mRNA_M-pyrifera_M_contig107090.1526.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107090.1526.1
Unique NamemRNA_M-pyrifera_M_contig107090.1526.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Match: A0A2E9LE32_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E9LE32_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 3.940e-21
Identity = 55/188 (29.26%), Postives = 103/188 (54.79%), Query Frame = 1
Query:    1 IEGHTIEWQDTRVPSAWLEESPSGAAELSFESLVVNGDPVEIAEHRYTVLLANFDEDGEFLSQCGGVVIAPGWVMTAAHCTLYQPTG---TYYASPAFISVIHGLADLNDVPDDSDDHIRFTEAVYRHPGYNPGSPFDDIALLELHEPLEPANADPIPLFDL-DGPTDGSAAYLTGWGATGTFNDPSA 552
            I  H++E+++   P   +  S +G+ +     L+V G  V+I +H Y V +  +D  G+ +  CGG+V+ P  ++TAAHC  YQP     +YY     + V  G ++LN++   +   I  + ++++HP +N  +  +DI ++ L   L+ +    +P++DL D P +  + ++TGWG T +  + SA
Sbjct:  171 ITSHSVEYRELDSPVT-ISSSKNGS-QGGINPLIVGGSNVDIRDHSYQVWVMIYDVFGDGIKSCGGIVLTPYHILTAAHCLEYQPYSGLPSYYQDVGSVCVAGGTSNLNNIDSAT---ISCSSSIHKHPSWNRDTEENDIGIIRLSTRLDMSKVGTLPIYDLPDDPAENDSLFVTGWGDTSSGGNGSA 353          
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Match: A0A0F4JDL7_9ACTN (Serine protease n=2 Tax=Streptomyces TaxID=1883 RepID=A0A0F4JDL7_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 1.810e-15
Identity = 61/169 (36.09%), Postives = 89/169 (52.66%), Query Frame = 1
Query:   52 LEESPSGAAELSFESLVVNGDPVEIAEHRYTVLLANFDE-----DGEFLSQCGGVVIAPGWVMTAAHCTLYQPTGTYYASPAFISVIHGLADLNDVPDDSDDHIRFTEAVYRHPGYNPGSPFDDIALLELHEPLEPANADPIPLFDLDGPTDGSAAYLTGWGATGTFND 543
            L ++P+ AA    +S+V+ G PV++A+  + V LA+ D      DG+F   CGGV++AP  V+TAAHC   Q  G    S A   VI G  +L   PD  +  +R   A   +P Y+PG+   D+A+LEL E +   +  P+      G   G+ A + GWG T  F D
Sbjct:   24 LAQAPTAAA----DSVVIGGQPVKVADSPWVVALASRDRFGGIRDGQF---CGGVLVAPTTVVTAAHCLGRQVLGGPVDSVADFRVITGRTELR-APDGREIAVR---AARVNPAYDPGTNAGDLAVLELAEAVPADHVLPMAGDGHPGYEAGTGAAVYGWGDTSGFGD 181          
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Match: A0A3R9WNS4_9ACTN (Serine protease n=1 Tax=Streptomyces sp. WAC06614 TaxID=2487416 RepID=A0A3R9WNS4_9ACTN)

HSP 1 Score: 79.7 bits (195), Expect = 2.000e-14
Identity = 56/169 (33.14%), Postives = 88/169 (52.07%), Query Frame = 1
Query:   43 SAWLEESPSGAAELSFESLVVNGDPVEIAEHRYTVLLANFDEDGEFLSQ--CGGVVIAPGWVMTAAHCTLYQPTGTYYASPAFISVIHGLADLNDVPDDSDDHIRFTEAVYRHPGYNPGSPFDDIALLELHEPLEPANADPIPLFDLDGPTDGSAAYLTGWGATGTFND 543
            +A L ++P  AA    +S+V+ G PV +A+  + V L++ D  G   +   CGGV++AP  V+TAAHC   Q  G   +S A   VI G  +L D  +  +  +R   A   +PGY+  +   D+A+LEL E +  ++  P+   +      G+ A + GWG T  F D
Sbjct:   21 AAPLVQAPHAAA----DSIVIGGTPVSVADSPWVVALSSRDRFGGTRAGQFCGGVIVAPTRVVTAAHCLSRQVLGGPVSSVADFRVITGRTELRDEDEGREIAVR---AARVNPGYDASTNAGDLAVLELAEAVPASSVLPLAAHEDPAYAPGTRATVYGWGDTSGFGD 182          
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Match: UPI0010312935 (serine protease n=2 Tax=Streptomyces TaxID=1883 RepID=UPI0010312935)

HSP 1 Score: 77.8 bits (190), Expect = 6.160e-14
Identity = 55/136 (40.44%), Postives = 69/136 (50.74%), Query Frame = 1
Query:   37 VPSAWLEESPSGAAELSFESLVVNGDPVEIAEHRYTVLLANFDEDGEFLSQ--CGGVVIAPGWVMTAAHCTLYQPTGTYYASPAFISVIHGLADLNDVPDDSDDHIRFTEAVYRHPGYNPGSPFDDIALLELHEPL 438
            +P A L  SP+ A EL     VV G PV   +H +TV L++ D  GE  S   CGGVV+ PG V TAAHC      G     PA ++VI G ADL    D   + +    A + HP Y+P     D+ALL L   L
Sbjct:   16 LPLALLPSSPASAGEL-----VVGGHPVRAEDHPWTVALSSRDRYGEDRSGQFCGGVVVEPGLVATAAHCLGSGEEGADDGVPADLAVIAGRADLGAGGDAVGEELAVASA-WIHPDYDPNRQTHDLALLTLEGEL 145          
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Match: A0A2K8PEI6_STRLA (Trypsin n=1 Tax=Streptomyces lavendulae subsp. lavendulae TaxID=58340 RepID=A0A2K8PEI6_STRLA)

HSP 1 Score: 74.7 bits (182), Expect = 8.920e-13
Identity = 60/170 (35.29%), Postives = 83/170 (48.82%), Query Frame = 1
Query:   52 LEESPSGAAELSFESLVVNGDPVEIAEHRYTVLLANFDE-----DGEFLSQCGGVVIAPGWVMTAAHCTLYQPTGTYYASPAFISVIHGLADLNDVPDDSDDHIRFTEAVYR-HPGYNPGSPFDDIALLELHEPLEPANADPIPLFDLDGPTDGSAAYLTGWGATGTFND 543
            L ++P  AA    +S+V+ G PV +A+  + V LA+ D      DG+F   CGGVV+AP  V+TAAHC   Q  G    S A   VI G  +L      +D+         R +P Y+PGS   D+A+LEL E +      P+          G+ A + GWG T  F D
Sbjct:   24 LAQAPGVAA----DSVVIGGKPVNVADSPWVVALASRDRFGGTRDGQF---CGGVVVAPTTVVTAAHCLGRQVLGGPVESVADFRVITGRTELR-----ADEGREIAVRAARVNPAYDPGSNAGDLAVLELAEAVPAQYVLPMAGDGHPAYAAGTDAAVYGWGDTSGFGD 181          
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Match: A0A0F7FZ98_9ACTN (Secreted trypsin-like serine protease n=3 Tax=Streptomyces TaxID=1883 RepID=A0A0F7FZ98_9ACTN)

HSP 1 Score: 73.9 bits (180), Expect = 1.390e-12
Identity = 52/153 (33.99%), Postives = 77/153 (50.33%), Query Frame = 1
Query:   76 AELSFESLVVNGDPVEIAEHRYTVLLANFDEDGEFLSQ--CGGVVIAPGWVMTAAHCTLYQPTGTYYASPAFISVIHGLADLNDVPDDSDDHIRFTEAVYRHPGYNPGSPFDDIALLELHEPLEPANADPIPLFDLDGPTDGSAAYLTGWGAT 528
            A  + +  +V G PV +++H + V LA+ D  GE  S   CGG ++ P  V+TAAHC   +  G     P  ++VI G  DL     D+   +   E V  +PGY+P +   D+A+L L E L   +A  +      G T G+ A + GWG T
Sbjct:   15 AHAAADEHIVGGSPVSVSDHPWVVALASRDRYGEARSGQFCGGALVGPDTVVTAAHCVSPEVLGRNADDPGDLTVIAGRDDLGR---DAGREVAVRE-VRINPGYDPATNAGDLAVLTLTESLPADDAIRVAGAGHPGYTPGTEALVHGWGDT 163          
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Match: UPI001FB2A56A (trypsin-like serine protease n=1 Tax=Streptomyces sp. APSN-46.1 TaxID=2929049 RepID=UPI001FB2A56A)

HSP 1 Score: 73.9 bits (180), Expect = 2.080e-12
Identity = 59/173 (34.10%), Postives = 85/173 (49.13%), Query Frame = 1
Query:   43 SAWLEESPSGAAELSFESLVVNGDPVEIAEHRYTVLLANFDE-----DGEFLSQCGGVVIAPGWVMTAAHCTLYQPTGTYYASPAFISVIHGLADLNDVPDDSDDHIRFTEAVYR-HPGYNPGSPFDDIALLELHEPLEPANADPIPLFDLDGPTDGSAAYLTGWGATGTFND 543
            +A L ++P  AA    +S+V+ G PV++A+  + V LA+ D       G+F   CGGV++AP  V+TAAHC   +  G    S     VI G  +L      +DD         R +PGY+P S   D+A+LEL E +      P+      G   G+ A + GWG T  F D
Sbjct:   21 TAPLTQAPKAAA----DSVVIGGKPVKVADSPWVVALASRDRFGGTRGGQF---CGGVIVAPTKVLTAAHCLGREVLGGPVESLPDFRVITGRTELR-----ADDGREIAVRGARVNPGYDPASNAGDLAVLELEEAVPAHYVLPVAEGGDPGYQAGTEAAVYGWGDTSGFGD 181          
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Match: A0A2Z4UY39_9ACTN (Serine protease n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A2Z4UY39_9ACTN)

HSP 1 Score: 73.6 bits (179), Expect = 3.220e-12
Identity = 59/174 (33.91%), Postives = 87/174 (50.00%), Query Frame = 1
Query:   43 SAWLEESPSGAAELSFESLVVNGDPVEIAEHRYTVLLANFDE-----DGEFLSQCGGVVIAPGWVMTAAHCTLYQPTGTYYASPAFISVIHGLADLNDVPDDSDDHIRFTEAVYRHPGYNPGSPFDDIALLELHEPLEPANADPIPLFDLDGPTDGSA--AYLTGWGATGTFND 543
            +A L ++P  AA    +S+V+ G PV++A+  + V LA+ D       G+F   CGGV++AP  V+TAAHC   Q  G    S     VI G  +L    +  +  +R       +PGY+P S   D+A+LEL E + P     +P+     P  G+   A + GWG T  F D
Sbjct:   21 AAPLSQAPRAAA----DSVVIGGKPVKVADAPWVVALASRDRFGGTRGGQF---CGGVLVAPTKVLTAAHCLARQVLGGPVDSVRDFRVITGRTELR-AAEGREIAVRSARV---NPGYDPASNAGDLAVLELDEAVPPQYV--LPMAGAGHPAYGAGTDAAVYGWGDTSGFGD 181          
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Match: A0A2E8LIQ1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LIQ1_9ACTN)

HSP 1 Score: 74.3 bits (181), Expect = 3.300e-12
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   97 LVVNGDPVEIAEHRYTVLLANFDEDGEFLSQ-CGGVVIAPGWVMTAAHCTLYQPTGTYYASPAFISVIHGLADLNDVPDDSDDHIRFTEAVYRHPGYNPGSPFDDIALLELHEPLEPANADPIPLFDL-DGPTDGSAAYLTGWGAT 528
            +++ GD V IA+H +TV +        F +Q CGG ++ P WV+TAAHC   +       + A I V  G+ +L+ V   +D H     +++ HP Y+      D+ALL L  P+  A+ADPIP       P  G+   + GWG+T
Sbjct:    1 MIIGGDTVSIADHPHTVAVLAASVSSGFNAQYCGGTLVTPRWVVTAAHCVDDK-------AAAEIDVAVGITNLDAVTA-ADRHA--VASIHIHPDYDSELVLHDLALLYLAAPVTAADADPIPWQSAATAPVSGTPISVAGWGST 136          
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Match: A0A2E6UMW1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6UMW1_9ACTN)

HSP 1 Score: 74.3 bits (181), Expect = 3.600e-12
Identity = 51/146 (34.93%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   97 LVVNGDPVEIAEHRYTVLLANFDEDGEFLSQ-CGGVVIAPGWVMTAAHCTLYQPTGTYYASPAFISVIHGLADLNDVPDDSDDHIRFTEAVYRHPGYNPGSPFDDIALLELHEPLEPANADPIPLFDL-DGPTDGSAAYLTGWGAT 528
            ++V GD V IA+H +TV +        F +Q CGG ++ P WV+TAAHC   +       + A I V  G+ +L+ V   +D H     +++ HP Y+      D+ALL L  P+  A+ADPIP       P  G+   + GWG+T
Sbjct:  518 MIVGGDTVSIADHPHTVAVLVASVSSGFNAQYCGGTLVTPRWVVTAAHCVDDK-------AAAEIDVAVGITNLDAVTA-ADRHA--VASIHIHPDYDSELVLHDLALLYLAAPVTAADADPIPWQSAATAPVSGTPISVAGWGST 653          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107090.1526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E9LE32_9ACTN3.940e-2129.26Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A0F4JDL7_9ACTN1.810e-1536.09Serine protease n=2 Tax=Streptomyces TaxID=1883 Re... [more]
A0A3R9WNS4_9ACTN2.000e-1433.14Serine protease n=1 Tax=Streptomyces sp. WAC06614 ... [more]
UPI00103129356.160e-1440.44serine protease n=2 Tax=Streptomyces TaxID=1883 Re... [more]
A0A2K8PEI6_STRLA8.920e-1335.29Trypsin n=1 Tax=Streptomyces lavendulae subsp. lav... [more]
A0A0F7FZ98_9ACTN1.390e-1233.99Secreted trypsin-like serine protease n=3 Tax=Stre... [more]
UPI001FB2A56A2.080e-1234.10trypsin-like serine protease n=1 Tax=Streptomyces ... [more]
A0A2Z4UY39_9ACTN3.220e-1233.91Serine protease n=2 Tax=unclassified Streptomyces ... [more]
A0A2E8LIQ1_9ACTN3.300e-1234.25Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2E6UMW1_9ACTN3.600e-1234.93Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107090contigM-pyrifera_M_contig107090:69..620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.6
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog1463845.JOIG01000004_gene3991
KEGG koko:K01312
KEGG Pathwayko04080,ko04972,ko04974,ko05164,map04080,map04972,map04974,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM peptidase S1 and S6, chymotrypsin Hap
EggNOG OGs2GN18@201174,COG5640@1,COG5640@2
EC3.4.21.4
COG Functional cat.O
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.267167-CDS-M-pyrifera_M_contig107090:68..6201622815581.267167-CDS-M-pyrifera_M_contig107090:68..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107090 69..620 +
1692277473.5125751-CDS-M-pyrifera_M_contig107090:68..6201692277473.5125751-CDS-M-pyrifera_M_contig107090:68..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107090 69..620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107090.1526.1prot_M-pyrifera_M_contig107090.1526.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107090 69..620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107090.1526.1

>prot_M-pyrifera_M_contig107090.1526.1 ID=prot_M-pyrifera_M_contig107090.1526.1|Name=mRNA_M-pyrifera_M_contig107090.1526.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
IEGHTIEWQDTRVPSAWLEESPSGAAELSFESLVVNGDPVEIAEHRYTVL
LANFDEDGEFLSQCGGVVIAPGWVMTAAHCTLYQPTGTYYASPAFISVIH
GLADLNDVPDDSDDHIRFTEAVYRHPGYNPGSPFDDIALLELHEPLEPAN
ADPIPLFDLDGPTDGSAAYLTGWGATGTFNDPSA
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mRNA from alignment at M-pyrifera_M_contig107090:69..620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107090.1526.1 ID=mRNA_M-pyrifera_M_contig107090.1526.1|Name=mRNA_M-pyrifera_M_contig107090.1526.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig107090:69..620+ (Macrocystis pyrifera P11B4 male)
ATCGAGGGACACACCATCGAGTGGCAGGACACCCGGGTTCCTTCGGCATG GCTCGAGGAGTCACCCAGCGGCGCAGCCGAACTCTCCTTCGAATCGCTGG TGGTCAACGGCGACCCGGTGGAGATCGCCGAGCACCGCTACACCGTCCTT CTGGCCAACTTCGACGAGGACGGCGAGTTCCTCAGTCAGTGCGGCGGTGT CGTCATCGCTCCTGGATGGGTGATGACTGCAGCGCACTGCACGCTCTATC AGCCGACCGGCACCTACTACGCGTCGCCCGCGTTCATCTCGGTCATCCAC GGGCTCGCCGACCTGAACGACGTTCCCGACGACAGCGATGACCATATTCG CTTCACCGAAGCGGTCTATCGCCACCCGGGTTACAACCCGGGTTCGCCGT TCGACGACATCGCTCTGCTGGAGCTCCACGAGCCGCTCGAACCGGCCAAT GCCGATCCGATCCCGCTCTTCGATCTCGACGGACCGACCGATGGCTCGGC CGCCTACCTCACCGGCTGGGGTGCCACCGGAACGTTCAACGACCCGAGCG CC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107090:69..620+

>mRNA_M-pyrifera_M_contig107090.1526.1 ID=mRNA_M-pyrifera_M_contig107090.1526.1|Name=mRNA_M-pyrifera_M_contig107090.1526.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig107090:69..620+ (Macrocystis pyrifera P11B4 male)
ATCGAGGGACACACCATCGAGTGGCAGGACACCCGGGTTCCTTCGGCATG
GCTCGAGGAGTCACCCAGCGGCGCAGCCGAACTCTCCTTCGAATCGCTGG
TGGTCAACGGCGACCCGGTGGAGATCGCCGAGCACCGCTACACCGTCCTT
CTGGCCAACTTCGACGAGGACGGCGAGTTCCTCAGTCAGTGCGGCGGTGT
CGTCATCGCTCCTGGATGGGTGATGACTGCAGCGCACTGCACGCTCTATC
AGCCGACCGGCACCTACTACGCGTCGCCCGCGTTCATCTCGGTCATCCAC
GGGCTCGCCGACCTGAACGACGTTCCCGACGACAGCGATGACCATATTCG
CTTCACCGAAGCGGTCTATCGCCACCCGGGTTACAACCCGGGTTCGCCGT
TCGACGACATCGCTCTGCTGGAGCTCCACGAGCCGCTCGAACCGGCCAAT
GCCGATCCGATCCCGCTCTTCGATCTCGACGGACCGACCGATGGCTCGGC
CGCCTACCTCACCGGCTGGGGTGCCACCGGAACGTTCAACGACCCGAGCG
CCATCGAGGGACACACCATCGAGTGGCAGGACACCCGGGTTCCTTCGGCA
TGGCTCGAGGAGTCACCCAGCGGCGCAGCCGAACTCTCCTTCGAATCGCT
GGTGGTCAACGGCGACCCGGTGGAGATCGCCGAGCACCGCTACACCGTCC
TTCTGGCCAACTTCGACGAGGACGGCGAGTTCCTCAGTCAGTGCGGCGGT
GTCGTCATCGCTCCTGGATGGGTGATGACTGCAGCGCACTGCACGCTCTA
TCAGCCGACCGGCACCTACTACGCGTCGCCCGCGTTCATCTCGGTCATCC
ACGGGCTCGCCGACCTGAACGACGTTCCCGACGACAGCGATGACCATATT
CGCTTCACCGAAGCGGTCTATCGCCACCCGGGTTACAACCCGGGTTCGCC
GTTCGACGACATCGCTCTGCTGGAGCTCCACGAGCCGCTCGAACCGGCCA
ATGCCGATCCGATCCCGCTCTTCGATCTCGACGGACCGACCGATGGCTCG
GCCGCCTACCTCACCGGCTGGGGTGCCACCGGAACGTTCAACGACCCGAG
CGCC
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