mRNA_M-pyrifera_M_contig107066.1514.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107066.1514.1
Unique NamemRNA_M-pyrifera_M_contig107066.1514.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107066.1514.1 vs. uniprot
Match: A0A517VP07_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VP07_9PLAN)

HSP 1 Score: 178 bits (451), Expect = 1.940e-53
Identity = 87/114 (76.32%), Postives = 99/114 (86.84%), Query Frame = 1
Query:    1 SLTIENKLNTERFGNNLTRYDIPMVERIITLGTDVPWSSDNTDLVDQDLDGAAGTLVFTHGRTSGDVLTFDMAAIQYANVDPTLTGKDVIDYPLQGMVRSSGTTKPLIITNAHS 342
            SLTIEN+LNTE FGNNLTRYDIP+V R+ITL TD PW +DNTDL+ QDL+GAAGTLVFT+     DVLTF MAAIQYANV PTL GKDV++ PL+GMV+SSGTTKPLIITNAH+
Sbjct:  185 SLTIENQLNTELFGNNLTRYDIPLVNRVITLATDHPWDTDNTDLIKQDLNGAAGTLVFTNSTVVTDVLTFAMAAIQYANVSPTLPGKDVVNLPLEGMVKSSGTTKPLIITNAHA 298          
BLAST of mRNA_M-pyrifera_M_contig107066.1514.1 vs. uniprot
Match: A0A517VMV7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VMV7_9PLAN)

HSP 1 Score: 162 bits (409), Expect = 4.120e-47
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 SLTIENKLNTERFGNNLTRYDIPMVERIITLGTDVPWSSDNTDLVDQDLDGAAGTLVFTHGRTSGDVLTFDMAAIQYANVDPTLTGKDVIDYPLQGMVRSSGTTKPLIITNAHSA 345
            +LTI+N+LNTE F N LTRYDIPMV+R+I+L TD PW +DNTDLV Q LDGAA T VFT+   SGDVLTF MAA+QY N  PT  G+DV   PL+GMVRSSGTTKPLIITNAHSA
Sbjct:  185 NLTIQNQLNTELFENGLTRYDIPMVDRMISLATDHPWDTDNTDLVAQALDGAAATAVFTNDAASGDVLTFAMAAVQYPNKTPTNQGRDVTRLPLEGMVRSSGTTKPLIITNAHSA 299          
BLAST of mRNA_M-pyrifera_M_contig107066.1514.1 vs. uniprot
Match: A0A518AFP3_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AFP3_9PLAN)

HSP 1 Score: 138 bits (348), Expect = 5.810e-38
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    1 SLTIENKLNTERFGNNLTRYDIPMVERIITLGTDVPWSSDNTDLVDQDLDGAAGTLVFTHGRTSGDVLTFDMAAIQYANVDPTLTGKDVIDYPLQGMVRSSGTTKPLIITNAHS 342
            +LTI N L+TER+ N LTRY IP+ +R ITL T+ PWS+D+TDL  Q LDG+AGT VFT+   SGDVLTF MAA+QY N   T  G+  + YPL+G VRSSG+T PLIITNAHS
Sbjct:  186 NLTINNVLDTERYENALTRYTIPITDRTITLATNHPWSTDHTDLEKQALDGSAGTAVFTNAAVSGDVLTFAMAAVQYKNRTVTSQGQPTMRYPLEGDVRSSGSTAPLIITNAHS 299          
BLAST of mRNA_M-pyrifera_M_contig107066.1514.1 vs. uniprot
Match: A0A6I6ACW4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ACW4_9PLAN)

HSP 1 Score: 131 bits (329), Expect = 3.820e-35
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 1
Query:    1 SLTIENKLNTERFGNNLTRYDIPMVERIITLGTDVPWSSDNTDLVDQDLDGAAGTLVFTHGRTSGDVLTFDMAAIQYANVDPTLTGKDVIDYPLQGMVRSSGTTKPLIITNAHS 342
            SLTIEN+L+TERF NNLTR D+P+++R+ITL T+ PWS+DN DL+ QDL GA G+LVFT+   + ++LTF    IQY +  P  T   V   PL+GMVR +G+T  LI+TNAH+
Sbjct:  184 SLTIENQLDTERFENNLTRVDLPLLDRVITLSTNHPWSTDNLDLIKQDLTGAGGSLVFTNTEITSNILTFTFGTIQYPSKTPGTTKAQVTRLPLEGMVRKAGSTPSLIVTNAHA 297          
BLAST of mRNA_M-pyrifera_M_contig107066.1514.1 vs. uniprot
Match: UPI0011894C90 (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI0011894C90)

HSP 1 Score: 122 bits (305), Expect = 7.250e-33
Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    1 SLTIENKLNTERFGNNLTRYDIPMVERIITLGTDVPWSSDNTDLVDQDLDGAAGTLVFTHGRTSGDVLTFDMAAIQYANVDPTLTGKDVIDYPLQGMVRSSGTTKPLIITNAHSA 345
            SL IEN+L+TERF N+LTR DIP+++RIITLGT+ PWS+ N DL+ QDL GA G+LV T+  T  D LTF   AIQY    P  T   V   PL+GMVR +G+T  L+ITNA  A
Sbjct:   63 SLVIENQLDTERFENSLTRVDIPLLDRIITLGTNHPWSTANLDLIKQDLAGAGGSLVLTNAETD-DTLTFTFGAIQYPTRTPGTTKAQVTRLPLEGMVRKAGSTASLVITNAAGA 176          
BLAST of mRNA_M-pyrifera_M_contig107066.1514.1 vs. uniprot
Match: A0A517RAZ6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RAZ6_9PLAN)

HSP 1 Score: 125 bits (313), Expect = 9.450e-33
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 SLTIENKLNTERFGNNLTRYDIPMVERIITLGTDVPWSSDNTDLVDQDLDGAAGTLVFTHGRTSGDVLTFDMAAIQYANVDPTLTGKDVIDYPLQGMVRSSGTTKPLIITNAH 339
            SLTIEN+L+TERF N+LTR DIP+++R+I+L T+ PWSSDN DL+ QDL GA G+LVFT+   + D+LTF +  +QY    P          PL+GMVR  G+T  L++TNAH
Sbjct:  185 SLTIENQLDTERFENSLTRIDIPLLDRVISLSTNHPWSSDNIDLIKQDLAGAGGSLVFTNTEVATDILTFTLGTVQYPTRTPGTAKAQTTRLPLEGMVRKVGSTASLVVTNAH 297          
BLAST of mRNA_M-pyrifera_M_contig107066.1514.1 vs. uniprot
Match: A6C3W0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris DSM 8797 TaxID=344747 RepID=A6C3W0_9PLAN)

HSP 1 Score: 121 bits (304), Expect = 2.020e-31
Identity = 64/115 (55.65%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    1 SLTIENKLNTERFGNNLTRYDIPMVERIITLGTDVPWSSDNTDLVDQDLDGAAGTLVFTHGRTSGDVLTFDMAAIQYANVDPTLTGKDVIDYPLQGMVRSSGTTKPLIITNAHSA 345
            SL IEN+L+TERF N+LTR DIP+++RI+TLGT+ PWS+ N DL+ QDL GA G+LV T+  T  D LTF   AIQY    P  T   V   PL+GMVR +G+T  L+ITNA  A
Sbjct:  184 SLVIENQLDTERFENSLTRVDIPLLDRIVTLGTNHPWSTANLDLIKQDLAGAGGSLVLTNAETD-DTLTFTFGAIQYPTRTPGTTKAQVTRLPLEGMVRKAGSTASLVITNAAGA 297          
BLAST of mRNA_M-pyrifera_M_contig107066.1514.1 vs. uniprot
Match: A0A2E2BXY2_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BXY2_9PLAN)

HSP 1 Score: 94.7 bits (234), Expect = 3.760e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 SLTIENKLNTERFGNNLTRYDIPMVERIITLGTDVPWSSDNTDLVDQDLDGAAGTLVFTHGRTSGDVLTFDMAAIQY 231
            SL IEN+L+TERF N LTR DIP+++RIITLGT+ PWS+DN DL+ QDL GA G+LV T+   S D LTF   AIQY
Sbjct:  184 SLVIENQLDTERFENTLTRVDIPLLDRIITLGTNHPWSTDNLDLIKQDLAGAGGSLVLTNTE-SDDALTFTFGAIQY 259          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107066.1514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A517VP07_9PLAN1.940e-5376.32Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A517VMV7_9PLAN4.120e-4771.30Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A518AFP3_9PLAN5.810e-3862.28Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A6I6ACW4_9PLAN3.820e-3555.26Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
UPI0011894C907.250e-3356.52hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
A0A517RAZ6_9PLAN9.450e-3353.10Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A6C3W0_9PLAN2.020e-3155.65Uncharacterized protein n=1 Tax=Gimesia maris DSM ... [more]
A0A2E2BXY2_9PLAN3.760e-2163.64Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107066contigM-pyrifera_M_contig107066:275..622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score123.6
Seed ortholog evalue5.9e-26
Seed eggNOG ortholog344747.PM8797T_10879
Hectar predicted targeting categoryother localisation
EggNOG OGs2C1HV@1,2J1G5@203682,33FEF@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.76208-CDS-M-pyrifera_M_contig107066:274..6221622815580.76208-CDS-M-pyrifera_M_contig107066:274..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107066 275..622 -
1692277473.329675-CDS-M-pyrifera_M_contig107066:274..6221692277473.329675-CDS-M-pyrifera_M_contig107066:274..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107066 275..622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107066.1514.1prot_M-pyrifera_M_contig107066.1514.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107066 275..622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107066.1514.1

>prot_M-pyrifera_M_contig107066.1514.1 ID=prot_M-pyrifera_M_contig107066.1514.1|Name=mRNA_M-pyrifera_M_contig107066.1514.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
SLTIENKLNTERFGNNLTRYDIPMVERIITLGTDVPWSSDNTDLVDQDLD
GAAGTLVFTHGRTSGDVLTFDMAAIQYANVDPTLTGKDVIDYPLQGMVRS
SGTTKPLIITNAHSA*
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mRNA from alignment at M-pyrifera_M_contig107066:275..622-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107066.1514.1 ID=mRNA_M-pyrifera_M_contig107066.1514.1|Name=mRNA_M-pyrifera_M_contig107066.1514.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig107066:275..622- (Macrocystis pyrifera P11B4 male)
AGTCTCACGATTGAGAACAAGCTGAATACAGAACGGTTTGGCAACAACTT GACCAGGTACGACATCCCGATGGTCGAACGGATTATCACGCTGGGCACTG ATGTGCCGTGGAGCTCAGACAATACCGACCTGGTGGATCAGGATCTCGAC GGCGCAGCCGGCACTCTGGTCTTCACTCACGGGCGAACTTCCGGGGATGT GCTGACATTCGACATGGCGGCGATTCAGTACGCGAATGTCGACCCGACGC TGACCGGAAAAGATGTGATCGATTATCCTCTGCAGGGGATGGTCCGCAGC TCCGGCACGACAAAGCCGTTGATTATCACCAACGCGCATTCGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107066:275..622-

>mRNA_M-pyrifera_M_contig107066.1514.1 ID=mRNA_M-pyrifera_M_contig107066.1514.1|Name=mRNA_M-pyrifera_M_contig107066.1514.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig107066:275..622- (Macrocystis pyrifera P11B4 male)
AGTCTCACGATTGAGAACAAGCTGAATACAGAACGGTTTGGCAACAACTT
GACCAGGTACGACATCCCGATGGTCGAACGGATTATCACGCTGGGCACTG
ATGTGCCGTGGAGCTCAGACAATACCGACCTGGTGGATCAGGATCTCGAC
GGCGCAGCCGGCACTCTGGTCTTCACTCACGGGCGAACTTCCGGGGATGT
GCTGACATTCGACATGGCGGCGATTCAGTACGCGAATGTCGACCCGACGC
TGACCGGAAAAGATGTGATCGATTATCCTCTGCAGGGGATGGTCCGCAGC
TCCGGCACGACAAAGCCGTTGATTATCACCAACGCGCATTCGGCCTGAAG
TCTCACGATTGAGAACAAGCTGAATACAGAACGGTTTGGCAACAACTTGA
CCAGGTACGACATCCCGATGGTCGAACGGATTATCACGCTGGGCACTGAT
GTGCCGTGGAGCTCAGACAATACCGACCTGGTGGATCAGGATCTCGACGG
CGCAGCCGGCACTCTGGTCTTCACTCACGGGCGAACTTCCGGGGATGTGC
TGACATTCGACATGGCGGCGATTCAGTACGCGAATGTCGACCCGACGCTG
ACCGGAAAAGATGTGATCGATTATCCTCTGCAGGGGATGGTCCGCAGCTC
CGGCACGACAAAGCCGTTGATTATCACCAACGCGCATTCGGCCTGA
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