mRNA_M-pyrifera_M_contig107187.1538.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107187.1538.1
Unique NamemRNA_M-pyrifera_M_contig107187.1538.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Match: A0A7S2WKA3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKA3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.410e-17
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    4 ELVAEVSAEGTPIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHGGEHRHDGLPHTLEHLVFMGSDEYPFK 228
            E+VA    +G  ++++ S +TGMRV  V  E PMV+ + +L+TEA T+   H++DGLPHTLEHLVF+GS ++P+K
Sbjct:   12 EVVASPVVDGVAVKLYRSAKTGMRVLKVDAEGPMVNLYGVLSTEAVTNAWSHKNDGLPHTLEHLVFLGSKDFPYK 86          
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Match: UPI000BA7F4BB (uncharacterized protein C05D11.1-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7F4BB)

HSP 1 Score: 84.7 bits (208), Expect = 1.870e-17
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    4 ELVAEVSAEGT-PIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHGGEHRHDGLPHTLEHLVFMGSDEYPFK 228
            EL+  + A+G  PI  + SK+TGM+VC   VE P+VHG++ +ATEA      H  DGLPHTLEHL+F+GS+ YP+K
Sbjct:   18 ELLYSLKADGNVPISKYRSKKTGMQVCIAGVEGPIVHGYLCIATEA------HDDDGLPHTLEHLIFLGSEHYPYK 87          
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Match: A0A2G8JRB6_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JRB6_STIJA)

HSP 1 Score: 82.0 bits (201), Expect = 1.530e-16
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    7 LVAEVSAEGTPIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHGGEHRHDGLPHTLEHLVFMGSDEYPFK 228
            L  EVS    P+  ++SKRTG+ +C   VE P+V+GF  LATEA      H  DGLPHTLEHL+F+GS++YP+K
Sbjct:   10 LCQEVSNGLVPVTKYKSKRTGLTICLAEVEGPLVNGFFCLATEA------HDDDGLPHTLEHLIFLGSEDYPYK 77          
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Match: UPI0003F06F6F (uncharacterized protein C05D11.1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F06F6F)

HSP 1 Score: 82.0 bits (201), Expect = 1.690e-16
Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    4 ELVAEVSAEGT-PIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHGGEHRHDGLPHTLEHLVFMGSDEYPFK 228
            E V  V A G  P+  ++SK TGM VC   VE P+V+G+  LATEA      H  DGLPHTLEHLVFMGS++YPFK
Sbjct:    6 EKVCSVVANGVIPVSKYKSKNTGMVVCIAEVEGPLVNGYFCLATEA------HDDDGLPHTLEHLVFMGSEKYPFK 75          
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Match: UPI001E1DF6CC (uncharacterized protein C05D11.1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF6CC)

HSP 1 Score: 82.0 bits (201), Expect = 1.700e-16
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    4 ELVAEVSAEGT-PIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHGGEHRHDGLPHTLEHLVFMGSDEYPFK 228
            E+++ V A+G  P+  ++SK TG+ VC   VE P+V+G+  LATEA      H  DGLPHTLEHLVFMGS+++P+K
Sbjct:    7 EIISSVKADGNIPVSKYKSKSTGLSVCIAEVEGPLVNGYFCLATEA------HDDDGLPHTLEHLVFMGSEDFPYK 76          
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Match: UPI000644FC93 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644FC93)

HSP 1 Score: 81.3 bits (199), Expect = 3.150e-16
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    4 ELVAEVSAEGTPIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHGGEHRHDGLPHTLEHLVFMGSDEYPFK 228
            EL+ + +  G  I  W  KR+G+ + NV   SP+VHG   LATE       HRHDG PHTLEHLVFMGS++YP+K
Sbjct:   13 ELLVKFNLRGKDIEKWRLKRSGLVLYNVKDTSPLVHGEFFLATEI------HRHDGCPHTLEHLVFMGSEDYPYK 81          
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Match: A0A6P5ANN6_BRABE (Presequence protease, mitochondrial n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5ANN6_BRABE)

HSP 1 Score: 80.9 bits (198), Expect = 4.320e-16
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 ELVAEVSAEGT-PIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHGGEHRHDGLPHTLEHLVFMGSDEYPFK 228
            ELV    A G  P+  + SK TG+ VC   VE P+V G+  LATEA      H  DGLPHTLEHLVFMGS++YP+K
Sbjct:    6 ELVCSAKANGVIPVDKYRSKETGLTVCIAQVEGPLVKGYFCLATEA------HDDDGLPHTLEHLVFMGSEDYPYK 75          
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Match: A0A151ZIM5_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZIM5_9MYCE)

HSP 1 Score: 80.5 bits (197), Expect = 5.910e-16
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    4 ELVAEVSAEGTPIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHGGEHRHDGLPHTLEHLVFMGSDEYPFK 228
            +L+++ +    P  +W+SK +G+ + NV  E PMVHG+V++ TE       H  DG PHTLEHL+F+GS++YP+K
Sbjct:    8 DLISKFNVGNIPFELWKSKVSGITIYNVKTEGPMVHGYVVVPTEG------HSDDGCPHTLEHLIFLGSEDYPYK 76          
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Match: UPI000F67320F (uncharacterized protein C05D11.1-like isoform X1 n=9 Tax=Penaeus TaxID=133894 RepID=UPI000F67320F)

HSP 1 Score: 80.5 bits (197), Expect = 5.910e-16
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    4 ELVAEVSAEGT-PIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHGGEHRHDGLPHTLEHLVFMGSDEYPFK 228
            E + E+ A GT P+  + S+RTGM V    VE P+V+G+  LATEA      H  DGLPHTLEHLVF+GS+EYP+K
Sbjct:   37 EFLCELRASGTIPVVKYRSRRTGMNVVIARVEGPVVNGYFTLATEA------HDDDGLPHTLEHLVFLGSEEYPYK 106          
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Match: A0A7M7P4V9_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7P4V9_STRPU)

HSP 1 Score: 80.1 bits (196), Expect = 6.990e-16
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    4 ELVAEVSAEG-TPIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHGGEHRHDGLPHTLEHLVFMGSDEYPFK 228
            E +++V + G  P+  + S  TG+ VC   VE P+V+G+ +LATEA      H  DGLPHTLEHL+F+GS+EYPFK
Sbjct:    6 EKISDVVSNGIVPVTKYRSTETGLTVCLAQVEGPLVNGYFVLATEA------HDDDGLPHTLEHLIFLGSEEYPFK 75          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107187.1538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WKA3_9STRA1.410e-1749.33Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
UPI000BA7F4BB1.870e-1752.63uncharacterized protein C05D11.1-like n=1 Tax=Limu... [more]
A0A2G8JRB6_STIJA1.530e-1652.70Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
UPI0003F06F6F1.690e-1656.58uncharacterized protein C05D11.1-like n=1 Tax=Sacc... [more]
UPI001E1DF6CC1.700e-1651.32uncharacterized protein C05D11.1-like n=1 Tax=Merc... [more]
UPI000644FC933.150e-1652.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6P5ANN6_BRABE4.320e-1653.95Presequence protease, mitochondrial n=5 Tax=Branch... [more]
A0A151ZIM5_9MYCE5.910e-1644.00Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
UPI000F67320F5.910e-1653.95uncharacterized protein C05D11.1-like isoform X1 n... [more]
A0A7M7P4V9_STRPU6.990e-1650.00Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107187contigM-pyrifera_M_contig107187:77..365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score82.0
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog10224.XP_006821746.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase M16 inactive domain
EggNOG OGs38C6N@33154,3C52M@33208,3E4U7@33213,COG1026@1,KOG0961@2759
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.7937465-CDS-M-pyrifera_M_contig107187:76..1841622815581.7937465-CDS-M-pyrifera_M_contig107187:76..184Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107187 77..184 -
1692277473.7628195-CDS-M-pyrifera_M_contig107187:76..1841692277473.7628195-CDS-M-pyrifera_M_contig107187:76..184Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107187 77..184 -
1622815581.808084-CDS-M-pyrifera_M_contig107187:245..3651622815581.808084-CDS-M-pyrifera_M_contig107187:245..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107187 246..365 -
1692277473.7738388-CDS-M-pyrifera_M_contig107187:245..3651692277473.7738388-CDS-M-pyrifera_M_contig107187:245..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107187 246..365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107187.1538.1prot_M-pyrifera_M_contig107187.1538.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107187 77..365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107187.1538.1

>prot_M-pyrifera_M_contig107187.1538.1 ID=prot_M-pyrifera_M_contig107187.1538.1|Name=mRNA_M-pyrifera_M_contig107187.1538.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
LELVAEVSAEGTPIRMWESKRTGMRVCNVAVESPMVHGFVILATEAKTHG
GEHRHDGLPHTLEHLVFMGSDEYPFK
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mRNA from alignment at M-pyrifera_M_contig107187:77..365-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107187.1538.1 ID=mRNA_M-pyrifera_M_contig107187.1538.1|Name=mRNA_M-pyrifera_M_contig107187.1538.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=289bp|location=Sequence derived from alignment at M-pyrifera_M_contig107187:77..365- (Macrocystis pyrifera P11B4 male)
CTGGAGCTTGTCGCGGAGGTATCAGCGGAGGGAACCCCCATCCGTATGTG GGAGTCTAAGCGTACGGGTATGCGTGTATGCAATGTGGCTGTCGAGAGCC CCATGGTGCACGGCTTTGTGGTGCGTCTGCGTTTGCCGCCCCCTACATCG CTGCTGCTGCTTGTTGACGCGCATGGAGCAGATCCTGGCGACTGAAGCCA AGACTCATGGTGGCGAGCACCGCCACGATGGTCTACCGCATACGCTAGAG CATTTGGTGTTCATGGGAAGCGATGAGTACCCGTTCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107187:77..365-

>mRNA_M-pyrifera_M_contig107187.1538.1 ID=mRNA_M-pyrifera_M_contig107187.1538.1|Name=mRNA_M-pyrifera_M_contig107187.1538.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig107187:77..365- (Macrocystis pyrifera P11B4 male)
CTGGAGCTTGTCGCGGAGGTATCAGCGGAGGGAACCCCCATCCGTATGTG
GGAGTCTAAGCGTACGGGTATGCGTGTATGCAATGTGGCTGTCGAGAGCC
CCATGGTGCACGGCTTTGTGCTGGAGCTTGTCGCGGAGGTATCAGCGGAG
GGAACCCCCATCCGTATGTGGGAGTCTAAGCGTACGGGTATGCGTGTATG
CAATGTGGCTGTCGAGAGCCCCATGGTGCACGGCTTTGTGATCCTGGCGA
CTGAAGCCAAGACTCATGGTGGCGAGCACCGCCACGATGGTCTACCGCAT
ACGCTAGAGCATTTGGTGTTCATGGGAAGCGATGAGTACCCGTTCAAGAT
CCTGGCGACTGAAGCCAAGACTCATGGTGGCGAGCACCGCCACGATGGTC
TACCGCATACGCTAGAGCATTTGGTGTTCATGGGAAGCGATGAGTACCCG
TTCAAG
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