mRNA_M-pyrifera_M_contig106829.1468.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106829.1468.1
Unique NamemRNA_M-pyrifera_M_contig106829.1468.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Match: A0A2E7KAY4_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KAY4_9PLAN)

HSP 1 Score: 199 bits (507), Expect = 3.150e-64
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 1 
Query:    1 FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 294
            FLFDLDGNLIESRVDTLGPRATLDA ACREKY+SRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT
Sbjct:   52 FLFDLDGNLIESRVDTLGPRATLDAAACREKYESRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 149
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BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Match: A0A812QXD2_SYMMI (NolG protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QXD2_SYMMI)

HSP 1 Score: 193 bits (490), Expect = 4.460e-55
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:    1 FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 294
            FLFDLDG LIESRVDTLGPRATLDADACREKY+SRLNELGEV+FQRIEVKPFAINHNGVEMGLIVREPEEEED WAVEL PGNYMAFFEPWDSGVYDT
Sbjct: 2624 FLFDLDGTLIESRVDTLGPRATLDADACREKYESRLNELGEVNFQRIEVKPFAINHNGVEMGLIVREPEEEEDVWAVELLPGNYMAFFEPWDSGVYDT 2721
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BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Match: UPI001C04AA9C (hypothetical protein n=1 Tax=Zooshikella sp. WH53 TaxID=2827238 RepID=UPI001C04AA9C)

HSP 1 Score: 157 bits (398), Expect = 1.260e-47
Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    1 FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 294
            F FDL+GNL++S +DTLGPR + D D  +EKY SRL+ELGEV FQRIEVKPF+I HNGV+MGLIVREPEEE+D WAVE+ PGNYMAFFEPWDSG YDT
Sbjct:   52 FKFDLEGNLVDSTIDTLGPRGSYDDDFRKEKYLSRLDELGEVKFQRIEVKPFSIEHNGVKMGLIVREPEEEDDVWAVEMLPGNYMAFFEPWDSGEYDT 149
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BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Match: UPI00131AE8CE (hypothetical protein n=1 Tax=Paraglaciecola sp. L3A3 TaxID=2686358 RepID=UPI00131AE8CE)

HSP 1 Score: 146 bits (368), Expect = 4.620e-43
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 294
            F FDL GNL++S +DT+G R + D DA +  Y +RL ELG+V +QRIEVKPF+INHNGVE+GLI REPE+E+D WAVEL PGNYMAFFEPWDSG YDT
Sbjct:   52 FKFDLSGNLVDSIIDTIGSRGSYDEDARKNIYLARLKELGDVTYQRIEVKPFSINHNGVEIGLITREPEDEDDIWAVELLPGNYMAFFEPWDSGEYDT 149
[Close]
BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Match: A0A7Z0QRB0_9GAMM (Uncharacterized protein n=1 Tax=Luteimonas deserti TaxID=2752306 RepID=A0A7Z0QRB0_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 1.730e-40
Identity = 62/98 (63.27%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 294
            + FDL G LI++++D+ GPR++LD DA R KYD RL  LG+V F+R+EV PF++   G+E GLI R PEEE+D WAVE+QPGNYMAFFEPWDSG YDT
Sbjct:   51 YTFDLSGQLIDAKIDSFGPRSSLDDDARRAKYDERLISLGDVSFERVEVAPFSVERFGLEFGLIARPPEEEDDAWAVEMQPGNYMAFFEPWDSGEYDT 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Match: A0A483ARI0_9GAMM (Uncharacterized protein n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A483ARI0_9GAMM)

HSP 1 Score: 136 bits (343), Expect = 1.810e-39
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 294
            F FD +GNL+E  +D +GPR + D +  +EKY +RLNELGEV + RIEVKPF++  NGV  GLI REPE++ED WAVEL PGNYMAFFEPWDSG YDT
Sbjct:   36 FKFDNEGNLLEHIIDEIGPRGSYDENERKEKYLARLNELGEVKYCRIEVKPFSVERNGVVFGLITREPEDKEDVWAVELLPGNYMAFFEPWDSGEYDT 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Match: A0A853I9Y1_9GAMM (Uncharacterized protein n=2 Tax=Endozoicomonas sp. SM1973 TaxID=2751884 RepID=A0A853I9Y1_9GAMM)

HSP 1 Score: 136 bits (342), Expect = 4.150e-39
Identity = 64/98 (65.31%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 294
            F FDL+GNL++S +D LGPR + D +   +KY + L+ LGEVD+ RIEVKPF++ +N V +GLIVREPE EED WAVEL PGNYMAFFEPWDSG YDT
Sbjct:   52 FKFDLNGNLVDSYIDCLGPRGSYDDEERTKKYVALLSSLGEVDYCRIEVKPFSVKYNSVNIGLIVREPEYEEDVWAVELLPGNYMAFFEPWDSGEYDT 149
[Close]
BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Match: UPI001963D6E9 (hypothetical protein n=1 Tax=Stenotrophomonas lactitubi TaxID=2045214 RepID=UPI001963D6E9)

HSP 1 Score: 134 bits (338), Expect = 1.730e-38
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    1 FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 294
            +LFD  GNL+E+R+D LG RATLD    R  Y++ LNELGEV +QRI V PFA+   G   GL+VR P ++ED WAVE+QPGNYMAFFEPWDSG+YDT
Sbjct:   53 YLFDTAGNLLEARIDELGQRATLDRAERRRLYEAHLNELGEVTYQRINVAPFALERFGTTFGLVVRPPYDDEDVWAVEMQPGNYMAFFEPWDSGIYDT 150
[Close]
BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Match: A0A1K1ZQK9_STRAR (Uncharacterized protein n=1 Tax=Streptomyces atratus TaxID=1893 RepID=A0A1K1ZQK9_STRAR)

HSP 1 Score: 133 bits (334), Expect = 6.820e-38
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    1 FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 294
            FLF+  G LI++ +D  GPRAT+D DA RE Y+  L ELG V F+RIEV PFA+   G   GL++REP++E DEWAVELQPG+YMAFFEPWDSG YDT
Sbjct:   52 FLFNAAGQLIDAVIDRFGPRATVDDDARREVYERLLRELGPVTFERIEVAPFAVERFGTTFGLVIREPDDEADEWAVELQPGDYMAFFEPWDSGEYDT 149
[Close]
BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Match: A0A6L5QMK5_9BURK (Uncharacterized protein n=1 Tax=Duganella aquatilis TaxID=2666082 RepID=A0A6L5QMK5_9BURK)

HSP 1 Score: 131 bits (330), Expect = 2.770e-37
Identity = 57/98 (58.16%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    1 FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVKPFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT 294
            +LFD  G LIE+++D+LGPRA+LD +A +  Y+ RL ELG+V F+RIE+ PF+++      GL++REP++++D WAVE+QPGNYMAFFEPWDSG YDT
Sbjct:   52 YLFDQQGVLIEAKIDSLGPRASLDHEARKSLYEQRLKELGDVSFERIEIAPFSVDRFDTTFGLVLREPDDDDDVWAVEVQPGNYMAFFEPWDSGEYDT 149
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106829.1468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KAY4_9PLAN3.150e-6497.96Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A812QXD2_SYMMI4.460e-5594.90NolG protein n=1 Tax=Symbiodinium microadriaticum ... [more]
UPI001C04AA9C1.260e-4775.51hypothetical protein n=1 Tax=Zooshikella sp. WH53 ... [more]
UPI00131AE8CE4.620e-4369.39hypothetical protein n=1 Tax=Paraglaciecola sp. L3... [more]
A0A7Z0QRB0_9GAMM1.730e-4063.27Uncharacterized protein n=1 Tax=Luteimonas deserti... [more]
A0A483ARI0_9GAMM1.810e-3965.31Uncharacterized protein n=4 Tax=Gammaproteobacteri... [more]
A0A853I9Y1_9GAMM4.150e-3965.31Uncharacterized protein n=2 Tax=Endozoicomonas sp.... [more]
UPI001963D6E91.730e-3863.27hypothetical protein n=1 Tax=Stenotrophomonas lact... [more]
A0A1K1ZQK9_STRAR6.820e-3863.27Uncharacterized protein n=1 Tax=Streptomyces atrat... [more]
A0A6L5QMK5_9BURK2.770e-3758.16Uncharacterized protein n=1 Tax=Duganella aquatili... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106829contigM-pyrifera_M_contig106829:327..623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score128.3
Seed ortholog evalue2e-27
Seed eggNOG ortholog1279017.AQYJ01000023_gene3301
Hectar predicted targeting categoryother localisation
EggNOG OGs2DU0N@1,33NF9@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.3311226-CDS-M-pyrifera_M_contig106829:326..6231622815578.3311226-CDS-M-pyrifera_M_contig106829:326..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106829 327..623 -
1692277472.2380795-CDS-M-pyrifera_M_contig106829:326..6231692277472.2380795-CDS-M-pyrifera_M_contig106829:326..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106829 327..623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106829.1468.1prot_M-pyrifera_M_contig106829.1468.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106829 327..623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106829.1468.1

>prot_M-pyrifera_M_contig106829.1468.1 ID=prot_M-pyrifera_M_contig106829.1468.1|Name=mRNA_M-pyrifera_M_contig106829.1468.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
FLFDLDGNLIESRVDTLGPRATLDADACREKYDSRLNELGEVDFQRIEVK
PFAINHNGVEMGLIVREPEEEEDEWAVELQPGNYMAFFEPWDSGVYDT*
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mRNA from alignment at M-pyrifera_M_contig106829:327..623-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106829.1468.1 ID=mRNA_M-pyrifera_M_contig106829.1468.1|Name=mRNA_M-pyrifera_M_contig106829.1468.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig106829:327..623- (Macrocystis pyrifera P11B4 male)
TTTCTGTTTGACCTGGACGGGAATTTAATCGAATCCCGGGTTGATACCCT
GGGCCCGCGGGCGACCCTGGATGCCGATGCCTGTCGCGAAAAGTATGATT
CGCGTCTGAATGAACTGGGGGAAGTGGACTTTCAACGAATCGAAGTCAAG
CCGTTCGCGATCAATCACAATGGTGTCGAGATGGGGCTGATTGTCCGCGA
GCCCGAAGAGGAAGAAGATGAATGGGCGGTCGAACTTCAGCCGGGAAACT
ATATGGCTTTTTTCGAGCCCTGGGACAGTGGTGTTTATGATACCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106829:327..623-

>mRNA_M-pyrifera_M_contig106829.1468.1 ID=mRNA_M-pyrifera_M_contig106829.1468.1|Name=mRNA_M-pyrifera_M_contig106829.1468.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig106829:327..623- (Macrocystis pyrifera P11B4 male)
TTTCTGTTTGACCTGGACGGGAATTTAATCGAATCCCGGGTTGATACCCT
GGGCCCGCGGGCGACCCTGGATGCCGATGCCTGTCGCGAAAAGTATGATT
CGCGTCTGAATGAACTGGGGGAAGTGGACTTTCAACGAATCGAAGTCAAG
CCGTTCGCGATCAATCACAATGGTGTCGAGATGGGGCTGATTGTCCGCGA
GCCCGAAGAGGAAGAAGATGAATGGGCGGTCGAACTTCAGCCGGGAAACT
ATATGGCTTTTTTCGAGCCCTGGGACAGTGGTGTTTATGATACCTGATTT
CTGTTTGACCTGGACGGGAATTTAATCGAATCCCGGGTTGATACCCTGGG
CCCGCGGGCGACCCTGGATGCCGATGCCTGTCGCGAAAAGTATGATTCGC
GTCTGAATGAACTGGGGGAAGTGGACTTTCAACGAATCGAAGTCAAGCCG
TTCGCGATCAATCACAATGGTGTCGAGATGGGGCTGATTGTCCGCGAGCC
CGAAGAGGAAGAAGATGAATGGGCGGTCGAACTTCAGCCGGGAAACTATA
TGGCTTTTTTCGAGCCCTGGGACAGTGGTGTTTATGATACCTGA
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