mRNA_M-pyrifera_M_contig107035.1502.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107035.1502.1
Unique NamemRNA_M-pyrifera_M_contig107035.1502.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107035.1502.1 vs. uniprot
Match: A0A369IHZ2_9BACT (SdrD_B domain-containing protein (Fragment) n=1 Tax=Runella aurantiaca TaxID=2282308 RepID=A0A369IHZ2_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 4.360e-7
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 MTWDGPDRSA-DVNPRGLGGIDF-GASDSAIMFSYKVSEDFPFTLEVYSGSTVHYCEAPIVVPASS--EFTLYTVPLSSFLAVGTGCDFSDVGAVNIL 282
            +TWDG D  A  +NP GLGGI+  G  +   + +        FTL VY+ +  +Y E+ +VV + +  +F    V  ++F AVG+G D S+VGA+ ++
Sbjct: 1398 LTWDGNDNDALTLNPTGLGGINMTGGGEFGFLIAGADILRSKFTLRVYTDAA-NYSESVVVVDSGTVTQFANIPVKFTTFTAVGSGVDLSNVGAIQLI 1494
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BLAST of mRNA_M-pyrifera_M_contig107035.1502.1 vs. uniprot
Match: UPI0019033FB6 (PEP-CTERM sorting domain-containing protein n=1 Tax=Roseibacillus ishigakijimensis TaxID=454146 RepID=UPI0019033FB6)

HSP 1 Score: 53.9 bits (128), Expect = 1.910e-6
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:    4 TWDGPDRSADVNPRGLGGIDFGASDSAIMFSYKV--SEDFPFTLEVYSGSTVHYCEA---PIVVPASSEFTLYTVPLSSF-LAVGTGCDFSDVGAVNIL 282
            TWDG D S  +NP GLGG+D     S ++F +    +++  + +  YS ++ H       P  +P S     Y+   S F +  GTG DFS++GA+ I+
Sbjct:  104 TWDGEDGSTALNPIGLGGVDLANLYSGLLFEFTSDGADNVQWDIVFYSDASNHSTYTIYQPFSLPVSD--VTYSPSFSDFAVTAGTGADFSNIGAIEIM 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107035.1502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A369IHZ2_9BACT4.360e-735.71SdrD_B domain-containing protein (Fragment) n=1 Ta... [more]
UPI0019033FB61.910e-633.33PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107035contigM-pyrifera_M_contig107035:312..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.248224-CDS-M-pyrifera_M_contig107035:311..5961622815580.248224-CDS-M-pyrifera_M_contig107035:311..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107035 312..596 -
1692277473.1571276-CDS-M-pyrifera_M_contig107035:311..5961692277473.1571276-CDS-M-pyrifera_M_contig107035:311..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107035 312..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107035.1502.1prot_M-pyrifera_M_contig107035.1502.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107035 312..596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107035.1502.1

>prot_M-pyrifera_M_contig107035.1502.1 ID=prot_M-pyrifera_M_contig107035.1502.1|Name=mRNA_M-pyrifera_M_contig107035.1502.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MTWDGPDRSADVNPRGLGGIDFGASDSAIMFSYKVSEDFPFTLEVYSGST
VHYCEAPIVVPASSEFTLYTVPLSSFLAVGTGCDFSDVGAVNILF
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mRNA from alignment at M-pyrifera_M_contig107035:312..596-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107035.1502.1 ID=mRNA_M-pyrifera_M_contig107035.1502.1|Name=mRNA_M-pyrifera_M_contig107035.1502.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig107035:312..596- (Macrocystis pyrifera P11B4 male)
ATGACGTGGGATGGCCCAGATCGCAGTGCTGATGTGAATCCGCGCGGCCT
GGGCGGCATCGACTTTGGAGCCTCGGATTCCGCCATTATGTTCAGCTACA
AGGTCAGCGAGGACTTTCCCTTTACACTGGAGGTCTACTCAGGAAGCACG
GTCCACTACTGTGAAGCACCCATTGTCGTACCTGCTTCCAGTGAGTTCAC
TCTGTACACAGTTCCGCTCAGCTCCTTCCTCGCTGTTGGAACTGGGTGTG
ACTTTTCTGACGTTGGTGCGGTGAATATTCTCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107035:312..596-

>mRNA_M-pyrifera_M_contig107035.1502.1 ID=mRNA_M-pyrifera_M_contig107035.1502.1|Name=mRNA_M-pyrifera_M_contig107035.1502.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig107035:312..596- (Macrocystis pyrifera P11B4 male)
ATGACGTGGGATGGCCCAGATCGCAGTGCTGATGTGAATCCGCGCGGCCT
GGGCGGCATCGACTTTGGAGCCTCGGATTCCGCCATTATGTTCAGCTACA
AGGTCAGCGAGGACTTTCCCTTTACACTGGAGGTCTACTCAGGAAGCACG
GTCCACTACTGTGAAGCACCCATTGTCGTACCTGCTTCCAGTGAGTTCAC
TCTGTACACAGTTCCGCTCAGCTCCTTCCTCGCTGTTGGAACTGGGTGTG
ACTTTTCTGACGTTGGTGCGGTGAATATTCTCTTTATGACGTGGGATGGC
CCAGATCGCAGTGCTGATGTGAATCCGCGCGGCCTGGGCGGCATCGACTT
TGGAGCCTCGGATTCCGCCATTATGTTCAGCTACAAGGTCAGCGAGGACT
TTCCCTTTACACTGGAGGTCTACTCAGGAAGCACGGTCCACTACTGTGAA
GCACCCATTGTCGTACCTGCTTCCAGTGAGTTCACTCTGTACACAGTTCC
GCTCAGCTCCTTCCTCGCTGTTGGAACTGGGTGTGACTTTTCTGACGTTG
GTGCGGTGAATATTCTCTTT
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