mRNA_M-pyrifera_M_contig106905.1477.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106905.1477.1
Unique NamemRNA_M-pyrifera_M_contig106905.1477.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Match: A0A7S4HUZ6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HUZ6_9EUKA)

HSP 1 Score: 124 bits (312), Expect = 4.490e-34
Identity = 57/96 (59.38%), Postives = 76/96 (79.17%), Query Frame = 1
Query:    7 AAEASQVMYAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTHYGLGNVLATCFVNAFHHIGMYLFFAGVRQTKLILLFTGTLQLLL 294
            ++ A+ V++ +Y SK+WEFLD++ V+L GG++++QFK HHWTTLSV WVS    +GN+L TCFVN+FHHI MYL+F GV   K ILLFTGT QL+L
Sbjct:   61 SSNAAIVVHLFYYSKMWEFLDLILVSLSGGELSYQFKVHHWTTLSVVWVSMQGNMGNLLITCFVNSFHHIFMYLYFGGVSSAKNILLFTGTAQLVL 156          
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Match: A0A814UDE1_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814UDE1_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 1.360e-9
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   19 SQVMYAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTH---YGLGN----VLATCFVNAFHHIGMYLFFAGVRQT 252
            S ++Y Y  SKL+E+LDI+FV LM G ++  F+ HH +TL V W+S +   + L N    ++ T  +N FHHI +YL+ +   +T
Sbjct:  163 SILLYIYLCSKLYEYLDIIFVVLMRGTISRHFRVHHLSTLIVTWISIYSIEHHLINLSWLIIPTILLNTFHHIILYLYLSLTDKT 247          
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Match: A0A816N0A1_9BILA (Elongation of very long chain fatty acids protein n=6 Tax=Rotaria TaxID=231623 RepID=A0A816N0A1_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 1.630e-8
Identity = 39/87 (44.83%), Postives = 44/87 (50.57%), Query Frame = 1
Query:   31 YAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTHYGLGNVLATCFVNAFHHIGMYLFFAGVRQTKLILLFTGTLQLL 291
            Y +YLSKLWEFLDI  V L    V   F++HH TT SV  V     +     T   N+  H  MY  FAGV     ILL  G  QLL
Sbjct:  103 YIFYLSKLWEFLDIYLVILNKTPVLMHFRWHHQTTPSVVLVGLLGDVSYEWPTLVCNSLLHTFMYPHFAGVWNVHRILLVLGASQLL 189          
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Match: A0A816QCQ8_9BILA (Elongation of very long chain fatty acids protein n=3 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816QCQ8_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 2.770e-8
Identity = 39/87 (44.83%), Postives = 44/87 (50.57%), Query Frame = 1
Query:   31 YAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTHYGLGNVLATCFVNAFHHIGMYLFFAGVRQTKLILLFTGTLQLL 291
            Y +YLSKLWEFLDI  V L    V   F++HH TT SV  V     +     T   N+  H  MY  FAGV     ILL  G  QLL
Sbjct:  409 YIFYLSKLWEFLDIYLVILNKTPVLMHFRWHHQTTPSVVLVGLLGDVSYEWPTLVCNSLLHTFMYPHFAGVWNVHRILLVLGASQLL 495          
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Match: A0A0D2AQ02_9PEZI (Uncharacterized protein n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D2AQ02_9PEZI)

HSP 1 Score: 57.8 bits (138), Expect = 7.130e-8
Identity = 32/86 (37.21%), Postives = 47/86 (54.65%), Query Frame = 1
Query:   31 YAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTHYGLGNVLATCFVNAFHHIGMYLFFAGVRQTKLILLFTGTLQL 288
            YA +LS+++E+LD++F    G      F FHH TT  + W               +N FHH+ M+LFFAGV  T+ +L +T  +QL
Sbjct:   87 YAVHLSRVFEYLDMLFFVAAGHAPDLHFAFHHLTTPYLTWFRALRDFDGWRLFVGLNTFHHVLMHLFFAGVTSTRALLPWTRYVQL 172          
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Match: A0A812UQ14_9DINO (Hypothetical protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812UQ14_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 1.920e-7
Identity = 28/79 (35.44%), Postives = 39/79 (49.37%), Query Frame = 1
Query:   13 EASQVMYAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTHYGLGNVLATCFVNAFHHIGMYLFFAGVRQ 249
            E   +   Y+ SK WEFLDI+FV+LMG      F  HH TT  +AW+   Y   +       N   H+ +Y +F G + 
Sbjct:   78 EVDMIFGVYFYSKAWEFLDIIFVSLMGIQPNLHFIVHHTTTPCLAWLVWTYRSASGAVFLLANVLMHVFLYAYFGGAKS 156          
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Match: A0A822GWL0_9BILA (Elongation of very long chain fatty acids protein (Fragment) n=7 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A822GWL0_9BILA)

HSP 1 Score: 56.2 bits (134), Expect = 2.370e-7
Identity = 36/87 (41.38%), Postives = 42/87 (48.28%), Query Frame = 1
Query:   31 YAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTHYGLGNVLATCFVNAFHHIGMYLFFAGVRQTKLILLFTGTLQLL 291
            Y +YLSKLWEFLDI  V L    V   F++HH TT SV        +     T   N   H  MY  FAG+     ILL  G  QL+
Sbjct:  103 YIFYLSKLWEFLDIYLVILNKTPVLMHFRWHHQTTPSVVLAGLIGNISYEWPTIVSNTLLHTFMYPHFAGIWNAYPILLVLGAWQLI 189          
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Match: A0A815CCV7_9BILA (Elongation of very long chain fatty acids protein n=6 Tax=Adineta steineri TaxID=433720 RepID=A0A815CCV7_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 1.540e-6
Identity = 32/86 (37.21%), Postives = 41/86 (47.67%), Query Frame = 1
Query:   31 YAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTHYGLGNVLATCFVNAFHHIGMYLFFAGVRQTKLILLFTGTLQL 288
            Y +YLSKLWEF+D+  V L    V   F++HH TT SV        +     T   N   H  MY  FAG+     +L+  G  QL
Sbjct:  103 YIFYLSKLWEFIDVYLVILNKTPVLMHFRWHHQTTPSVVLAGLLGDVSYEYPTIISNTLLHTFMYPHFAGIWNVHRVLVILGAWQL 188          
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Match: A0A821FEA9_9BILA (Elongation of very long chain fatty acids protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821FEA9_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 1.540e-6
Identity = 35/88 (39.77%), Postives = 43/88 (48.86%), Query Frame = 1
Query:   31 YAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTHYGLGNVLATCFVNAFHHIGMYLFFAGVRQTKLILLFTGTLQLLL 294
            Y +YLSKLWEF+DI  V L    V   F++HH TT SV        +     T   N+  H  MY  FA V     ILL  G  QL++
Sbjct:  103 YIFYLSKLWEFIDIYLVILNKTPVLMHFRWHHQTTPSVVLAGLLGDVSYEWPTIVSNSLLHTFMYPHFADVWNVSKILLVLGASQLII 190          
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Match: A0A815KLH7_ADIRI (Elongation of very long chain fatty acids protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815KLH7_ADIRI)

HSP 1 Score: 52.0 bits (123), Expect = 7.880e-6
Identity = 33/89 (37.08%), Postives = 42/89 (47.19%), Query Frame = 1
Query:   25 VMYAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTHYGLGNVLATCFVNAFHHIGMYLFFAGVRQTKLILLFTGTLQLL 291
            V Y +YLSKLWEF+D+  V L    V   F++HH TT SV        +         N   H  MY  FAG+     +L+  G  QLL
Sbjct:   62 VWYIFYLSKLWEFMDVYLVILNKTPVLPHFRWHHQTTPSVVLAGLRGDISYEWPILASNTLLHTFMYPHFAGLWNVHKVLVILGAWQLL 150          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106905.1477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S4HUZ6_9EUKA4.490e-3459.38Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A814UDE1_9BILA1.360e-940.00Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A816N0A1_9BILA1.630e-844.83Elongation of very long chain fatty acids protein ... [more]
A0A816QCQ8_9BILA2.770e-844.83Elongation of very long chain fatty acids protein ... [more]
A0A0D2AQ02_9PEZI7.130e-837.21Uncharacterized protein n=1 Tax=Verruconis gallopa... [more]
A0A812UQ14_9DINO1.920e-735.44Hypothetical protein n=3 Tax=Symbiodinium TaxID=29... [more]
A0A822GWL0_9BILA2.370e-741.38Elongation of very long chain fatty acids protein ... [more]
A0A815CCV7_9BILA1.540e-637.21Elongation of very long chain fatty acids protein ... [more]
A0A821FEA9_9BILA1.540e-639.77Elongation of very long chain fatty acids protein ... [more]
A0A815KLH7_ADIRI7.880e-637.08Elongation of very long chain fatty acids protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106905contigM-pyrifera_M_contig106905:2..295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.3
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog5037.XP_001538193.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GNS1/SUR4 family
EggNOG OGs20NV6@147545,2EWFT@1,2SY9Y@2759,3AUUI@33154,3PHUU@4751,3R5C8@4890
COG Functional cat.I
Best tax levelEurotiomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size294
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.7066216-CDS-M-pyrifera_M_contig106905:1..2681622815578.7066216-CDS-M-pyrifera_M_contig106905:1..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106905 2..268 -
1692277472.4023354-CDS-M-pyrifera_M_contig106905:1..2681692277472.4023354-CDS-M-pyrifera_M_contig106905:1..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106905 2..268 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.7173805-UTR-M-pyrifera_M_contig106905:268..2951622815578.7173805-UTR-M-pyrifera_M_contig106905:268..295Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106905 269..295 -
1692277472.4129245-UTR-M-pyrifera_M_contig106905:268..2951692277472.4129245-UTR-M-pyrifera_M_contig106905:268..295Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106905 269..295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106905.1477.1prot_M-pyrifera_M_contig106905.1477.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106905 2..268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106905.1477.1

>prot_M-pyrifera_M_contig106905.1477.1 ID=prot_M-pyrifera_M_contig106905.1477.1|Name=mRNA_M-pyrifera_M_contig106905.1477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MYAYYLSKLWEFLDIVFVTLMGGDVAWQFKFHHWTTLSVAWVSTHYGLGN
VLATCFVNAFHHIGMYLFFAGVRQTKLILLFTGTLQLLL
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mRNA from alignment at M-pyrifera_M_contig106905:2..295-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106905.1477.1 ID=mRNA_M-pyrifera_M_contig106905.1477.1|Name=mRNA_M-pyrifera_M_contig106905.1477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig106905:2..295- (Macrocystis pyrifera P11B4 male)
CATGTCGCAGCCGAGGCCAGCCAGGTCATGTACGCCTACTATCTCTCCAA GCTGTGGGAGTTCCTGGACATCGTTTTCGTTACTCTCATGGGTGGCGACG TAGCGTGGCAGTTCAAGTTCCACCACTGGACGACACTCTCTGTCGCATGG GTGTCGACCCACTACGGCCTCGGGAATGTGCTGGCCACGTGCTTCGTTAA CGCATTCCACCATATCGGCATGTACCTCTTCTTTGCTGGAGTGAGGCAGA CGAAGCTCATACTCCTCTTCACAGGCACTCTCCAGCTCCTCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106905:2..295-

>mRNA_M-pyrifera_M_contig106905.1477.1 ID=mRNA_M-pyrifera_M_contig106905.1477.1|Name=mRNA_M-pyrifera_M_contig106905.1477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig106905:2..295- (Macrocystis pyrifera P11B4 male)
ATGTACGCCTACTATCTCTCCAAGCTGTGGGAGTTCCTGGACATCGTTTT
CGTTACTCTCATGGGTGGCGACGTAGCGTGGCAGTTCAAGTTCCACCACT
GGACGACACTCTCTGTCGCATGGGTGTCGACCCACTACGGCCTCGGGAAT
GTGCTGGCCACGTGCTTCGTTAACGCATTCCACCATATCGGCATGTACCT
CTTCTTTGCTGGAGTGAGGCAGACGAAGCTCATACTCCTCTTCACAGGCA
CTCTCCAGCTCCTCTTGATGTACGCCTACTATCTCTCCAAGCTGTGGGAG
TTCCTGGACATCGTTTTCGTTACTCTCATGGGTGGCGACGTAGCGTGGCA
GTTCAAGTTCCACCACTGGACGACACTCTCTGTCGCATGGGTGTCGACCC
ACTACGGCCTCGGGAATGTGCTGGCCACGTGCTTCGTTAACGCATTCCAC
CATATCGGCATGTACCTCTTCTTTGCTGGAGTGAGGCAGACGAAGCTCAT
ACTCCTCTTCACAGGCACTCTCCAGCTCCTCTTG
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