mRNA_M-pyrifera_M_contig106824.1465.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106824.1465.1
Unique NamemRNA_M-pyrifera_M_contig106824.1465.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Match: H3GZC2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZC2_PHYRM)

HSP 1 Score: 104 bits (260), Expect = 3.630e-24
Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 IDINGDRDTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHFLIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGLSKEDVDRI 276
            +D+N  RD  GN+LFI+A Q GNKR+ K LLR+ AD NL N  GNTALH+L AY H +LA+YL  KGA DT  N  GLT +EGLS++DVD I
Sbjct: 1540 VDVN-TRDNHGNSLFILACQQGNKRLAKFLLRRHADMNLQNLNGNTALHYLYAYKHTDLAEYLKGKGAKDTTQNGAGLTCYEGLSQDDVDSI 1630
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BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Match: A0A8K1CP19_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP19_PYTOL)

HSP 1 Score: 101 bits (252), Expect = 4.340e-23
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 IDINGDRDTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHFLIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGLSKEDVDRI 276
            +DIN  RD  GN+LFI+  Q GNK+I K L+R+ AD NL N  GNTALH+L AY H++LA+Y+  KGAIDT+ N  GLT +EGLS +  + I
Sbjct: 1144 VDINS-RDNHGNSLFILVCQQGNKKIAKFLMRRHADMNLQNLSGNTALHYLHAYKHKDLAEYITSKGAIDTIANAAGLTCYEGLSVDQAEAI 1234
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BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Match: F0XVE9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVE9_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 7.460e-21
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:   19 RDTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHFLIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGLSKEDVDRI 276
            +D  GNTL  VA QNGNKRI K  LR+GA+ NL N  G T LH+  AY   ++A+YL  KGA D   N +GLT +EGLS ++++ I
Sbjct:   13 QDELGNTLLSVAVQNGNKRIAKLTLRRGANINLPNNNGQTVLHYAYAYGFEDIAEYLKSKGADDRPKNSDGLTCYEGLSMQEIEAI 98
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BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Match: A0A662XT26_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XT26_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.170e-20
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 IDINGDRDTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHFLIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGLSKE 261
            +D+N  RD  GNTLFI+A Q GNKR+ K LLR+ AD NL N  GNTALH+L  Y H  LA+YL  KGA D   N  GLT +EGLS++
Sbjct: 1145 VDVNA-RDNHGNTLFILACQQGNKRLAKLLLRRQADMNLQNLSGNTALHYLYEYRHVALAEYLKAKGAQDATPNSAGLTCYEGLSQD 1230
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BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Match: L1JVV8_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JVV8_GUITC)

HSP 1 Score: 85.9 bits (211), Expect = 4.500e-20
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:   19 RDTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHFLIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGLSKE 261
            +D  GNTL  +AAQNG+K I+K LLR+GA+ N  N +GNT LHF   Y   +L +YL++KGA DT+ N   LT +EGL  +
Sbjct:    7 KDDFGNTLLNIAAQNGHKNIIKALLRRGANINTQNHKGNTPLHFCFTYGFTDLGNYLVQKGADDTIENVSCLTCYEGLGND 87
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BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Match: A0A2R5GM67_9STRA (Ankyrin repeat protein, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GM67_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.570e-20
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:   19 RDTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHFLIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGLSKEDVDRI 276
            +D+ GNTL  +AAQNGNKRI K  LR+GAD N  N  G T LH+ +AY    LA+Y + KGA D++ N +GLT +EGLS EDV  +
Sbjct: 1199 KDSLGNTLLSIAAQNGNKRIAKMCLRRGADINTQNLNGQTVLHYCMAYGFEPLAEYFMGKGADDSLVNADGLTCYEGLSLEDVQNL 1284
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BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Match: A0A7S0VR97_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VR97_9CRYP)

HSP 1 Score: 85.5 bits (210), Expect = 1.130e-19
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   19 RDTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHFLIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGL 252
            RD  GNTL I+AAQNG+KRI K  LR G D N  N RG TALH+  AY++ EL DYL  KGA D + NE GL  ++G+
Sbjct:   31 RDEFGNTLLIMAAQNGHKRIAKMCLRAGGDINAQNFRGQTALHYCCAYHYDELGDYLKSKGARDDLANEYGLACYDGV 108
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BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Match: A0A812X336_SYMMI (HOS4 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X336_SYMMI)

HSP 1 Score: 85.1 bits (209), Expect = 1.290e-19
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   22 DTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHFLIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGLS 255
            D  GNTL I+AAQ G++R+ K LLR+GA+ N+ +  G+TAL +  AY+H ELADYL  +GA D++ N EGLT +EGLS
Sbjct:   15 DQFGNTLLILAAQQGSRRMCKYLLRRGANINIQSLAGHTALRYCYAYSHFELADYLKSRGADDSILNGEGLTCYEGLS 92
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BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Match: A0A1V9YA72_9STRA (WW domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA72_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.940e-19
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   19 RDTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHFLIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGLSKEDVDRI 276
            +D +GNTL  VA QN NKRI K  LRKGAD N  N  G + LH+  AY   +L +YL+EKGA D + N++GLT +EGL  E VD++
Sbjct: 1430 KDNAGNTLLSVACQNNNKRIAKLCLRKGADLNTQNLNGQSILHYCHAYGFHDLMEYLMEKGARDDLVNKDGLTCYEGLDAETVDKL 1515
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BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Match: A0A8J2WIX1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WIX1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.960e-19
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   19 RDTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHFLIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGLSKEDVDRI 276
            +D  GNTL  +A QNGNKRI K  LR+GA+ NL N  G T LH+  AY   +LA+YL  KGA D   N +GLT +EGLS E++++I
Sbjct: 1610 QDELGNTLLSIAVQNGNKRIAKLCLRRGANVNLPNNTGQTVLHYAYAYGFEDLAEYLKSKGADDRPKNADGLTCYEGLSMEEIEQI 1695
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106824.1465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GZC2_PHYRM3.630e-2459.78Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8K1CP19_PYTOL4.340e-2355.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0XVE9_AURAN7.460e-2151.16Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A662XT26_9STRA1.170e-2057.47Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
L1JVV8_GUITC4.500e-2050.62Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A2R5GM67_9STRA5.570e-2053.49Ankyrin repeat protein, putative n=1 Tax=Hondaea f... [more]
A0A7S0VR97_9CRYP1.130e-1956.41Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A812X336_SYMMI1.290e-1955.13HOS4 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A1V9YA72_9STRA4.940e-1952.33WW domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A8J2WIX1_9STRA4.960e-1952.33Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106824contigM-pyrifera_M_contig106824:6..284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1e-20
Seed eggNOG ortholog164328.Phyra83127
Preferred nameCHKA
KEGG rclassRC00002,RC00017
KEGG koko:K00866,ko:K00894,ko:K14156
KEGG ReactionR01021,R01468
KEGG Pathwayko00564,ko01100,ko05231,map00564,map01100,map05231
KEGG ModuleM00090,M00092
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001505,GO:0003674,GO:0003824,GO:0004103,GO:0004104,GO:0004305,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005938,GO:0006066,GO:0006576,GO:0006580,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006656,GO:0006657,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006869,GO:0007275,GO:0007517,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009308,GO:0009636,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0017076,GO:0019637,GO:0019695,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033265,GO:0034308,GO:0034641,GO:0035639,GO:0036094,GO:0042133,GO:0042165,GO:0042221,GO:0042439,GO:0042493,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0046983,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0052689,GO:0061061,GO:0065007,GO:0065008,GO:0070405,GO:0071702,GO:0071704,GO:0071944,GO:0090407,GO:0097159,GO:0097164,GO:0097367,GO:0099568,GO:1901160,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1903165,GO:1904681
EggNOG free text desc.Ankyrin repeats (many copies)
EggNOG OGs3Q7YN@4776,COG0510@1,COG4281@1,KOG0817@2759,KOG2686@2759
EC2.7.1.32,2.7.1.82
COG Functional cat.I
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.2286546-CDS-M-pyrifera_M_contig106824:5..2841622815578.2286546-CDS-M-pyrifera_M_contig106824:5..284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106824 6..284 +
1692277472.1974494-CDS-M-pyrifera_M_contig106824:5..2841692277472.1974494-CDS-M-pyrifera_M_contig106824:5..284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106824 6..284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106824.1465.1prot_M-pyrifera_M_contig106824.1465.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106824 6..284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106824.1465.1

>prot_M-pyrifera_M_contig106824.1465.1 ID=prot_M-pyrifera_M_contig106824.1465.1|Name=mRNA_M-pyrifera_M_contig106824.1465.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
IDINGDRDTSGNTLFIVAAQNGNKRIMKELLRKGADPNLANERGNTALHF
LIAYNHRELADYLIEKGAIDTVTNEEGLTPWEGLSKEDVDRI*
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mRNA from alignment at M-pyrifera_M_contig106824:6..284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106824.1465.1 ID=mRNA_M-pyrifera_M_contig106824.1465.1|Name=mRNA_M-pyrifera_M_contig106824.1465.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig106824:6..284+ (Macrocystis pyrifera P11B4 male)
ATCGACATCAACGGAGATCGAGACACGTCTGGAAATACGCTGTTCATCGT
AGCAGCACAAAACGGCAACAAGAGAATCATGAAAGAACTCCTCCGAAAAG
GAGCAGATCCAAACTTGGCAAACGAACGCGGAAACACAGCACTCCATTTC
CTCATCGCATACAACCACCGAGAACTTGCAGATTATCTCATCGAAAAAGG
TGCTATTGACACAGTAACAAACGAAGAAGGATTGACACCATGGGAAGGAT
TAAGCAAAGAAGACGTGGATAGGATTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106824:6..284+

>mRNA_M-pyrifera_M_contig106824.1465.1 ID=mRNA_M-pyrifera_M_contig106824.1465.1|Name=mRNA_M-pyrifera_M_contig106824.1465.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig106824:6..284+ (Macrocystis pyrifera P11B4 male)
ATCGACATCAACGGAGATCGAGACACGTCTGGAAATACGCTGTTCATCGT
AGCAGCACAAAACGGCAACAAGAGAATCATGAAAGAACTCCTCCGAAAAG
GAGCAGATCCAAACTTGGCAAACGAACGCGGAAACACAGCACTCCATTTC
CTCATCGCATACAACCACCGAGAACTTGCAGATTATCTCATCGAAAAAGG
TGCTATTGACACAGTAACAAACGAAGAAGGATTGACACCATGGGAAGGAT
TAAGCAAAGAAGACGTGGATAGGATTTAGATCGACATCAACGGAGATCGA
GACACGTCTGGAAATACGCTGTTCATCGTAGCAGCACAAAACGGCAACAA
GAGAATCATGAAAGAACTCCTCCGAAAAGGAGCAGATCCAAACTTGGCAA
ACGAACGCGGAAACACAGCACTCCATTTCCTCATCGCATACAACCACCGA
GAACTTGCAGATTATCTCATCGAAAAAGGTGCTATTGACACAGTAACAAA
CGAAGAAGGATTGACACCATGGGAAGGATTAAGCAAAGAAGACGTGGATA
GGATTTAG
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