mRNA_M-pyrifera_M_contig106542.1416.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106542.1416.1
Unique NamemRNA_M-pyrifera_M_contig106542.1416.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Match: A0A800ADD5_9BACT (DUF5050 domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A800ADD5_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 5.200e-8
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 RFAFTSTRHD-NQEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAF 144
            + AF+S   D N E+Y+ D DGKN+ R+T +PA D++P WSPDGR IAF
Sbjct:   33 QIAFSSEDRDGNDEIYVMDADGKNLRRLTNNPADDLYPVWSPDGRKIAF 81
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BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Match: A0A6N9C9C4_9BACT (DUF5050 domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A6N9C9C4_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.910e-7
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 RFAFTSTRHDNQEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAF 144
            + AF S R  N E+Y+ D DG N  R+T +PA D+ P+WSPDG+ IAF
Sbjct:   32 QIAFVSERDGNYEIYVMDADGVNPRRLTNNPARDLAPSWSPDGKRIAF 79
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BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Match: A0A7C4VTF7_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4VTF7_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 8.360e-7
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 AFTSTRHDN---QEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAF 144
            +FTS R DN   QE+Y+ D +G+N+  VT DPA D  P+WSPDG+ IA+
Sbjct:   95 SFTSVRGDNPDDQEIYLMDSNGENLRNVTNDPARDGTPDWSPDGKLIAW 143
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BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Match: A0A7C0Y1M0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C0Y1M0_9CHLR)

HSP 1 Score: 57.0 bits (136), Expect = 1.360e-6
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 RFAFTSTRHDNQEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAF 144
            R AF STR    ++++ D DG +  R+TG PA D++P WSPDG  IAF
Sbjct:  104 RIAFVSTRDGTPDIFVMDGDGHHQRRLTGHPAADLYPVWSPDGTQIAF 151
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BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Match: A0A7V0UIN4_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V0UIN4_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 2.750e-6
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   10 FTSTRHDNQEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAF 144
            F  TRH   E+Y+ DRDG N+ R+T  P  D  P WSPDG+TI F
Sbjct:  195 FAFTRHREGEIYVMDRDGGNLRRLTNAPNWDGSPAWSPDGKTIFF 239
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BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Match: A0A6I4ZFU1_9CHLR (DUF5050 domain-containing protein n=2 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4ZFU1_9CHLR)

HSP 1 Score: 56.2 bits (134), Expect = 2.910e-6
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    7 AFTSTRHDNQEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAF 144
            AF S R  N  +Y+ + DG +  R+T DPA D  PNWSPDGR IAF
Sbjct:  783 AFHSNRDGNWNIYVMNADGSDQTRLTEDPAADSWPNWSPDGRRIAF 828
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BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Match: A0A2D6CTM7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2D6CTM7_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 3.070e-6
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    4 FAFTSTRHDNQEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAF 144
            FAF S R  N E+Y  D DG+N   V+  P  D  P+WSPDG++IAF
Sbjct:   70 FAFMSGRDGNSEIYTMDADGRNQRNVSNHPGDDSRPDWSPDGKSIAF 116
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BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Match: A0A8I1T5T6_9ACTN (PD40 domain-containing protein n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A8I1T5T6_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 4.040e-6
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 RFAFTSTRHDNQEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAF 144
            R AFT++R  N+E+Y+A+ DG +   +TG+PA D  P++SPDG  IAF
Sbjct:  283 RIAFTASRDGNEEIYVANADGSHPVNLTGNPAKDRSPSFSPDGMKIAF 330
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BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Match: A0A1F2VRS1_9BACT (TolB_N domain-containing protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b TaxID=1797193 RepID=A0A1F2VRS1_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.180e-5
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 AFTSTRHDNQEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAF 144
            A T  + D +E+Y+AD DG N  R+T + AL++ PNWSPDGR+I +
Sbjct:  198 ANTIEKRDVKEIYVADYDGANQRRITINRALNITPNWSPDGRSIVY 243
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BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Match: A0A7Z9UWG7_9BACT (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A7Z9UWG7_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.450e-5
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   31 NQEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAF 144
            N ++Y+ D++GKN+ ++T  P+ D HP WSPDG+ IAF
Sbjct:   90 NNDIYVMDKEGKNLRQLTDHPSDDRHPTWSPDGKQIAF 127
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106542.1416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A800ADD5_9BACT5.200e-855.10DUF5050 domain-containing protein n=1 Tax=Candidat... [more]
A0A6N9C9C4_9BACT1.910e-752.08DUF5050 domain-containing protein n=1 Tax=Candidat... [more]
A0A7C4VTF7_9CHLR8.360e-753.06Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A7C0Y1M0_9CHLR1.360e-650.00Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A7V0UIN4_9BACT2.750e-653.33Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A6I4ZFU1_9CHLR2.910e-654.35DUF5050 domain-containing protein n=2 Tax=Dehaloco... [more]
A0A2D6CTM7_9BACT3.070e-651.06Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]
A0A8I1T5T6_9ACTN4.040e-650.00PD40 domain-containing protein n=1 Tax=Solirubroba... [more]
A0A1F2VRS1_9BACT1.180e-550.00TolB_N domain-containing protein n=1 Tax=Acidobact... [more]
A0A7Z9UWG7_9BACT1.450e-550.00Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106542contigM-pyrifera_M_contig106542:161..625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.54734-CDS-M-pyrifera_M_contig106542:160..6251622815575.54734-CDS-M-pyrifera_M_contig106542:160..625Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106542 161..625 -
1692277470.8471606-CDS-M-pyrifera_M_contig106542:160..6251692277470.8471606-CDS-M-pyrifera_M_contig106542:160..625Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106542 161..625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106542.1416.1prot_M-pyrifera_M_contig106542.1416.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106542 161..625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106542.1416.1

>prot_M-pyrifera_M_contig106542.1416.1 ID=prot_M-pyrifera_M_contig106542.1416.1|Name=mRNA_M-pyrifera_M_contig106542.1416.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
RFAFTSTRHDNQEVYIADRDGKNIERVTGDPALDVHPNWSPDGRTIAFAT
NRWGDLEIALYDVVTQDLRQFTDSPGFDDYPSFSPDGRHIAFTSNRHGHF
DIVIANVSSGLEVSLTNDAAIDNFPTWTPDGRVSYISNRDDGFDLYVQEV
PTLP*
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mRNA from alignment at M-pyrifera_M_contig106542:161..625-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106542.1416.1 ID=mRNA_M-pyrifera_M_contig106542.1416.1|Name=mRNA_M-pyrifera_M_contig106542.1416.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig106542:161..625- (Macrocystis pyrifera P11B4 male)
CGCTTCGCGTTCACCTCCACGCGTCATGACAACCAGGAAGTCTACATTGC
TGACCGAGACGGGAAGAACATCGAGCGCGTAACGGGCGATCCAGCACTGG
ATGTCCATCCCAACTGGTCACCCGACGGACGCACGATCGCCTTCGCCACA
AACCGCTGGGGCGACTTGGAGATTGCGCTGTATGACGTTGTAACTCAAGA
CCTGAGACAGTTCACCGACAGCCCCGGATTCGACGACTATCCGAGCTTTT
CACCAGATGGTCGTCACATTGCATTCACCAGCAACCGTCACGGACACTTC
GACATCGTGATCGCCAATGTCTCCTCTGGACTCGAGGTGTCACTGACCAA
CGATGCAGCGATCGACAACTTCCCGACGTGGACACCTGATGGCCGGGTCT
CCTACATCTCGAATCGGGATGATGGTTTCGATCTGTATGTTCAGGAGGTG
CCAACATTGCCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106542:161..625-

>mRNA_M-pyrifera_M_contig106542.1416.1 ID=mRNA_M-pyrifera_M_contig106542.1416.1|Name=mRNA_M-pyrifera_M_contig106542.1416.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig106542:161..625- (Macrocystis pyrifera P11B4 male)
CGCTTCGCGTTCACCTCCACGCGTCATGACAACCAGGAAGTCTACATTGC
TGACCGAGACGGGAAGAACATCGAGCGCGTAACGGGCGATCCAGCACTGG
ATGTCCATCCCAACTGGTCACCCGACGGACGCACGATCGCCTTCGCCACA
AACCGCTGGGGCGACTTGGAGATTGCGCTGTATGACGTTGTAACTCAAGA
CCTGAGACAGTTCACCGACAGCCCCGGATTCGACGACTATCCGAGCTTTT
CACCAGATGGTCGTCACATTGCATTCACCAGCAACCGTCACGGACACTTC
GACATCGTGATCGCCAATGTCTCCTCTGGACTCGAGGTGTCACTGACCAA
CGATGCAGCGATCGACAACTTCCCGACGTGGACACCTGATGGCCGGGTCT
CCTACATCTCGAATCGGGATGATGGTTTCGATCTGTATGTTCAGGAGGTG
CCAACATTGCCATGACGCTTCGCGTTCACCTCCACGCGTCATGACAACCA
GGAAGTCTACATTGCTGACCGAGACGGGAAGAACATCGAGCGCGTAACGG
GCGATCCAGCACTGGATGTCCATCCCAACTGGTCACCCGACGGACGCACG
ATCGCCTTCGCCACAAACCGCTGGGGCGACTTGGAGATTGCGCTGTATGA
CGTTGTAACTCAAGACCTGAGACAGTTCACCGACAGCCCCGGATTCGACG
ACTATCCGAGCTTTTCACCAGATGGTCGTCACATTGCATTCACCAGCAAC
CGTCACGGACACTTCGACATCGTGATCGCCAATGTCTCCTCTGGACTCGA
GGTGTCACTGACCAACGATGCAGCGATCGACAACTTCCCGACGTGGACAC
CTGATGGCCGGGTCTCCTACATCTCGAATCGGGATGATGGTTTCGATCTG
TATGTTCAGGAGGTGCCAACATTGCCATGA
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