mRNA_M-pyrifera_M_contig107215.1549.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107215.1549.1
Unique NamemRNA_M-pyrifera_M_contig107215.1549.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107215.1549.1 vs. uniprot
Match: A0A7S3HEQ3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEQ3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.480e-15
Identity = 57/160 (35.62%), Postives = 75/160 (46.88%), Query Frame = 1 
Query:  127 VFFPRAEEGRWFVGLLGEAKGG--------LQSALLALCLHRHFSEWRFCVSFIRHGGVKVLGGLLSHENPFLASQALFSVSALFSPPSGCGFDWFDAAATREEKVLHVRLLQA--QPTLVPALLHLRNSHIPNGSFLALQLLAFCLSWTRSLHCPSNAL 576
            +F PR E+  ++  LL  + G         L   L++L    H   W F   FI  GG+ +L  ++  EN +L  Q L     L        FDWF  A +  EK LH RLL     P L+  LL+ R    P GSF ALQL+AF LSW R+L+     L
Sbjct:   38 LFNPREEQVAYYPKLLAASHGAPADHPLTKLAPLLVSLLFLVHRKRWAFMKEFILQGGLDILAAMIDDENLYLRGQVL---EVLLCATDCDTFDWFKPADSYSEKQLHSRLLALGRSPFLLRKLLNNRVGSYPGGSFRALQLIAFILSWIRALYTADQKL 194
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BLAST of mRNA_M-pyrifera_M_contig107215.1549.1 vs. uniprot
Match: L1J5F5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5F5_GUITC)

HSP 1 Score: 79.3 bits (194), Expect = 6.150e-14
Identity = 62/184 (33.70%), Postives = 90/184 (48.91%), Query Frame = 1 
Query:   61 PKVEVLGRVVGEPVDDARYRQLVFFPRAEEGRWFVGLLGEAKGGLQ----------SALLALCLHRHFSEWRFCVSFIRHGGVKVLGGLLSHENPFLASQALFSVSALFSPPSGCGFDWFDAAATREEKVLHVRLLQAQP-TLVPALL-HLRNSHIPNGSFLALQLLAFCLSWTRSLHCPSNAL 576
            P    +  V+   + DA+ RQ++F+P  EE   +  LL  +    Q          SA+  L L RH  EW+    FI  GG   L  LL  +N +L SQA+ ++S L         DW +      E  +H RL Q     ++P LL ++RNS+ P GS+ AL++LAF LSW R+L+     L
Sbjct:   43 PPTSAMQTVLSRNLADAQVRQILFWPTDEEISLYPSLLAVSNENAQKDKSVTKTLTSAMPMLYL-RHCREWKLARIFIMSGGYSALSKLLIDKNLYLRSQAMETLSLLTDQNDN--IDWLNTKNIDSE--IHKRLFQMNKGEMIPNLLANMRNSY-PGGSYTALRILAFFLSWVRALYTKDKVL 220
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BLAST of mRNA_M-pyrifera_M_contig107215.1549.1 vs. uniprot
Match: A0A482SF10_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF10_9ARCH)

HSP 1 Score: 56.6 bits (135), Expect = 9.940e-7
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:  253 VSFIRHGGVKVLGGLLSHENPFLASQALFSVSALFSPPSGCGFDWFDAAATREEKVLHVRLLQ--AQPTLVPALLHLRNSHIPNGSFLALQLLAFCLSWTR 549
            +SFI+ GG++ +  L++ EN +  SQA   +    S  +   +DWF    T +++ +H  +LQ   + +L    +  R +  P GSF ALQ+LAF LSW R
Sbjct:    1 MSFIQTGGLRAITILVTSENLYERSQA---IEVFLSAINTDMYDWFVEPLTEQDREMHQSMLQLGTEYSLANRAIDNRVNSYPGGSFRALQILAFWLSWCR 98
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107215.1549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3HEQ3_9STRA3.480e-1535.63Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
L1J5F5_GUITC6.150e-1433.70Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A482SF10_9ARCH9.940e-734.65Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107215contigM-pyrifera_M_contig107215:36..611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue5.2e-19
Seed eggNOG ortholog112098.XP_008615236.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CJJ3@1,2S3TT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size576
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.4428132-CDS-M-pyrifera_M_contig107215:35..6111622815582.4428132-CDS-M-pyrifera_M_contig107215:35..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107215 36..611 -
1692277474.0659084-CDS-M-pyrifera_M_contig107215:35..6111692277474.0659084-CDS-M-pyrifera_M_contig107215:35..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107215 36..611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107215.1549.1prot_M-pyrifera_M_contig107215.1549.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107215 36..611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107215.1549.1

>prot_M-pyrifera_M_contig107215.1549.1 ID=prot_M-pyrifera_M_contig107215.1549.1|Name=mRNA_M-pyrifera_M_contig107215.1549.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
DGPKTLREALVRRLREEWRSPKVEVLGRVVGEPVDDARYRQLVFFPRAEE
GRWFVGLLGEAKGGLQSALLALCLHRHFSEWRFCVSFIRHGGVKVLGGLL
SHENPFLASQALFSVSALFSPPSGCGFDWFDAAATREEKVLHVRLLQAQP
TLVPALLHLRNSHIPNGSFLALQLLAFCLSWTRSLHCPSNAL
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mRNA from alignment at M-pyrifera_M_contig107215:36..611-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107215.1549.1 ID=mRNA_M-pyrifera_M_contig107215.1549.1|Name=mRNA_M-pyrifera_M_contig107215.1549.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig107215:36..611- (Macrocystis pyrifera P11B4 male)
GATGGACCCAAAACCTTGCGTGAGGCGCTTGTGCGTCGGCTCCGCGAAGA
ATGGCGCAGTCCAAAGGTGGAGGTTTTGGGGCGGGTGGTGGGGGAGCCGG
TGGATGATGCCCGGTACCGACAGCTGGTGTTCTTCCCGCGTGCGGAAGAA
GGTCGTTGGTTTGTGGGATTGCTTGGGGAAGCGAAGGGGGGACTGCAAAG
CGCTTTGCTGGCATTGTGCCTCCATCGGCACTTTTCCGAGTGGCGGTTTT
GCGTTTCTTTTATCCGTCACGGGGGTGTGAAGGTGCTGGGTGGGTTGCTG
TCCCACGAAAACCCCTTTTTGGCGTCACAGGCGCTTTTTTCTGTTTCTGC
GCTTTTTTCTCCCCCTTCTGGGTGTGGGTTTGACTGGTTCGATGCTGCTG
CGACTAGGGAAGAGAAGGTGCTGCATGTGCGTCTGCTGCAAGCCCAACCC
ACCCTCGTACCGGCTCTCTTGCACCTGCGCAACTCCCACATTCCCAACGG
CTCTTTCCTCGCCCTGCAACTCCTGGCATTCTGCCTGTCGTGGACAAGAA
GCCTCCACTGCCCCTCCAACGCCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107215:36..611-

>mRNA_M-pyrifera_M_contig107215.1549.1 ID=mRNA_M-pyrifera_M_contig107215.1549.1|Name=mRNA_M-pyrifera_M_contig107215.1549.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig107215:36..611- (Macrocystis pyrifera P11B4 male)
GATGGACCCAAAACCTTGCGTGAGGCGCTTGTGCGTCGGCTCCGCGAAGA
ATGGCGCAGTCCAAAGGTGGAGGTTTTGGGGCGGGTGGTGGGGGAGCCGG
TGGATGATGCCCGGTACCGACAGCTGGTGTTCTTCCCGCGTGCGGAAGAA
GGTCGTTGGTTTGTGGGATTGCTTGGGGAAGCGAAGGGGGGACTGCAAAG
CGCTTTGCTGGCATTGTGCCTCCATCGGCACTTTTCCGAGTGGCGGTTTT
GCGTTTCTTTTATCCGTCACGGGGGTGTGAAGGTGCTGGGTGGGTTGCTG
TCCCACGAAAACCCCTTTTTGGCGTCACAGGCGCTTTTTTCTGTTTCTGC
GCTTTTTTCTCCCCCTTCTGGGTGTGGGTTTGACTGGTTCGATGCTGCTG
CGACTAGGGAAGAGAAGGTGCTGCATGTGCGTCTGCTGCAAGCCCAACCC
ACCCTCGTACCGGCTCTCTTGCACCTGCGCAACTCCCACATTCCCAACGG
CTCTTTCCTCGCCCTGCAACTCCTGGCATTCTGCCTGTCGTGGACAAGAA
GCCTCCACTGCCCCTCCAACGCCCTCGATGGACCCAAAACCTTGCGTGAG
GCGCTTGTGCGTCGGCTCCGCGAAGAATGGCGCAGTCCAAAGGTGGAGGT
TTTGGGGCGGGTGGTGGGGGAGCCGGTGGATGATGCCCGGTACCGACAGC
TGGTGTTCTTCCCGCGTGCGGAAGAAGGTCGTTGGTTTGTGGGATTGCTT
GGGGAAGCGAAGGGGGGACTGCAAAGCGCTTTGCTGGCATTGTGCCTCCA
TCGGCACTTTTCCGAGTGGCGGTTTTGCGTTTCTTTTATCCGTCACGGGG
GTGTGAAGGTGCTGGGTGGGTTGCTGTCCCACGAAAACCCCTTTTTGGCG
TCACAGGCGCTTTTTTCTGTTTCTGCGCTTTTTTCTCCCCCTTCTGGGTG
TGGGTTTGACTGGTTCGATGCTGCTGCGACTAGGGAAGAGAAGGTGCTGC
ATGTGCGTCTGCTGCAAGCCCAACCCACCCTCGTACCGGCTCTCTTGCAC
CTGCGCAACTCCCACATTCCCAACGGCTCTTTCCTCGCCCTGCAACTCCT
GGCATTCTGCCTGTCGTGGACAAGAAGCCTCCACTGCCCCTCCAACGCCC
TC
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