mRNA_M-pyrifera_M_contig1066.1426.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1066.1426.1
Unique NamemRNA_M-pyrifera_M_contig1066.1426.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1066.1426.1 vs. uniprot
Match: D7FN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN49_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.070e-42
Identity = 85/163 (52.15%), Postives = 109/163 (66.87%), Query Frame = 3 
Query:    3 LSPEEFSRRMAEELGLSRSFVRPIAQSISRQLIDYRRRLPGWVSEGMVAAAAENLQVIDIDVRFRSVVYRDRLEWDVNCLHSSPESFARYTVTDLALPQEMETAIALTIQQQLCKHRVEMTPSTSGNKASTHNPPDTTNTAEDIAGPRLSS-LHPVDQYEFNS 488
            LSP EFSRR   ELG+  SFV+PIAQSI +QLI+Y R+ P W  EG +A A EN+Q + IDVRFRSV++RDRL+WDVNC ++SPE FAR TV DL LPQEME  IALT  QQ+ + R+    ST+ N+ +           +D+ GP +SS L+    YE  +
Sbjct:   39 LSPLEFSRRTCAELGIGVSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTTHQQVSRFRMAAPSSTTNNEDAQF---------KDVEGPCVSSALNSSSLYEVKA 192
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BLAST of mRNA_M-pyrifera_M_contig1066.1426.1 vs. uniprot
Match: A0A485KRD9_9STRA (Aste57867_10851 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRD9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.820e-6
Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = 3 
Query:    3 LSPEEFSRRMAEELGLSRSFVRPIAQSISRQLIDYRRRLPGWVSEGMVAAAAENLQVIDIDVRFRSVVYRDRLEWDVN--CLHSSPESFARYTVTDLALPQEMETAIALTIQQQLCKHR 353
            ++P++F+   + E+ L RS    IA SI RQ     R+ P  V     A    +L  I I V     +++D+ EWD++  C  + P+ FA  T  ++ LP E E+AIA++I++Q+  +R
Sbjct:  220 ITPQQFAALTSAEMNLHRSTQESIALSIVRQF----RQRPSQVPSN--AQEHSSLHPIRIHVETNGYLFQDQFEWDISDDCA-ADPDHFAHVTCLEMNLPPEFESAIAMSIREQVFYYR 331
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1066.1426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN49_ECTSI1.070e-4252.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485KRD9_9STRA3.820e-632.77Aste57867_10851 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1066contigM-pyrifera_M_contig1066:12019..15186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue4.7e-32
Seed eggNOG ortholog2880.D7FN49
KEGG koko:K09530,ko:K11648,ko:K12662
KEGG Pathwayko03040,ko04141,ko04714,ko05225,map03040,map04141,map04714,map05225
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022411,GO:0031323,GO:0031326,GO:0031498,GO:0032984,GO:0032986,GO:0033554,GO:0034641,GO:0034728,GO:0043044,GO:0043170,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.chromatin disassembly
EggNOG OGsKOG1649@1,KOG1649@2759
Ec32 ortholog descriptionSNF5
Ec32 orthologEc-06_008390.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03021,ko03036,ko03041,ko03110,ko04131
Exons3
Model size962
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1066.1426.1prot_M-pyrifera_M_contig1066.1426.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1066 12451..15157 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.1456401-UTR-M-pyrifera_M_contig1066:12018..124501622815576.1456401-UTR-M-pyrifera_M_contig1066:12018..12450Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1066 12019..12450 -
1692277471.1666718-UTR-M-pyrifera_M_contig1066:12018..124501692277471.1666718-UTR-M-pyrifera_M_contig1066:12018..12450Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1066 12019..12450 -
1622815576.199661-UTR-M-pyrifera_M_contig1066:15157..151861622815576.199661-UTR-M-pyrifera_M_contig1066:15157..15186Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1066 15158..15186 -
1692277471.2103639-UTR-M-pyrifera_M_contig1066:15157..151861692277471.2103639-UTR-M-pyrifera_M_contig1066:15157..15186Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1066 15158..15186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.162362-CDS-M-pyrifera_M_contig1066:12450..124721622815576.162362-CDS-M-pyrifera_M_contig1066:12450..12472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1066 12451..12472 -
1692277471.1821144-CDS-M-pyrifera_M_contig1066:12450..124721692277471.1821144-CDS-M-pyrifera_M_contig1066:12450..12472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1066 12451..12472 -
1622815576.1806488-CDS-M-pyrifera_M_contig1066:14230..144391622815576.1806488-CDS-M-pyrifera_M_contig1066:14230..14439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1066 14231..14439 -
1692277471.1917474-CDS-M-pyrifera_M_contig1066:14230..144391692277471.1917474-CDS-M-pyrifera_M_contig1066:14230..14439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1066 14231..14439 -
1622815576.1902885-CDS-M-pyrifera_M_contig1066:14887..151571622815576.1902885-CDS-M-pyrifera_M_contig1066:14887..15157Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1066 14888..15157 -
1692277471.2008317-CDS-M-pyrifera_M_contig1066:14887..151571692277471.2008317-CDS-M-pyrifera_M_contig1066:14887..15157Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1066 14888..15157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1066.1426.1

>prot_M-pyrifera_M_contig1066.1426.1 ID=prot_M-pyrifera_M_contig1066.1426.1|Name=mRNA_M-pyrifera_M_contig1066.1426.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
MAEELGLSRSFVRPIAQSISRQLIDYRRRLPGWVSEGMVAAAAENLQVID
IDVRFRSVVYRDRLEWDVNCLHSSPESFARYTVTDLALPQEMETAIALTI
QQQLCKHRVEMTPSTSGNKASTHNPPDTTNTAEDIAGPRLSSLHPVDQYE
FNSQNWKDHRPAAMKH*
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mRNA from alignment at M-pyrifera_M_contig1066:12019..15186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1066.1426.1 ID=mRNA_M-pyrifera_M_contig1066.1426.1|Name=mRNA_M-pyrifera_M_contig1066.1426.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3168bp|location=Sequence derived from alignment at M-pyrifera_M_contig1066:12019..15186- (Macrocystis pyrifera P11B4 male)
AGTTGTCCCCTGAGGAATTTTCAAGGCGCATGGCTGAAGAACTCGGCCTG
TCACGGAGTTTTGTTCGGCCCATAGCTCAGTCCATAAGTCGACAATTGAT
CGATTATCGACGCAGACTACCTGGATGGGTATCGGAGGGGATGGTCGCGG
CGGCAGCGGAGAACCTCCAAGTGATAGACATCGATGTTCGCTTCAGATCG
GTGGTTTACCGAGATCGCCTTGAATGGGACGTCAACTGCCTTCACAGCAG
CCCGGAGAGCTTCGCCCGCTACACGGTGACAGACCTTGCTTTACCGCAGG
CAAGTATCGCCCGGTGGCCGTGCTACTGTGATATATGTACACGCTGAAAA
ACTCTGACACTATTTGAGTGCGCTTTAACCGGCAGGATCGTCAACGCGTG
CATGGGAATCGGGTTTTGGAGGAGTAGGGAAGTATTGCCTCCAGTTGTTT
GATCCACACATTATTAGATAACGCTGTCGTGTAGTATGTAGGCAGAAAAC
GAGCTGATATGCATGTTAAAGCACCAAGCTTGGGAAGAAAATCGCACCCA
AGTTGTGCACGTTGTGCCGGCTGTACTGGACTGCCAGCTGTTGAGCTGAC
TGCCCCCCGCCTCACCCGTATTACCCTAAGTTCGTAAGGTGGCATGCCGG
TGTGGACCCCCTTCCCGACGTGAGCGCCATGCTGAAAGTGTTGCGACGCT
TTTTGTACACCCGCACCCGCTCGTGTTTGTTTTGTGCCCCTTCGTAGGAG
ATGGAAACAGCCATCGCGTTGACGATACAACAGCAACTTTGCAAGCATCG
CGTGGAAATGACGCCGTCGACTTCGGGAAACAAGGCAAGCACACACAACC
CGCCCGACACAACCAATACAGCCGAGGACATCGCAGGCCCTCGTCTTTCT
TCTCTCCATCCCGTCGACCAGTATGAGTTCAACTCACAAAATTGGAAGGA
CCACAGGTGACTTGCGGAATTCGCCTCGACCTTGTTGTGATCGAAAGAGA
AGCCCATCAATCCCCACCTCCCCTTCATGGTTACACGAGAGTTTGTGTGG
TAAGCGAAGTGGACACGGATCGTATTAGTTTAGAGAAACACGAACCCTGT
TTCCGGTTTGGCTCACCGCATGACTTACTACATGGCCAATGGGTGACGGT
CTATGGTGATACAGTAGTTTCAATAGTTTAAGGCACTAGTAGCTGCAAAG
CTACCTGCCCCGTTGTTCGCAAGGCATGAGATTCCCTGACGAACAGTCAC
GACTAGCAGATACTGCTCTAAGCCATAATCGCGTGAAACATTCTTGATGC
TGGCCAGCATTCTCCGGGACGAGACCTTTCTACCCCCCCCCATATACTGA
CGCTCGAGTTAGAACTTTTGTGCGGGGTGGAGAACCTAAACTCCGCAAAA
GAGGAATGATCGTATCGCGTAGTGTGGTAGTGTGTGCCAGGTATATGGTA
AGGCACCCACGAGGCAGTAACGTAGTAAACCCATTGCCGTTTCTGGAAGA
GGCCACACCCAAAAACAAACACTTCATTCGAAGCTGTCATCCATATGCAA
GCCTGCCTCGCAAGCGGTTCTTAGAAGGATGCAGCTCGCCCTTCATGCGA
CTCGCCCAACACCTCACGGCGCTTCACGCTTAGTGCGAGCAATGTCTGCC
TGGTCGGTGAAAACCCAACGCGCTCCGTCCCGGCATTATAGGGATGCTAG
ATTCTATGTTCATAAGACTATGGTCATGTATGACATGAGTACCCCCTCAC
CCCCTCCCCCAATATGCAGTGCTATCGAGATTTGGTAATGAAAAACCGTG
TCCGACAAGATTTTATCACCCAAAATATCGCTCTCTTGGCGGAGCCTTGG
GGCAACGGTTCGCTGTTACCAAGCCCACACATTTCCTTTGCTGGAGTTGT
CTCGAACGGTGCTCGACGCCGACAGCCAGGTAGCTGTATAGAGTGCCATA
CGCTCATCCAGGATGGAGGTTTCGCGACCCGACGTGTCTCTTAGTCCGAA
CACGGGCGCTGAGATTGTGTGCTTCGTGTGCTGACGTGTAGAAATCTTCA
TCACGAAAATGTTTTTCTTCCGACGTGAAACTATTTCAAAATTGAGTCTG
ACGCTTTGGCCCCATAGAGCCTACGCAGGTCGATCTTGGTGTAAGTAGCT
GCGACGCTTGCGATAAAACCTCATATCATGCTTCATGATAGCCATGGTTT
GCGCGACAGAATCGGTTGATTGTTTCGACCTTCGACGTGCATGCCCTTCT
GGAGCAGTCGTTTTATCACCGTATCACCGGTGTGAAACACTGTCTTCGGC
CCGGACCTGTCGAGCATGACAATCAGTTGCAATGTAGTTAGTTATGTGTC
GAGTCGCTAGACAACATGAAGTTCGTCTCCTTGGTGTCCGTGTCTGACAA
GACCTTTCAACGACAAACCACAAGTGGGTCAAGCTCTCGGCATCGTTGTA
CTGTATTCATAACTTGCGGTAGCGCTTGCTGCATTTTTTTTTTTTCCAGA
ATACGTCGTATGAATTGTCACAAGACTTTCGTCATTATGCTGCAGTTCCA
ACGTGTGTTGAATGCACAGCTAAACTGTAAACGCATGTGTGCAGGACCTC
TATTTCGACTGTGTTCTTTGTGTCGTTTATTGTCTATGGTCCACCTTCTG
ACTTAGCCGTGATGTCGCTCGCTAATCGACATGCCGTGCTCCTTTCTGTG
TCCATGCTATGCAGACCTGCGGCCATGAAGCACTAAAGCTGTGGGGCTGG
ATTGCGCGTCGCCCATCGTGTGTGCCTTGGACATAACCGCTCGCTAGAGC
ATTGAAAGGGCGTAGCCAATGGTGTTGTGTGCTTGTTGGAGACTCTCAGA
ATTTTTAGCTGTTCGCCGTGTTCGGAAGAGAGAGGTGGCTTCGACCAGGA
GTGCAGTTAAATGACAAAAAAAACGTCCTTGCACAGCTGCTCGTTCGATT
GAGCTTTGATGCTTTTGGGGGGGTATTCTATTACAGTACTCTGTGGTTGT
GCAGAAAGTAGACTATCGTTCTAATTTGAACCGAGGTGTACGTGCGTGTA
CCGAGTCAAGGAGCGACAGAATCGACAGTCATGCCAGAAACCGATCGAGG
CCGGAAAAACCGCATACGTTTCCCACAAAGGACACCCACCAATAATCCAC
AAAATACCAAGTCAGTCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1066:12019..15186-

>mRNA_M-pyrifera_M_contig1066.1426.1 ID=mRNA_M-pyrifera_M_contig1066.1426.1|Name=mRNA_M-pyrifera_M_contig1066.1426.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig1066:12019..15186- (Macrocystis pyrifera P11B4 male)
ATGGCTGAAGAACTCGGCCTGTCACGGAGTTTTGTTCGGCCCATAGCTCA
GTCCATAAGTCGACAATTGATCGATTATCGACGCAGACTACCTGGATGGG
TATCGGAGGGGATGGTCGCGGCGGCAGCGGAGAACCTCCAAGTGATAGAC
ATCGATGTTCGCTTCAGATCGGTGGTTTACCGAGATCGCCTTGAATGGGA
CGTCAACTGCCTTCACAGCAGCCCGGAGAGCTTCGCCCGCTACACGGTGA
CAGACCTTGCTTTACCGCAGATGGCTGAAGAACTCGGCCTGTCACGGAGT
TTTGTTCGGCCCATAGCTCAGTCCATAAGTCGACAATTGATCGATTATCG
ACGCAGACTACCTGGATGGGTATCGGAGGGGATGGTCGCGGCGGCAGCGG
AGAACCTCCAAGTGATAGACATCGATGTTCGCTTCAGATCGGTGGTTTAC
CGAGATCGCCTTGAATGGGACGTCAACTGCCTTCACAGCAGCCCGGAGAG
CTTCGCCCGCTACACGGTGACAGACCTTGCTTTACCGCAGGAGATGGAAA
CAGCCATCGCGTTGACGATACAACAGCAACTTTGCAAGCATCGCGTGGAA
ATGACGCCGTCGACTTCGGGAAACAAGGCAAGCACACACAACCCGCCCGA
CACAACCAATACAGCCGAGGACATCGCAGGCCCTCGTCTTTCTTCTCTCC
ATCCCGTCGACCAGTATGAGTTCAACTCACAAAATTGGAAGGACCACAGG
AGATGGAAACAGCCATCGCGTTGACGATACAACAGCAACTTTGCAAGCAT
CGCGTGGAAATGACGCCGTCGACTTCGGGAAACAAGGCAAGCACACACAA
CCCGCCCGACACAACCAATACAGCCGAGGACATCGCAGGCCCTCGTCTTT
CTTCTCTCCATCCCGTCGACCAGTATGAGTTCAACTCACAAAATTGGAAG
GACCACAGACCTGCGGCCATGAAGCACTAAACCTGCGGCCATGAAGCACT
AA
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