mRNA_M-pyrifera_M_contig107075.1518.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107075.1518.1
Unique NamemRNA_M-pyrifera_M_contig107075.1518.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Match: A0A836CGS0_9STRA (Anti-viral guanylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.350e-17
Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 PFQHLDFLVRDYQYFDYEGVSADW----DGFLRRCGSDLGKRMGSEVKELQETREAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVVRFRLRPKRIFGQCVSARALEVY 366
            PFQ L+FLVRD+Q FD E   +D     D +L     D       +VK+LQETR+ +  C++++SC  L  PG  V  K + G + +++  +R L++AYV  V    L PKRI G+ ++A  L  Y
Sbjct:  234 PFQLLEFLVRDWQNFDDEDSISDMQKSMDNYLLEVIRDR------DVKDLQETRDQIMACFEKVSCFGLCHPGMDVVKKNYDGSIDKIDATFRALLDAYVRRVFGNELEPKRIHGRYLTAPELSTY 353          
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Match: A0A485LEL6_9STRA (Aste57867_20282 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEL6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.560e-17
Identity = 45/126 (35.71%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 PFQHLDFLVRDYQYFDYEGVSADWDGFLRRCGSDLGKRMGSEVKELQETREAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVV-RFRLRPKRIFGQCVSARALEVYFKT 375
            PFQHLDFLVRD+Q F      AD    ++    ++      + ++L +TRE +  C++ + C+ L  PG  VT + F G + E++  + EL+ AY++++     L PKRI G  VSAR L  + K+
Sbjct:  266 PFQHLDFLVRDWQDFKRTATLADKQADMKAYAQEV--LSARKQQDLADTREQIHSCFESIRCVLLSHPGHAVTDRDFDGSIEEIDARFMELLTAYLNQLFGATTLEPKRIHGVAVSARELLTFIKS 389          
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Match: A0A6G0WWM0_9STRA (GB1/RHD3-type G domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWM0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.710e-16
Identity = 41/126 (32.54%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 PFQHLDFLVRDYQYFDYEGVSADWDGFLRRCGSDLGKRMGSEVKELQETREAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVVRFR-LRPKRIFGQCVSARALEVYFKT 375
            PFQHLDFLVRD+Q F      A+    ++   +++      + ++L +TRE +  C++ + C+ L  PG  VT + + G + E++G + EL+ AY++++   + L PK+I G  V++R L  + K+
Sbjct:  264 PFQHLDFLVRDWQDFKRTATLAEKQADMKAYAAEV--LSARKQQDLADTREQIHSCFETIRCVLLSHPGHAVTDRDYDGSIEEIDGRFMELLTAYLNQLFGPKTLEPKKIHGVTVTSRELLTFIKS 387          
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Match: A0A024U1Y5_9STRA (GB1/RHD3-type G domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1Y5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.460e-15
Identity = 42/126 (33.33%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 PFQHLDFLVRDYQYFDYEGVSADWDGFLRRCGSDLGKRMGSEVKELQETREAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVVRFR-LRPKRIFGQCVSARALEVYFKT 375
            PFQHLDFLVRD+Q F      A+    ++   S++      + ++L +TRE +  C++ + C+ L  PG  VT  ++ G + E++G + EL+ AY++ +   + L PK+I G  +++R L V+ K+
Sbjct:  283 PFQHLDFLVRDWQDFKRSATLAEKQADMQAYASEVLSTR--KQQDLADTREQIHSCFETIRCVLLSHPGHAVTDCEYDGSIDEIDGRFMELLTAYLNTLFGEKSLEPKKIHGVTITSRELLVFIKS 406          
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Match: A0A7S1D8P8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8P8_CYCTE)

HSP 1 Score: 80.9 bits (198), Expect = 1.820e-15
Identity = 44/126 (34.92%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    1 PFQHLDFLVRDYQYFDYEGVSADWDGFLRRCGSDLGKRMGS-EVKELQETREAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVVRF-RLRPKRIFGQCVSARALEVYFK 372
            PFQ ++FLVRD+Q ++ E    D++   +  G  L K +   + K+LQ+TRE +  C++++SC  L  PG  VT KKF+G ++ ++  +  L++ Y   V    +L+PK I+G+ ++A  L  Y K
Sbjct:   54 PFQQIEFLVRDWQNYEDE---EDFEQMEKEMGEYLDKAIAERDAKDLQDTREQIISCFEKISCYGLVHPGIAVTKKKFTGDIQAIDETFLLLLDRYCRRVFNVEKLQPKVIYGRELTAVELGSYIK 176          
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Match: A0A1V9ZS74_9STRA (Atlastin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZS74_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.010e-15
Identity = 42/126 (33.33%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    1 PFQHLDFLVRDYQYFDYEGVSADWDGFLRRCGSDLGKRMGSEVKELQETREAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVV-RFRLRPKRIFGQCVSARALEVYFKT 375
            PFQHLDFLVRD+Q F  +   A+    ++    ++      + ++L +TRE +  C++ +SC+ L  PG  VT + + G + E++  + EL+ +Y++ +  R  L PKRI G  V++R L  + K+
Sbjct:  354 PFQHLDFLVRDWQDFKRKATLAEKKADMKAYTQEILSTR--KQQDLADTREQIFACFETISCVLLSHPGHAVTDRDYDGSIEEIDERFMELLTSYLNHLFSRSTLEPKRIHGVAVNSRELLTFIKS 477          
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Match: A0A6A5A3Y7_9STRA (GB1/RHD3-type G domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A3Y7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.510e-15
Identity = 44/126 (34.92%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 PFQHLDFLVRDYQYFDYEGVSADWDGFLRRCGSDLGKRMGSEVKELQETREAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVVRFR-LRPKRIFGQCVSARALEVYFKT 375
            PFQHLDFLVRD+Q F      AD    ++   S++      + ++L +TRE +  C+  + C+ L  PG  VT  ++ G + E++G + EL+ +Y++ +     L PK I G  VS+R L V+ K+
Sbjct:   50 PFQHLDFLVRDWQDFKRSATLADKHADMKAYASEVLSTR--KQQDLADTREQIHSCFASIRCVLLSHPGHAVTDLEYDGSIDEIDGRFLELLTSYLNTLFGPESLEPKTIHGVAVSSRELLVFIKS 173          
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Match: A0A397DB18_9STRA (GB1/RHD3-type G domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DB18_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.170e-14
Identity = 43/126 (34.13%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 PFQHLDFLVRDYQYFDYEGVSADWDGFLRRCGSDLGKRMGSEVKELQETREAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVVRFR-LRPKRIFGQCVSARALEVYFKT 375
            PFQHLDFLVRD+Q F      AD    ++   S++      + ++L +TRE +  C+  + C+ L  PG  VT  ++ G + E++G + EL+ +Y++ +     L PK I G  V++R L V+ K+
Sbjct:  248 PFQHLDFLVRDWQDFKRSATLADKHADMKAYASEVLSTR--KQQDLADTREQIHSCFASIRCVLLSHPGHAVTDLEYDGSIDEIDGRFLELLTSYLNTLFGPESLEPKTIHGVAVTSRELLVFIKS 371          
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Match: W4FP15_9STRA (GB1/RHD3-type G domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FP15_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.280e-14
Identity = 43/126 (34.13%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 PFQHLDFLVRDYQYFDYEGVSADWDGFLRRCGSDLGKRMGSEVKELQETREAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVVRFR-LRPKRIFGQCVSARALEVYFKT 375
            PFQHLDFLVRD+Q F      AD    ++   S++      + ++L +TRE +  C+  + C+ L  PG  VT  ++ G + E++G + EL+ +Y++ +     L PK I G  V++R L V+ K+
Sbjct:  272 PFQHLDFLVRDWQDFKRSATLADKHADMKAYASEVLSTR--KQQDLADTREQIHSCFASIRCVLLSHPGHAVTDLEYDGSIDEIDGRFLELLTSYLNTLFGPESLEPKTIHGVAVTSRELLVFIKS 395          
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Match: A0A1V9YCN9_9STRA (Atlastin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCN9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.300e-13
Identity = 40/126 (31.75%), Postives = 70/126 (55.56%), Query Frame = 1
Query:    1 PFQHLDFLVRDYQYFDYEGVSADWDGFLRRCGSDLGKRMGSEVKELQETREAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVVR-FRLRPKRIFGQCVSARALEVYFKT 375
            PFQHLDFLVRD+Q F  +    +    ++    ++      + ++L +TRE +  C+  +SC+ L  PG  VT + + G + E++G + EL+ +Y++ +     L PK+I G  VS+  L  + K+
Sbjct:  277 PFQHLDFLVRDWQDFKRKATLEEKKVDMKAYTQEI--LATRKQQDLADTREQIFACFQTISCVLLSHPGHAVTDRDYDGSIEEIDGRFMELLTSYLNHLFGPAALEPKKIHGVNVSSAELLTFIKS 400          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107075.1518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGS0_9STRA1.350e-1738.10Anti-viral guanylate-binding protein n=1 Tax=Tribo... [more]
A0A485LEL6_9STRA2.560e-1735.71Aste57867_20282 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WWM0_9STRA5.710e-1632.54GB1/RHD3-type G domain-containing protein n=1 Tax=... [more]
A0A024U1Y5_9STRA1.460e-1533.33GB1/RHD3-type G domain-containing protein n=2 Tax=... [more]
A0A7S1D8P8_CYCTE1.820e-1534.92Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1V9ZS74_9STRA2.010e-1533.33Atlastin n=1 Tax=Thraustotheca clavata TaxID=74557... [more]
A0A6A5A3Y7_9STRA3.510e-1534.92GB1/RHD3-type G domain-containing protein n=1 Tax=... [more]
A0A397DB18_9STRA1.170e-1434.13GB1/RHD3-type G domain-containing protein n=6 Tax=... [more]
W4FP15_9STRA1.280e-1434.13GB1/RHD3-type G domain-containing protein n=8 Tax=... [more]
A0A1V9YCN9_9STRA5.300e-1331.75Atlastin-like protein n=1 Tax=Achlya hypogyna TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107075contigM-pyrifera_M_contig107075:247..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.9e-14
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.3829
KEGG koko:K17339
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Guanylate-binding protein, N-terminal domain
EggNOG OGs3Q7EZ@4776,KOG2037@1,KOG2037@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.9466336-CDS-M-pyrifera_M_contig107075:246..6211622815580.9466336-CDS-M-pyrifera_M_contig107075:246..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107075 247..621 +
1692277473.4058232-CDS-M-pyrifera_M_contig107075:246..6211692277473.4058232-CDS-M-pyrifera_M_contig107075:246..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107075 247..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107075.1518.1prot_M-pyrifera_M_contig107075.1518.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107075 247..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107075.1518.1

>prot_M-pyrifera_M_contig107075.1518.1 ID=prot_M-pyrifera_M_contig107075.1518.1|Name=mRNA_M-pyrifera_M_contig107075.1518.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
PFQHLDFLVRDYQYFDYEGVSADWDGFLRRCGSDLGKRMGSEVKELQETR
EAVKQCYDRLSCMHLPSPGAPVTTKKFSGQMREVNGEWRELVEAYVDEVV
RFRLRPKRIFGQCVSARALEVYFKT
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mRNA from alignment at M-pyrifera_M_contig107075:247..621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107075.1518.1 ID=mRNA_M-pyrifera_M_contig107075.1518.1|Name=mRNA_M-pyrifera_M_contig107075.1518.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig107075:247..621+ (Macrocystis pyrifera P11B4 male)
CCGTTCCAGCATTTGGATTTTTTGGTTCGGGATTACCAGTACTTTGATTA CGAGGGGGTGAGTGCAGATTGGGATGGTTTTTTGCGTCGTTGTGGTTCCG ATTTGGGCAAGCGTATGGGGAGTGAGGTGAAGGAGTTGCAGGAGACGAGG GAGGCTGTGAAGCAGTGTTATGACCGATTGAGTTGCATGCACCTCCCTTC CCCTGGTGCCCCAGTGACGACGAAAAAATTTTCTGGACAAATGCGGGAGG TGAATGGGGAGTGGAGGGAGCTTGTGGAGGCTTATGTGGACGAGGTGGTT CGGTTTCGGCTGAGACCCAAGCGAATTTTCGGTCAGTGTGTGAGTGCAAG GGCATTGGAAGTGTACTTCAAGACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107075:247..621+

>mRNA_M-pyrifera_M_contig107075.1518.1 ID=mRNA_M-pyrifera_M_contig107075.1518.1|Name=mRNA_M-pyrifera_M_contig107075.1518.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig107075:247..621+ (Macrocystis pyrifera P11B4 male)
CCGTTCCAGCATTTGGATTTTTTGGTTCGGGATTACCAGTACTTTGATTA
CGAGGGGGTGAGTGCAGATTGGGATGGTTTTTTGCGTCGTTGTGGTTCCG
ATTTGGGCAAGCGTATGGGGAGTGAGGTGAAGGAGTTGCAGGAGACGAGG
GAGGCTGTGAAGCAGTGTTATGACCGATTGAGTTGCATGCACCTCCCTTC
CCCTGGTGCCCCAGTGACGACGAAAAAATTTTCTGGACAAATGCGGGAGG
TGAATGGGGAGTGGAGGGAGCTTGTGGAGGCTTATGTGGACGAGGTGGTT
CGGTTTCGGCTGAGACCCAAGCGAATTTTCGGTCAGTGTGTGAGTGCAAG
GGCATTGGAAGTGTACTTCAAGACACCGTTCCAGCATTTGGATTTTTTGG
TTCGGGATTACCAGTACTTTGATTACGAGGGGGTGAGTGCAGATTGGGAT
GGTTTTTTGCGTCGTTGTGGTTCCGATTTGGGCAAGCGTATGGGGAGTGA
GGTGAAGGAGTTGCAGGAGACGAGGGAGGCTGTGAAGCAGTGTTATGACC
GATTGAGTTGCATGCACCTCCCTTCCCCTGGTGCCCCAGTGACGACGAAA
AAATTTTCTGGACAAATGCGGGAGGTGAATGGGGAGTGGAGGGAGCTTGT
GGAGGCTTATGTGGACGAGGTGGTTCGGTTTCGGCTGAGACCCAAGCGAA
TTTTCGGTCAGTGTGTGAGTGCAAGGGCATTGGAAGTGTACTTCAAGACA
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