mRNA_M-pyrifera_M_contig106828.1467.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106828.1467.1
Unique NamemRNA_M-pyrifera_M_contig106828.1467.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106828.1467.1 vs. uniprot
Match: A0A351EV76_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EV76_9ACTN)

HSP 1 Score: 103 bits (258), Expect = 2.290e-25
Identity = 64/151 (42.38%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:    1 REEFDERLQQITSRAERLADSSKEWVSVRIGTVSAVEDLGDAVDAVEADLDAAEEHPEQPTYRSVLDRQLRTWRSRAERLQVQEALAEMEVREELSAASSRLHAARSRALVELRHTGEDARRTASELRDDLEELMRDVRGVIDRAVDALTD 453
            RE F ++  ++  R   L D  +    V+I T  A+EDLG AVD +EADLD    H +  +YR+ +D+QLR+WRSR + L++Q  LA MEVR++L    +RL  AR+  LVELR    D +   +++RDD+E ++ D+R  ++RA DAL D
Sbjct:    6 RELFVQQHSRLALRCSELHDRLESRPEVKIETAHAIEDLGAAVDGLEADLDVTR-HADPMSYRAAVDKQLRSWRSRTDWLRLQGVLASMEVRDDLDDVGNRLSHARAGVLVELREAAGDTKHLVTDVRDDVEAILVDIRHAVERAADALMD 155
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BLAST of mRNA_M-pyrifera_M_contig106828.1467.1 vs. uniprot
Match: A0A7Y2DKY1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DKY1_9ACTN)

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-16
Identity = 53/149 (35.57%), Postives = 83/149 (55.70%), Query Frame = 1 
Query:   10 FDERLQQITSRAERLADSSKEWVSVRIGTVSAVEDLGDAVDAVEADLDAAEEHPEQPTYRSVLDRQLRTWRSRAERLQVQEALAEMEVREELSAASSRLHAARSRALVELRHTGEDARRTASELRDDLEELMRDVRGVIDRAVDALTDR 456
            + +RL  + S  + L D   +W  V IG  + V  L D +D+ E D  A  E    P Y   +D Q+R W+SR + +++Q  L  ME+R+EL     RL  AR+  ++EL++   D+     +LRDD+EE++ DVR  ++RA  A+ DR
Sbjct:   42 YGDRLTSLQSSLDDLRDDVDKWEQVEIGIPTKVRHLADEIDSFEIDFRAVTE-TSAPDYELAMDSQVRNWKSRLDAVRLQGVLGSMELRDELEELGHRLEHARAGVMIELQNVLHDSGDVVVDLRDDVEEVLTDVRHGLERAYAAIFDR 189
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106828.1467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A351EV76_9ACTN2.290e-2542.38Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7Y2DKY1_9ACTN1.100e-1635.57Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106828contigM-pyrifera_M_contig106828:51..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.2949302-CDS-M-pyrifera_M_contig106828:50..5151622815578.2949302-CDS-M-pyrifera_M_contig106828:50..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106828 51..515 -
1692277472.2254384-CDS-M-pyrifera_M_contig106828:50..5151692277472.2254384-CDS-M-pyrifera_M_contig106828:50..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106828 51..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106828.1467.1prot_M-pyrifera_M_contig106828.1467.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106828 51..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106828.1467.1

>prot_M-pyrifera_M_contig106828.1467.1 ID=prot_M-pyrifera_M_contig106828.1467.1|Name=mRNA_M-pyrifera_M_contig106828.1467.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
REEFDERLQQITSRAERLADSSKEWVSVRIGTVSAVEDLGDAVDAVEADL
DAAEEHPEQPTYRSVLDRQLRTWRSRAERLQVQEALAEMEVREELSAASS
RLHAARSRALVELRHTGEDARRTASELRDDLEELMRDVRGVIDRAVDALT
DRDD*
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mRNA from alignment at M-pyrifera_M_contig106828:51..515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106828.1467.1 ID=mRNA_M-pyrifera_M_contig106828.1467.1|Name=mRNA_M-pyrifera_M_contig106828.1467.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig106828:51..515- (Macrocystis pyrifera P11B4 male)
CGAGAGGAGTTCGATGAACGCCTGCAGCAGATCACGTCCCGCGCCGAGCG
CCTCGCAGACTCCTCGAAGGAGTGGGTGTCCGTCAGGATCGGCACCGTGT
CGGCCGTCGAAGACCTCGGCGACGCCGTCGACGCGGTCGAGGCCGATCTC
GACGCCGCCGAAGAGCATCCCGAACAGCCCACATATCGCTCCGTGCTCGA
TCGTCAGCTCCGCACATGGCGGTCGCGAGCCGAGCGGCTGCAAGTGCAGG
AGGCGCTTGCGGAAATGGAGGTCCGCGAGGAGCTCTCCGCTGCGTCGAGC
CGCTTGCACGCGGCCCGCTCCCGGGCGCTCGTCGAGCTGCGCCACACAGG
CGAGGACGCCAGGCGCACAGCCTCGGAACTGCGTGACGATCTCGAAGAGC
TGATGCGCGACGTGCGTGGTGTGATCGACCGCGCCGTCGACGCGCTCACC
GACCGAGACGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106828:51..515-

>mRNA_M-pyrifera_M_contig106828.1467.1 ID=mRNA_M-pyrifera_M_contig106828.1467.1|Name=mRNA_M-pyrifera_M_contig106828.1467.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig106828:51..515- (Macrocystis pyrifera P11B4 male)
CGAGAGGAGTTCGATGAACGCCTGCAGCAGATCACGTCCCGCGCCGAGCG
CCTCGCAGACTCCTCGAAGGAGTGGGTGTCCGTCAGGATCGGCACCGTGT
CGGCCGTCGAAGACCTCGGCGACGCCGTCGACGCGGTCGAGGCCGATCTC
GACGCCGCCGAAGAGCATCCCGAACAGCCCACATATCGCTCCGTGCTCGA
TCGTCAGCTCCGCACATGGCGGTCGCGAGCCGAGCGGCTGCAAGTGCAGG
AGGCGCTTGCGGAAATGGAGGTCCGCGAGGAGCTCTCCGCTGCGTCGAGC
CGCTTGCACGCGGCCCGCTCCCGGGCGCTCGTCGAGCTGCGCCACACAGG
CGAGGACGCCAGGCGCACAGCCTCGGAACTGCGTGACGATCTCGAAGAGC
TGATGCGCGACGTGCGTGGTGTGATCGACCGCGCCGTCGACGCGCTCACC
GACCGAGACGACTGACGAGAGGAGTTCGATGAACGCCTGCAGCAGATCAC
GTCCCGCGCCGAGCGCCTCGCAGACTCCTCGAAGGAGTGGGTGTCCGTCA
GGATCGGCACCGTGTCGGCCGTCGAAGACCTCGGCGACGCCGTCGACGCG
GTCGAGGCCGATCTCGACGCCGCCGAAGAGCATCCCGAACAGCCCACATA
TCGCTCCGTGCTCGATCGTCAGCTCCGCACATGGCGGTCGCGAGCCGAGC
GGCTGCAAGTGCAGGAGGCGCTTGCGGAAATGGAGGTCCGCGAGGAGCTC
TCCGCTGCGTCGAGCCGCTTGCACGCGGCCCGCTCCCGGGCGCTCGTCGA
GCTGCGCCACACAGGCGAGGACGCCAGGCGCACAGCCTCGGAACTGCGTG
ACGATCTCGAAGAGCTGATGCGCGACGTGCGTGGTGTGATCGACCGCGCC
GTCGACGCGCTCACCGACCGAGACGACTGA
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