mRNA_M-pyrifera_M_contig107218.1550.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107218.1550.1
Unique NamemRNA_M-pyrifera_M_contig107218.1550.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Match: A0A7X5WQI1_9ACTN (DUF3499 family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WQI1_9ACTN)

HSP 1 Score: 121 bits (304), Expect = 1.460e-34
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 1
Query:   13 VNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAPHADRTQPPKGWELRDRRAPAP-VQRLRYAG 237
            VNRRCARPGCG  A  TLSYAYAQRTVWLDDL  ED PANHDLC  H DRT+PP+GWELRDRR     + RLRYAG
Sbjct:    4 VNRRCARPGCGSSATVTLSYAYAQRTVWLDDLSQEDHPANHDLCDAHGDRTRPPRGWELRDRRGATEWLPRLRYAG 79          
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Match: A0A358A2C4_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A2C4_9ACTN)

HSP 1 Score: 122 bits (305), Expect = 1.840e-34
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    1 TVWSVNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAPHADRTQPPKGWELRDRRAPA 210
            T  S++RRCARPGCG+PA TTLSY YAQR VWLDDLH + SPANHDLC  HADRTQPPKGWELRDRR  A
Sbjct:   20 TFASMSRRCARPGCGQPADTTLSYDYAQRLVWLDDLHLDKSPANHDLCRRHADRTQPPKGWELRDRRTAA 89          
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Match: A0A2D6UAP9_9ACTN (Uncharacterized protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UAP9_9ACTN)

HSP 1 Score: 118 bits (296), Expect = 2.230e-33
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1
Query:   13 VNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAPHADRTQPPKGWELRDRRAPA 210
            ++RRCARPGCG+PA TTLSY YA+R VWLDDLH ++SPANHDLC  HADRTQPPKGWELRDRR+ A
Sbjct:    1 MSRRCARPGCGQPADTTLSYDYARRLVWLDDLHFDNSPANHDLCRRHADRTQPPKGWELRDRRSAA 66          
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Match: A0A7K1ZCQ6_9ACTN (DUF3499 family protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZCQ6_9ACTN)

HSP 1 Score: 114 bits (285), Expect = 2.060e-31
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 TVWSVNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAPHADRTQPPKGWELRDRRA 204
            TV +VNRRCARPGC   AATTLS+ YAQ+ VW+DDLH EDSPANHDLC  HADRT+PP+GW+L DRR+
Sbjct:    6 TVPNVNRRCARPGCRHLAATTLSFLYAQQIVWIDDLHVEDSPANHDLCTIHADRTRPPRGWDLDDRRS 73          
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Match: A0A431IC85_9ACTN (DUF3499 family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A431IC85_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 5.680e-26
Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 TVWSVNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAPHADRTQPPKGWELRDRRA 204
            TV +V+R CARPGCGRPA  TLSYAYA+  VWL+DL AED P  HDLC  HAD  + P+GWELRD RA
Sbjct:   27 TVPAVSRSCARPGCGRPAVATLSYAYAEGVVWLEDLAAEDHPMVHDLCLLHADTVRVPRGWELRDGRA 94          
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Match: A0A538DNH8_9ACTN (DUF3499 family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DNH8_9ACTN)

HSP 1 Score: 99.4 bits (246), Expect = 1.140e-25
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   13 VNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAPHADRTQPPKGWELRDRR 201
            V+R CARPGC  P+ATTLSY YA RTVWL+DLH +  PANHDLC  HA R  PP GWEL DRR
Sbjct:    4 VHRSCARPGCSSPSATTLSYDYASRTVWLEDLHPDAHPANHDLCPRHAARMTPPNGWELVDRR 66          
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Match: UPI001D12DA57 (DUF3499 domain-containing protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D12DA57)

HSP 1 Score: 96.7 bits (239), Expect = 1.190e-24
Identity = 43/63 (68.25%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   13 VNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAPHADRTQPPKGWELRDRR 201
            ++R CARPGCGRPA  TLSYAYA   VWL+DL AED P  HDLCA HAD  + P GWELRD R
Sbjct:    1 MSRSCARPGCGRPAVATLSYAYADGVVWLEDLAAEDHPMVHDLCAQHADGVRVPNGWELRDER 63          
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Match: A0A7Y2DET8_9ACTN (DUF3499 family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DET8_9ACTN)

HSP 1 Score: 84.7 bits (208), Expect = 6.270e-20
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   13 VNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAPHADRTQPPKGWELRDRRA 204
            + R CARP C  PAA T++++Y ++TVWLD L  E +P +HDLC  HADRT PP GW L DRRA
Sbjct:    1 MERPCARPTCTNPAAATMTFSYTEQTVWLDVLTVEVNPMDHDLCLMHADRTTPPVGWMLDDRRA 64          
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Match: A0A7X7D3P1_9ACTN (DUF3499 family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D3P1_9ACTN)

HSP 1 Score: 84.3 bits (207), Expect = 8.440e-20
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   13 VNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAPHADRTQPPKGWELRDRRA 204
            + R CARPGCG  A  TLSY Y   TVWL+ L  E  P  HDLC  HA RT PP+GW+L DRR+
Sbjct:    1 MRRSCARPGCGEAATVTLSYDYGGATVWLESLAPEGHPMTHDLCDRHATRTNPPRGWQLVDRRS 64          
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Match: A0A8J3ESW1_9ACTN (Uncharacterized protein n=2 Tax=Egicoccus halophilus TaxID=1670830 RepID=A0A8J3ESW1_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 2.090e-19
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   10 SVNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAPHADRTQPPKGWELRDRR 201
            +  R C+RP C  PA+ TL++ YA+R  W+ DL A   P ++DLCAPHA+RTQPP GW+LRDRR
Sbjct:   37 AAERACSRPSCPAPASATLTFNYAEREAWITDLAASRLPQSYDLCAPHAERTQPPHGWDLRDRR 100          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107218.1550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WQI1_9ACTN1.460e-3475.00DUF3499 family protein n=1 Tax=Actinomycetia bacte... [more]
A0A358A2C4_9ACTN1.840e-3478.57Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2D6UAP9_9ACTN2.230e-3378.79Uncharacterized protein n=3 Tax=Acidimicrobiaceae ... [more]
A0A7K1ZCQ6_9ACTN2.060e-3173.53DUF3499 family protein n=2 Tax=Acidimicrobiaceae b... [more]
A0A431IC85_9ACTN5.680e-2667.65DUF3499 family protein n=1 Tax=Acidimicrobiia bact... [more]
A0A538DNH8_9ACTN1.140e-2569.84DUF3499 family protein n=1 Tax=Actinomycetia bacte... [more]
UPI001D12DA571.190e-2468.25DUF3499 domain-containing protein n=1 Tax=Aquihabi... [more]
A0A7Y2DET8_9ACTN6.270e-2057.81DUF3499 family protein n=1 Tax=Acidimicrobiales ba... [more]
A0A7X7D3P1_9ACTN8.440e-2057.81DUF3499 family protein n=1 Tax=Acidimicrobiales ba... [more]
A0A8J3ESW1_9ACTN2.090e-1956.25Uncharacterized protein n=2 Tax=Egicoccus halophil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107218contigM-pyrifera_M_contig107218:93..332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.3
Seed ortholog evalue7.5e-12
Seed eggNOG ortholog1203567.HMPREF1286_01003
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3499)
EggNOG OGs22NKM@1653,2C7XW@1,2IQ5R@201174,32RR4@2
COG Functional cat.S
Best tax levelCorynebacteriaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.4794462-CDS-M-pyrifera_M_contig107218:92..3321622815582.4794462-CDS-M-pyrifera_M_contig107218:92..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107218 93..332 -
1692277474.0755427-CDS-M-pyrifera_M_contig107218:92..3321692277474.0755427-CDS-M-pyrifera_M_contig107218:92..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107218 93..332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107218.1550.1prot_M-pyrifera_M_contig107218.1550.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107218 93..332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107218.1550.1

>prot_M-pyrifera_M_contig107218.1550.1 ID=prot_M-pyrifera_M_contig107218.1550.1|Name=mRNA_M-pyrifera_M_contig107218.1550.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
TVWSVNRRCARPGCGRPAATTLSYAYAQRTVWLDDLHAEDSPANHDLCAP
HADRTQPPKGWELRDRRAPAPVQRLRYAG*
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mRNA from alignment at M-pyrifera_M_contig107218:93..332-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107218.1550.1 ID=mRNA_M-pyrifera_M_contig107218.1550.1|Name=mRNA_M-pyrifera_M_contig107218.1550.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig107218:93..332- (Macrocystis pyrifera P11B4 male)
ACGGTCTGGTCTGTGAATCGTCGTTGTGCTCGACCCGGGTGTGGCCGTCC GGCCGCCACCACGCTCTCCTACGCCTACGCGCAGCGCACCGTGTGGCTCG ACGATCTCCACGCCGAGGACTCACCCGCGAATCACGACCTCTGTGCGCCC CACGCTGATCGGACACAGCCCCCGAAGGGGTGGGAGCTGCGCGACCGTCG CGCTCCCGCGCCGGTCCAACGCCTGCGCTACGCCGGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107218:93..332-

>mRNA_M-pyrifera_M_contig107218.1550.1 ID=mRNA_M-pyrifera_M_contig107218.1550.1|Name=mRNA_M-pyrifera_M_contig107218.1550.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig107218:93..332- (Macrocystis pyrifera P11B4 male)
ACGGTCTGGTCTGTGAATCGTCGTTGTGCTCGACCCGGGTGTGGCCGTCC
GGCCGCCACCACGCTCTCCTACGCCTACGCGCAGCGCACCGTGTGGCTCG
ACGATCTCCACGCCGAGGACTCACCCGCGAATCACGACCTCTGTGCGCCC
CACGCTGATCGGACACAGCCCCCGAAGGGGTGGGAGCTGCGCGACCGTCG
CGCTCCCGCGCCGGTCCAACGCCTGCGCTACGCCGGCTAGACGGTCTGGT
CTGTGAATCGTCGTTGTGCTCGACCCGGGTGTGGCCGTCCGGCCGCCACC
ACGCTCTCCTACGCCTACGCGCAGCGCACCGTGTGGCTCGACGATCTCCA
CGCCGAGGACTCACCCGCGAATCACGACCTCTGTGCGCCCCACGCTGATC
GGACACAGCCCCCGAAGGGGTGGGAGCTGCGCGACCGTCGCGCTCCCGCG
CCGGTCCAACGCCTGCGCTACGCCGGCTAG
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