mRNA_M-pyrifera_M_contig107171.1534.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107171.1534.1
Unique NamemRNA_M-pyrifera_M_contig107171.1534.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Match: A0A225W9S3_9STRA (EF-hand domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W9S3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.250e-10
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 KVINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLARMVRTLHKYEDSDGTVRAFCRFLGI 225
            +++N +YRD         + G  R  F  F+YDWH+ KYGL+ LA++HL +++++L KYE      +   RF+GI
Sbjct:  825 RIVNQLYRDNYETMVSTLQYGNRRMEFSEFIYDWHIRKYGLKTLAQRHLLKLIQSLRKYEKKSFLCQLCLRFMGI 899          
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Match: A0A833X0C8_PHYIN (EF-hand domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833X0C8_PHYIN)

HSP 1 Score: 64.3 bits (155), Expect = 5.950e-10
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    1 KVINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLARMVRTLHKYEDSDGTVRAFCRFLGINCKQVP 243
            +++N +YRD         + G  R  F  F+YDWH+ KYGL+ LA++HL +++++L K+E      +   RF+GI     P
Sbjct:  894 RIVNQLYRDNYEGMVSTLQYGNRRMEFSEFIYDWHIRKYGLKTLAQRHLLKLIQSLRKHEKKAFQCQLCLRFMGIQISISP 974          
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Match: A0A662WS17_9STRA (EF-hand domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WS17_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 8.120e-10
Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    1 KVINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLARMVRTLHKYEDSDGTVRAFCRFLGIN 228
            +V+N +YRD         + G  R  F  F+YDWH+ KYGL+ LA++HL +++++L K+E      +   RF+GI+
Sbjct:  837 RVVNQLYRDNFEGLVASLQYGNRRMEFSEFIYDWHIRKYGLKALAQRHLLKLIQSLRKHEKKVFQCQLCLRFMGIH 912          
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Match: D8U1W7_VOLCA (EF-hand domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U1W7_VOLCA)

HSP 1 Score: 63.5 bits (153), Expect = 1.110e-9
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    4 VINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLARMVRTLHKYEDSDGTVRAFCRFLGI 225
            VI+ IY DK  ADS+ DR+   RQ    F  DWH+T++GLR LAE HL  ++ ++ ++  +   VR F +F G+
Sbjct:  698 VISAIYYDKLQADSVSDRECNPRQRLAEFAVDWHMTRFGLRNLAELHLLDLIASVRQHYKTSVRVRWFGQFTGL 771          
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Match: A0A8J4FH44_9CHLO (EF-hand domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FH44_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 2.070e-9
Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    4 VINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLARMVRTLHKYEDSDGTVRAFCRFLGI 225
             I+ IY DK  AD++ DR+G  RQ    F  DWH+T++GLR LAE HL  ++ ++ ++  +   +R F +F G+
Sbjct:  643 AISAIYYDKMLADAVSDREGNPRQRLADFAVDWHMTRFGLRNLAELHLLDLIASVRQHYKASVRIRWFGQFTGL 716          
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Match: W2QEX3_PHYPN (EF-hand domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2QEX3_PHYPN)

HSP 1 Score: 62.8 bits (151), Expect = 2.070e-9
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 KVINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLARMVRTLHKYEDSDGTVRAFCRFLGI 225
            +++N +YRD         + G  R  F  F+YDWH+ KYGL+ LA++HL +++++L K+E          RF+GI
Sbjct:  953 RIVNQLYRDNYEGMVSTLQYGNRRMEFSEFIYDWHIRKYGLKTLAQRHLLKLIQSLRKHEKKVFQCHLCLRFMGI 1027          
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Match: A0A8J4EP58_9CHLO (EF-hand domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EP58_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 2.830e-9
Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    4 VINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLARMVRTLHKYEDSDGTVRAFCRFLGI 225
             I+ IY DK  AD++ DR+G  RQ    F  DWH+T++GLR LAE HL  ++ ++ ++  +   +R F +F G+
Sbjct:  642 AISAIYYDKMLADAVSDREGNPRQRLADFAVDWHMTRFGLRNLAELHLLDLIGSVRQHYKTSVRIRWFGQFTGL 715          
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Match: A0A6A4FMF3_9STRA (EF-hand domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FMF3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.220e-9
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 KVINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLARMVRTLHKYEDSDGTVRAFCRFLGI 225
            ++IN +YRD         + G  R  F  F+YDWH+ KYGL+ LA++HL +++++L  +E      +   RF+GI
Sbjct:  960 RIINQLYRDNYEGVVSTLQYGNRRMEFSEFIYDWHIRKYGLKALAQRHLLKLIQSLRTHEKKVFQCQLCLRFMGI 1034          
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Match: A0A6A3T116_9STRA (EF-hand domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3T116_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.710e-9
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 KVINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLARMVRTLHKYEDSDGTVRAFCRFLGI 225
            ++IN +YRD         + G  R  F  F+YDWH+ KYGL+ LA++HL +++++L  +E      +   RF+GI
Sbjct:  419 RIINQLYRDNYEGMVSTLQYGSRRMEFSEFIYDWHIRKYGLKALAQRHLLKLIQSLRTHEKKVFQCQLCLRFMGI 493          
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Match: A0A8J5M8P5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M8P5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.800e-8
Identity = 25/89 (28.09%), Postives = 49/89 (55.06%), Query Frame = 1
Query:    1 KVINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLARMVRTLHKYEDSDGTVRAFCRFLGINCKQVPLDDLNVYL 267
            +++N +YRD         + G  R  F  F+YDWH+ KYGL+ LA++HL +++++L K+E      + +   L     +   ++++ Y+
Sbjct:  395 RIVNQLYRDNYEGMVSTLQYGNRRMEFSEFIYDWHIRKYGLKTLAQRHLLKLIQSLRKHEKKSFQCQLYASHLRYRLCKKRFENVSEYM 483          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107171.1534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A225W9S3_9STRA1.250e-1037.33EF-hand domain-containing protein n=1 Tax=Phytopht... [more]
A0A833X0C8_PHYIN5.950e-1034.57EF-hand domain-containing protein n=2 Tax=Phytopht... [more]
A0A662WS17_9STRA8.120e-1036.84EF-hand domain-containing protein (Fragment) n=1 T... [more]
D8U1W7_VOLCA1.110e-941.89EF-hand domain-containing protein n=1 Tax=Volvox c... [more]
A0A8J4FH44_9CHLO2.070e-939.19EF-hand domain-containing protein n=1 Tax=Volvox r... [more]
W2QEX3_PHYPN2.070e-936.00EF-hand domain-containing protein n=11 Tax=Phytoph... [more]
A0A8J4EP58_9CHLO2.830e-939.19EF-hand domain-containing protein n=1 Tax=Volvox a... [more]
A0A6A4FMF3_9STRA7.220e-936.00EF-hand domain-containing protein n=4 Tax=Phytopht... [more]
A0A6A3T116_9STRA9.710e-936.00EF-hand domain-containing protein n=2 Tax=Phytopht... [more]
A0A8J5M8P5_9STRA1.800e-828.09Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107171contigM-pyrifera_M_contig107171:174..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog529818.AMSG_05336T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2E5ZT@1,2SCRG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.6166773-CDS-M-pyrifera_M_contig107171:173..4551622815581.6166773-CDS-M-pyrifera_M_contig107171:173..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107171 174..455 +
1692277473.6804125-CDS-M-pyrifera_M_contig107171:173..4551692277473.6804125-CDS-M-pyrifera_M_contig107171:173..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107171 174..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107171.1534.1prot_M-pyrifera_M_contig107171.1534.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107171 174..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107171.1534.1

>prot_M-pyrifera_M_contig107171.1534.1 ID=prot_M-pyrifera_M_contig107171.1534.1|Name=mRNA_M-pyrifera_M_contig107171.1534.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
KVINHIYRDKASADSMDDRQGRDRQPFHAFVYDWHLTKYGLRRLAEKHLA
RMVRTLHKYEDSDGTVRAFCRFLGINCKQVPLDDLNVYLDVYML
back to top

mRNA from alignment at M-pyrifera_M_contig107171:174..455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107171.1534.1 ID=mRNA_M-pyrifera_M_contig107171.1534.1|Name=mRNA_M-pyrifera_M_contig107171.1534.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig107171:174..455+ (Macrocystis pyrifera P11B4 male)
AAAGTTATCAACCACATCTACAGGGACAAGGCCAGTGCTGACTCTATGGA CGATCGGCAGGGCCGAGACAGGCAGCCATTCCACGCGTTTGTGTACGACT GGCACCTCACCAAGTACGGGTTGCGGCGACTGGCAGAGAAGCACCTTGCG CGCATGGTCCGCACGTTGCACAAGTACGAAGACAGCGATGGCACTGTGAG AGCGTTCTGCCGCTTCCTTGGCATCAACTGCAAACAGGTCCCACTCGATG ACCTGAACGTGTACTTGGACGTGTACATGCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig107171:174..455+

>mRNA_M-pyrifera_M_contig107171.1534.1 ID=mRNA_M-pyrifera_M_contig107171.1534.1|Name=mRNA_M-pyrifera_M_contig107171.1534.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig107171:174..455+ (Macrocystis pyrifera P11B4 male)
AAAGTTATCAACCACATCTACAGGGACAAGGCCAGTGCTGACTCTATGGA
CGATCGGCAGGGCCGAGACAGGCAGCCATTCCACGCGTTTGTGTACGACT
GGCACCTCACCAAGTACGGGTTGCGGCGACTGGCAGAGAAGCACCTTGCG
CGCATGGTCCGCACGTTGCACAAGTACGAAGACAGCGATGGCACTGTGAG
AGCGTTCTGCCGCTTCCTTGGCATCAACTGCAAACAGGTCCCACTCGATG
ACCTGAACGTGTACTTGGACGTGTACATGCTGAAAGTTATCAACCACATC
TACAGGGACAAGGCCAGTGCTGACTCTATGGACGATCGGCAGGGCCGAGA
CAGGCAGCCATTCCACGCGTTTGTGTACGACTGGCACCTCACCAAGTACG
GGTTGCGGCGACTGGCAGAGAAGCACCTTGCGCGCATGGTCCGCACGTTG
CACAAGTACGAAGACAGCGATGGCACTGTGAGAGCGTTCTGCCGCTTCCT
TGGCATCAACTGCAAACAGGTCCCACTCGATGACCTGAACGTGTACTTGG
ACGTGTACATGCTG
back to top