mRNA_M-pyrifera_M_contig107054.1509.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107054.1509.1
Unique NamemRNA_M-pyrifera_M_contig107054.1509.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107054.1509.1 vs. uniprot
Match: A0A7V8V3B0_9BACT (EF-hand domain-containing protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V3B0_9BACT)

HSP 1 Score: 268 bits (686), Expect = 2.180e-81
Identity = 146/204 (71.57%), Postives = 147/204 (72.06%), Query Frame = 1 
Query:    1 LETLESRWPLSVSPIYADVSIDDSYVSYESGIVLDDVLYFSGETRHDQIGQEFMKYDPSANGGLGQASPIADINLGSGDGSNTSNFT---------------------------------------------------------LSGKLYFSGDDGEHGYELWELDLTSEGGIPSVRMLADFFVGTSGSVPMMLTAHNSKLYYM 441
            LETLESRWPLSVSPIYADVSIDDSYVSYESGIVLDDVLYFSGETRHDQIGQEFMKYDPSANGGLGQASPIADINLGSGDGSNTSNF+                                                         LSGKLYFSGDDGEHGYELWELDLTSEGGIPSVRMLADFFVGTSGSVPMMLTAHNSKLYYM
Sbjct:   27 LETLESRWPLSVSPIYADVSIDDSYVSYESGIVLDDVLYFSGETRHDQIGQEFMKYDPSANGGLGQASPIADINLGSGDGSNTSNFSSNPSNFVTMNGKVYFTAETFDSWIDVYEYDPAANEGAGQLRRVYDLPTTFTFDEMEALSGKLYFSGDDGEHGYELWELDLTSEGGIPSVRMLADFFVGTSGSVPMMLTAHNSKLYYM 230
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107054.1509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7V8V3B0_9BACT2.180e-8171.57EF-hand domain-containing protein n=1 Tax=Bremerel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107054contigM-pyrifera_M_contig107054:10..621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.7
Seed ortholog evalue4.1e-08
Seed eggNOG ortholog118161.KB235922_gene1926
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium- and calmodulin-responsive adenylate cyclase activity
EggNOG OGs1GP04@1117,3VMQ4@52604,COG1520@1,COG1520@2,COG2931@1,COG2931@2
COG Functional cat.Q
Best tax levelPleurocapsales
Best eggNOG OGNA|NA|NA
Exons2
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.524611-CDS-M-pyrifera_M_contig107054:9..1911622815580.524611-CDS-M-pyrifera_M_contig107054:9..191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107054 10..191 -
1692277473.2674398-CDS-M-pyrifera_M_contig107054:9..1911692277473.2674398-CDS-M-pyrifera_M_contig107054:9..191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107054 10..191 -
1622815580.5372124-CDS-M-pyrifera_M_contig107054:362..6211622815580.5372124-CDS-M-pyrifera_M_contig107054:362..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107054 363..621 -
1692277473.2763119-CDS-M-pyrifera_M_contig107054:362..6211692277473.2763119-CDS-M-pyrifera_M_contig107054:362..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107054 363..621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107054.1509.1prot_M-pyrifera_M_contig107054.1509.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107054 10..621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107054.1509.1

>prot_M-pyrifera_M_contig107054.1509.1 ID=prot_M-pyrifera_M_contig107054.1509.1|Name=mRNA_M-pyrifera_M_contig107054.1509.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
LETLESRWPLSVSPIYADVSIDDSYVSYESGIVLDDVLYFSGETRHDQIG
QEFMKYDPSANGGLGQASPIADINLGSGDGSNTSNFTLSGKLYFSGDDGE
HGYELWELDLTSEGGIPSVRMLADFFVGTSGSVPMMLTAHNSKLYYM
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mRNA from alignment at M-pyrifera_M_contig107054:10..621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107054.1509.1 ID=mRNA_M-pyrifera_M_contig107054.1509.1|Name=mRNA_M-pyrifera_M_contig107054.1509.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig107054:10..621- (Macrocystis pyrifera P11B4 male)
CTGGAGACATTGGAATCGCGATGGCCCCTCTCGGTGAGTCCGATCTACGC
TGACGTTTCGATCGATGACTCCTATGTTTCGTACGAATCTGGAATCGTTC
TCGACGATGTCCTGTATTTTTCAGGCGAGACGCGACACGACCAAATTGGG
CAGGAGTTCATGAAATACGATCCCAGTGCCAACGGGGGTCTGGGGCAAGC
GTCACCGATTGCCGACATCAATTTGGGTTCTGGCGATGGCTCGAATACCT
CTAACTTCAGTTCAAATCCCAGCAACTTTGTCACCATGAATGGCAAGGTT
TACTTCACGGCAGAAACCTTTGATTCGTGGATCGACGTTTACGAGTACGA
CCCCGCCGCAAACGAAGGGGCCGGCCAACTCCGCCGGGTTTACGACCTGC
CGACGACATTCACATTTGATGAGATGGAAGCGCTCAGCGGCAAGCTGTAT
TTCTCGGGCGACGACGGAGAACATGGCTACGAACTCTGGGAGCTTGATCT
TACTAGCGAAGGAGGCATTCCAAGCGTTCGAATGTTAGCCGATTTCTTCG
TGGGAACGAGCGGTTCGGTTCCGATGATGCTGACCGCACACAACAGCAAG
CTCTACTACATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107054:10..621-

>mRNA_M-pyrifera_M_contig107054.1509.1 ID=mRNA_M-pyrifera_M_contig107054.1509.1|Name=mRNA_M-pyrifera_M_contig107054.1509.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig107054:10..621- (Macrocystis pyrifera P11B4 male)
CTGGAGACATTGGAATCGCGATGGCCCCTCTCGGTGAGTCCGATCTACGC
TGACGTTTCGATCGATGACTCCTATGTTTCGTACGAATCTGGAATCGTTC
TCGACGATGTCCTGTATTTTTCAGGCGAGACGCGACACGACCAAATTGGG
CAGGAGTTCATGAAATACGATCCCAGTGCCAACGGGGGTCTGGGGCAAGC
GTCACCGATTGCCGACATCAATTTGGGTTCTGGCGATGGCTCGAATACCT
CTAACTTCACTGGAGACATTGGAATCGCGATGGCCCCTCTCGGTGAGTCC
GATCTACGCTGACGTTTCGATCGATGACTCCTATGTTTCGTACGAATCTG
GAATCGTTCTCGACGATGTCCTGTATTTTTCAGGCGAGACGCGACACGAC
CAAATTGGGCAGGAGTTCATGAAATACGATCCCAGTGCCAACGGGGGTCT
GGGGCAAGCGTCACCGATTGCCGACATCAATTTGGGTTCTGGCGATGGCT
CGAATACCTCTAACTTCACGCTCAGCGGCAAGCTGTATTTCTCGGGCGAC
GACGGAGAACATGGCTACGAACTCTGGGAGCTTGATCTTACTAGCGAAGG
AGGCATTCCAAGCGTTCGAATGTTAGCCGATTTCTTCGTGGGAACGAGCG
GTTCGGTTCCGATGATGCTGACCGCACACAACAGCAAGCTCTACTACATG
CGCTCAGCGGCAAGCTGTATTTCTCGGGCGACGACGGAGAACATGGCTAC
GAACTCTGGGAGCTTGATCTTACTAGCGAAGGAGGCATTCCAAGCGTTCG
AATGTTAGCCGATTTCTTCGTGGGAACGAGCGGTTCGGTTCCGATGATGC
TGACCGCACACAACAGCAAGCTCTACTACATG
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