)

HSP 1 Score: 54.3 bits (129), Expect = 4.080e-5
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 1
Query:  322 FDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAEALKDLI-GSDRVLVPESPARAVAVGAVLHGLAPTSVVVARRARRTVAYGRFDWF 609
            F P +D I  H+ E     + E  ++  + L GGFAE PLL +A++D++ G  R+++P      +  GAVL GL P SV+  RR+  T   G  + F
Sbjct:  449 FKPTIDHIIQHLTELFD--KPEVSDIKFLFLVGGFAESPLLQQAVQDMLQGRSRIIIPHDVGLTILKGAVLFGLDP-SVIKVRRSPLTYGVGVLNRF 542          
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Match: UPI001C4B4690 (heat shock 70 kDa protein 12A isoform X2 n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4B4690)

HSP 1 Score: 54.3 bits (129), Expect = 4.080e-5
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 1
Query:  322 FDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAEALKDLI-GSDRVLVPESPARAVAVGAVLHGLAPTSVVVARRARRTVAYGRFDWF 609
            F P +D I  H+ E     + E  ++  + L GGFAE PLL +A++D++ G  R+++P      +  GAVL GL P S++  RR+  T   G  + F
Sbjct:  449 FKPTIDHIIQHLTELFE--KPEVSDIKFLFLVGGFAESPLLQQAVQDMLQGRSRIIIPHDVGLTILKGAVLFGLDP-SIIKVRRSPLTYGVGVLNRF 542          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107237.1556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A8B8D2P8_CRAVI1.310e-729.73LOW QUALITY PROTEIN: heat shock 70 kDa protein 12A... [more]
UPI00145801B84.900e-637.04heat shock 70 kDa protein 12A-like n=1 Tax=Pecten ... [more]
A0A8B8BD05_CRAVI8.780e-635.64heat shock 70 kDa protein 12A-like n=4 Tax=Crassos... [more]
A0A1C9U2Z8_MIZYE8.860e-627.23Heat shock 70 kDa protein n=1 Tax=Mizuhopecten yes... [more]
UPI00148A473C8.940e-629.29heat shock 70 kDa protein 12A isoform X1 n=2 Tax=C... [more]
A0A8H7UYW5_9FUNG3.220e-535.87Uncharacterized protein n=1 Tax=Mucor saturninus T... [more]
UPI001458804C3.950e-526.29heat shock 70 kDa protein 12A-like n=1 Tax=Pecten ... [more]
K1QEG3_CRAGI3.960e-529.13Heat shock 70 kDa protein 12B n=2 Tax=Crassostrea ... [more]
A0A6G1R296_9TELE4.080e-536.08Heat shock 70 kDa protein 12A n=17 Tax=Percomorpha... [more]
UPI001C4B46904.080e-535.05heat shock 70 kDa protein 12A isoform X2 n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107237contigM-pyrifera_M_contig107237:2..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.4
Seed ortholog evalue9e-09
Seed eggNOG ortholog3067.XP_002953730.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGs3808D@33090,COG0443@1,KOG0101@2759
COG Functional cat.O
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Exons1
Model size621
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.6852474-CDS-M-pyrifera_M_contig107237:1..6221622815582.6852474-CDS-M-pyrifera_M_contig107237:1..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107237 2..622 +
1692277474.1364806-CDS-M-pyrifera_M_contig107237:1..6221692277474.1364806-CDS-M-pyrifera_M_contig107237:1..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107237 2..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107237.1556.1prot_M-pyrifera_M_contig107237.1556.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107237 2..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107237.1556.1

>prot_M-pyrifera_M_contig107237.1556.1 ID=prot_M-pyrifera_M_contig107237.1556.1|Name=mRNA_M-pyrifera_M_contig107237.1556.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=207bp
FRDFLSELFGKENWDNVSPASKLALHREWVRDIKEVFRADTRAGGTFKLE
LSLALEDADLTDEPGLRALCERYNRDKGLAGSDLALRTRERGKTSLRLPQ
QFVRLRFFDPIVDRIRAHVAEELAAARAEGRELDVILLAGGFAECPLLAE
ALKDLIGSDRVLVPESPARAVAVGAVLHGLAPTSVVVARRARRTVAYGRF
DWFDADK
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mRNA from alignment at M-pyrifera_M_contig107237:2..622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107237.1556.1 ID=mRNA_M-pyrifera_M_contig107237.1556.1|Name=mRNA_M-pyrifera_M_contig107237.1556.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=621bp|location=Sequence derived from alignment at M-pyrifera_M_contig107237:2..622+ (Macrocystis pyrifera P11B4 male)
TTCCGTGACTTCCTCTCGGAGCTCTTTGGCAAGGAAAACTGGGACAATGT GAGCCCGGCCTCCAAGCTTGCGCTGCACAGGGAGTGGGTGCGGGACATCA AGGAGGTGTTTCGAGCAGACACGAGGGCAGGCGGCACGTTCAAGCTGGAG CTTTCACTGGCGTTGGAAGATGCAGATTTGACCGACGAACCAGGCTTGCG AGCTCTGTGTGAGCGCTACAACCGCGACAAGGGTCTTGCAGGCTCTGATT TGGCGCTGCGAACGAGGGAGCGGGGCAAGACTTCGCTGCGACTACCACAG CAGTTTGTGCGTCTTCGATTCTTCGACCCCATCGTGGACCGCATTCGGGC ACATGTGGCCGAGGAGCTGGCGGCTGCGCGGGCAGAAGGGAGGGAGCTGG ACGTGATCCTGCTGGCTGGGGGGTTCGCAGAGTGTCCGTTGTTGGCCGAG GCGCTCAAGGACCTCATTGGCTCAGACCGGGTGCTCGTTCCCGAGAGCCC AGCTCGGGCAGTGGCAGTGGGGGCGGTGTTGCATGGCTTGGCACCCACTT CGGTGGTGGTCGCGAGGAGGGCCAGGCGCACCGTGGCCTACGGCAGGTTC GACTGGTTTGACGCCGACAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107237:2..622+

>mRNA_M-pyrifera_M_contig107237.1556.1 ID=mRNA_M-pyrifera_M_contig107237.1556.1|Name=mRNA_M-pyrifera_M_contig107237.1556.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1242bp|location=Sequence derived from alignment at M-pyrifera_M_contig107237:2..622+ (Macrocystis pyrifera P11B4 male)
TTCCGTGACTTCCTCTCGGAGCTCTTTGGCAAGGAAAACTGGGACAATGT
GAGCCCGGCCTCCAAGCTTGCGCTGCACAGGGAGTGGGTGCGGGACATCA
AGGAGGTGTTTCGAGCAGACACGAGGGCAGGCGGCACGTTCAAGCTGGAG
CTTTCACTGGCGTTGGAAGATGCAGATTTGACCGACGAACCAGGCTTGCG
AGCTCTGTGTGAGCGCTACAACCGCGACAAGGGTCTTGCAGGCTCTGATT
TGGCGCTGCGAACGAGGGAGCGGGGCAAGACTTCGCTGCGACTACCACAG
CAGTTTGTGCGTCTTCGATTCTTCGACCCCATCGTGGACCGCATTCGGGC
ACATGTGGCCGAGGAGCTGGCGGCTGCGCGGGCAGAAGGGAGGGAGCTGG
ACGTGATCCTGCTGGCTGGGGGGTTCGCAGAGTGTCCGTTGTTGGCCGAG
GCGCTCAAGGACCTCATTGGCTCAGACCGGGTGCTCGTTCCCGAGAGCCC
AGCTCGGGCAGTGGCAGTGGGGGCGGTGTTGCATGGCTTGGCACCCACTT
CGGTGGTGGTCGCGAGGAGGGCCAGGCGCACCGTGGCCTACGGCAGGTTC
GACTGGTTTGACGCCGACAAATTCCGTGACTTCCTCTCGGAGCTCTTTGG
CAAGGAAAACTGGGACAATGTGAGCCCGGCCTCCAAGCTTGCGCTGCACA
GGGAGTGGGTGCGGGACATCAAGGAGGTGTTTCGAGCAGACACGAGGGCA
GGCGGCACGTTCAAGCTGGAGCTTTCACTGGCGTTGGAAGATGCAGATTT
GACCGACGAACCAGGCTTGCGAGCTCTGTGTGAGCGCTACAACCGCGACA
AGGGTCTTGCAGGCTCTGATTTGGCGCTGCGAACGAGGGAGCGGGGCAAG
ACTTCGCTGCGACTACCACAGCAGTTTGTGCGTCTTCGATTCTTCGACCC
CATCGTGGACCGCATTCGGGCACATGTGGCCGAGGAGCTGGCGGCTGCGC
GGGCAGAAGGGAGGGAGCTGGACGTGATCCTGCTGGCTGGGGGGTTCGCA
GAGTGTCCGTTGTTGGCCGAGGCGCTCAAGGACCTCATTGGCTCAGACCG
GGTGCTCGTTCCCGAGAGCCCAGCTCGGGCAGTGGCAGTGGGGGCGGTGT
TGCATGGCTTGGCACCCACTTCGGTGGTGGTCGCGAGGAGGGCCAGGCGC
ACCGTGGCCTACGGCAGGTTCGACTGGTTTGACGCCGACAAA
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