mRNA_M-pyrifera_M_contig106525.1407.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106525.1407.1
Unique NamemRNA_M-pyrifera_M_contig106525.1407.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Match: A0A517Q8M1_9PLAN (Polyribonucleotide nucleotidyltransferase n=9 Tax=Gimesia TaxID=1649453 RepID=A0A517Q8M1_9PLAN)

HSP 1 Score: 376 bits (965), Expect = 2.380e-124
Identity = 197/203 (97.04%), Postives = 201/203 (99.01%), Query Frame = 1 
Query:    1 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNVEIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAGA-EGNGD 606
            TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQE+TGATIDIQDDGTVT+SGGNVE+VEKA+AHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQA A EGNGD
Sbjct:  503 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEETGATIDIQDDGTVTVSGGNVEVVEKAMAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAAAAEGNGD 705
[Close]
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Match: A6CAB9_9PLAN (Polyribonucleotide nucleotidyltransferase n=14 Tax=Planctomycetaceae TaxID=126 RepID=A6CAB9_9PLAN)

HSP 1 Score: 367 bits (941), Expect = 8.750e-121
Identity = 192/202 (95.05%), Postives = 197/202 (97.52%), Query Frame = 1 
Query:    1 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNVEIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAGAEGNGD 606
            TGIQLDLKNDGI E+IIKATLE AKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQE+TGATIDIQDDGTVT+SGGNV +VEKA+AHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAG E NGD
Sbjct:  503 TGIQLDLKNDGINEEIIKATLEQAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEETGATIDIQDDGTVTVSGGNVSVVEKAMAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAG-ESNGD 703
[Close]
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Match: A0A517WZV6_9PLAN (Polyribonucleotide nucleotidyltransferase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WZV6_9PLAN)

HSP 1 Score: 355 bits (910), Expect = 3.770e-116
Identity = 184/202 (91.09%), Postives = 194/202 (96.04%), Query Frame = 1 
Query:    1 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNVEIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAGAEGNGD 606
            TGIQLDLKNDGI E+II+ATLE AK+ARLELLRTMLTAIRRPRAEIS++APRLHQTKINPEKIGLLIGPGGKTIRAIQE+TG TIDIQDDGTVT+SG N  +VEKA+AHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSV+DICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAG E NGD
Sbjct:  503 TGIQLDLKNDGISEEIIRATLEQAKQARLELLRTMLTAIRRPRAEISSFAPRLHQTKINPEKIGLLIGPGGKTIRAIQEETGGTIDIQDDGTVTVSGSNASVVEKAMAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVNDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAG-ESNGD 703
[Close]
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Match: A0A517QW82_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517QW82_9BACT)

HSP 1 Score: 300 bits (769), Expect = 6.940e-95
Identity = 152/202 (75.25%), Postives = 179/202 (88.61%), Query Frame = 1 
Query:    1 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNVEIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAGAEGNGD 606
            TGIQLDLK DGI E IIK TL  A+KAR+ELLR ML+AIRRPR EIS++APRL Q KI+PEKIGLLIGPGGKTIRAIQE++GAT+D++DDGTVTI+  N E  E ALA +EALTEEI+VGRIY+G VSSIK+FGAF+EIAPGKDGLCHISELSDGFVK+V+DICK+GD+L+VKVIAVD+QNRVKLSRKAV+ E++  +G  D
Sbjct:  529 TGIQLDLKIDGISEQIIKDTLVQARKARIELLRVMLSAIRRPRGEISSFAPRLLQIKIDPEKIGLLIGPGGKTIRAIQEESGATLDVEDDGTVTIAANNGEAAEAALARVEALTEEIKVGRIYEGTVSSIKDFGAFVEIAPGKDGLCHISELSDGFVKNVTDICKVGDKLRVKVIAVDEQNRVKLSRKAVMEEESDGDGGDD 730
[Close]
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Match: A0A353ZCU3_9PLAN (Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353ZCU3_9PLAN)

HSP 1 Score: 281 bits (718), Expect = 1.470e-93
Identity = 145/196 (73.98%), Postives = 170/196 (86.73%), Query Frame = 1 
Query:    1 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNVEIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAG 588
            TGIQLDLK DGI E+II+ TLE AK+ARL LLR+ML+AI+RPR EIS +APRL + +I+P KIGLLIGPGGKTIRAIQE+T  T+D+ D G VTISG +   VE A+A +EALTEEI+VG+IY+G VSS+K+FGAFIEI PGKDGLCHISEL+DGFVKSVS+ICK GD++QVKVIAVDDQNRVKLSRKA LAE AG
Sbjct:   17 TGIQLDLKIDGINEEIIRGTLEQAKEARLNLLRSMLSAIQRPRKEISPHAPRLVRRQIDPSKIGLLIGPGGKTIRAIQEETKTTLDVDDSGWVTISGFDAAGVEDAVARVEALTEEIKVGKIYNGTVSSVKDFGAFIEIVPGKDGLCHISELADGFVKSVSEICKEGDKVQVKVIAVDDQNRVKLSRKAALAELAG 212
[Close]
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Match: A0A1P8WDD3_9PLAN (Polyribonucleotide nucleotidyltransferase n=2 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WDD3_9PLAN)

HSP 1 Score: 294 bits (752), Expect = 1.420e-92
Identity = 153/202 (75.74%), Postives = 175/202 (86.63%), Query Frame = 1 
Query:    1 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNVEIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAGAEGNGD 606
            TGIQLDLKN+GI E+II+ATL+ A KAR ELLR ML+ IRRPRA +S  AP+L QT INPEKIGLLIGPGGKTIRAIQE++GATIDI +DGTVTIS  N    + ALA IEALTEEI+ GRIY G V+SIK+FGAFIEIAPGKDGLCHISELSDGFVK+V+D+C +GD L+VKVIAVDDQNRVKLSRKAVLAEQ G +G+G+
Sbjct:  505 TGIQLDLKNEGISEEIIRATLDQALKARKELLREMLSCIRRPRASVSDSAPKLVQTSINPEKIGLLIGPGGKTIRAIQEESGATIDIAEDGTVTISAVNGAAADAALARIEALTEEIQPGRIYSGKVTSIKDFGAFIEIAPGKDGLCHISELSDGFVKNVNDVCNVGDILEVKVIAVDDQNRVKLSRKAVLAEQGGTDGDGE 706
[Close]
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Match: UPI00029A948D (polyribonucleotide nucleotidyltransferase n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029A948D)

HSP 1 Score: 293 bits (751), Expect = 2.090e-92
Identity = 151/194 (77.84%), Postives = 173/194 (89.18%), Query Frame = 1 
Query:    1 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNVEIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQ 582
            TGIQLDLK DGI E+II+ATLE A+KAR+ELL+TMLT+IRRPR EIS  APRL +TKI+P KIGLLIGPGGKTIRAIQE+TGATIDI DDGTV I+    E  E ALA +EA+TEEI+VGR+Y+G VSS+K+FGAFIEIAPGKDGLCHISELS G+VKSV +ICK+GD+LQVKVIA+DDQNRVKLSRKAVLAEQ
Sbjct:  503 TGIQLDLKIDGINEEIIRATLEQARKARIELLKTMLTSIRRPRGEISVNAPRLLRTKIDPAKIGLLIGPGGKTIRAIQEETGATIDITDDGTVMIACTKSEGAEDALARVEAMTEEIKVGRVYNGTVSSVKDFGAFIEIAPGKDGLCHISELSTGYVKSVDEICKVGDKLQVKVIAIDDQNRVKLSRKAVLAEQ 696
[Close]
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Match: A0A7W0MBQ6_9PLAN (Polyribonucleotide nucleotidyltransferase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0MBQ6_9PLAN)

HSP 1 Score: 290 bits (743), Expect = 3.500e-91
Identity = 147/196 (75.00%), Postives = 175/196 (89.29%), Query Frame = 1 
Query:    1 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNVEIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAG 588
            TGIQLDLK  GI   II+ TL+ A+ AR+ELL+ MLTAIRRPR EI+A APRL QTKI+PEKIGLLIGPGGKTIRAIQE TGA+ID+QDDGTVT+S  N E  E A+A IEALTE+I+VGR+Y+G VSSIK+FGAFIEIAPGKDGLCHISEL+DG+VK+V++ICK+GD+++VKVIAVD+QNRVKLSRKAV+AE+AG
Sbjct:  511 TGIQLDLKITGISHRIIRDTLQQARTARIELLKKMLTAIRRPRQEIAASAPRLLQTKIDPEKIGLLIGPGGKTIRAIQEQTGASIDVQDDGTVTVSSANAEGAEAAMARIEALTEDIKVGRVYNGTVSSIKDFGAFIEIAPGKDGLCHISELADGYVKNVNEICKIGDKMKVKVIAVDEQNRVKLSRKAVIAEEAG 706
[Close]
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Match: UPI001F10A1E8 (polyribonucleotide nucleotidyltransferase n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI001F10A1E8)

HSP 1 Score: 290 bits (741), Expect = 5.450e-91
Identity = 149/202 (73.76%), Postives = 176/202 (87.13%), Query Frame = 1 
Query:    1 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNVEIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAGAEGNGD 606
            TGIQLDLKN GI E+I++ATL  A++AR++LL+TMLT IRRPR +IS +APRL Q KI+PEKIGLLIGPGGKTIRA+QE++GA IDIQDDGTVTI+  N E   KALA IEA+TEEI+VGRIY G VSSIK+FGAFIEIAPGKDGLCHISEL+DGFVK+VSD+ K+GD++ VKVIAVD+QNRVKLSRKAV+AEQ   E + D
Sbjct:  505 TGIQLDLKNSGITEEIVRATLTQARQARIQLLKTMLTTIRRPRGDISDFAPRLRQVKIDPEKIGLLIGPGGKTIRAMQENSGAQIDIQDDGTVTIAANNGESAAKALAAIEAMTEEIKVGRIYAGTVSSIKDFGAFIEIAPGKDGLCHISELADGFVKNVSDVVKVGDQIDVKVIAVDEQNRVKLSRKAVVAEQNSDEESDD 706
[Close]
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Match: UPI001988FE6C (Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI001988FE6C)

HSP 1 Score: 289 bits (739), Expect = 1.230e-90
Identity = 148/201 (73.63%), Postives = 174/201 (86.57%), Query Frame = 1 
Query:    1 TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYAPRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNVEIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAGAEGNG 603
            TGIQLDLK  GI E+II+ TLE A+KAR+ELL+TML AIRRPRAEIS YAPRL +TKI+P KIGLLIGPGGKTIRAIQE+TGATIDI DDGTV I+    E  E ALA +EA+TEEI+VGR+Y+G VSS+K+FGAFIEIAPGKDGLCH+SEL+ GFVKSV ++C++GD+LQVKVIA+DDQNRVKLSRKA+L EQ  A  +G
Sbjct:  504 TGIQLDLKIAGINEEIIRKTLEEARKARIELLKTMLAAIRRPRAEISVYAPRLLRTKIDPSKIGLLIGPGGKTIRAIQEETGATIDINDDGTVMIACAKSEGAEDALARVEAMTEEIKVGRVYNGTVSSVKDFGAFIEIAPGKDGLCHVSELAIGFVKSVDEVCRVGDKLQVKVIAIDDQNRVKLSRKALLIEQEQAAQDG 704
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106525.1407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517Q8M1_9PLAN2.380e-12497.04Polyribonucleotide nucleotidyltransferase n=9 Tax=... [more]
A6CAB9_9PLAN8.750e-12195.05Polyribonucleotide nucleotidyltransferase n=14 Tax... [more]
A0A517WZV6_9PLAN3.770e-11691.09Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A517QW82_9BACT6.940e-9575.25Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A353ZCU3_9PLAN1.470e-9373.98Polyribonucleotide nucleotidyltransferase (Fragmen... [more]
A0A1P8WDD3_9PLAN1.420e-9275.74Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
UPI00029A948D2.090e-9277.84polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A7W0MBQ6_9PLAN3.500e-9175.00Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
UPI001F10A1E85.450e-9173.76polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
UPI001988FE6C1.230e-9073.63Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106525contigM-pyrifera_M_contig106525:14..619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score366.7
Seed ortholog evalue7e-99
Seed eggNOG ortholog344747.PM8797T_27120
Preferred namepnp
KEGG rclassRC02795
KEGG koko:K00962
KEGG ReactionR00437,R00438,R00439,R00440
KEGG Pathwayko00230,ko00240,ko03018,map00230,map00240,map03018
KEGG ModuleM00394
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575
EggNOG free text desc.Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
EggNOG OGs2IWXZ@203682,COG1185@1,COG1185@2
EC2.7.7.8
COG Functional cat.J
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.1896803-CDS-M-pyrifera_M_contig106525:13..6191622815575.1896803-CDS-M-pyrifera_M_contig106525:13..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106525 14..619 +
1692277470.6957836-CDS-M-pyrifera_M_contig106525:13..6191692277470.6957836-CDS-M-pyrifera_M_contig106525:13..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106525 14..619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106525.1407.1prot_M-pyrifera_M_contig106525.1407.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106525 14..619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106525.1407.1

>prot_M-pyrifera_M_contig106525.1407.1 ID=prot_M-pyrifera_M_contig106525.1407.1|Name=mRNA_M-pyrifera_M_contig106525.1407.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
TGIQLDLKNDGIGEDIIKATLEAAKKARLELLRTMLTAIRRPRAEISAYA
PRLHQTKINPEKIGLLIGPGGKTIRAIQEDTGATIDIQDDGTVTISGGNV
EIVEKALAHIEALTEEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHIS
ELSDGFVKSVSDICKMGDRLQVKVIAVDDQNRVKLSRKAVLAEQAGAEGN
GD
back to top

mRNA from alignment at M-pyrifera_M_contig106525:14..619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106525.1407.1 ID=mRNA_M-pyrifera_M_contig106525.1407.1|Name=mRNA_M-pyrifera_M_contig106525.1407.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig106525:14..619+ (Macrocystis pyrifera P11B4 male)
ACCGGGATTCAGCTCGACCTGAAAAACGATGGTATTGGTGAAGACATTAT
CAAAGCCACTCTGGAAGCCGCCAAAAAGGCCCGTCTGGAACTGCTGCGAA
CCATGCTTACCGCCATTCGTCGTCCCCGGGCAGAAATCTCTGCCTACGCA
CCACGTCTGCACCAGACCAAGATCAATCCTGAAAAGATTGGTTTGCTCAT
CGGTCCGGGTGGTAAGACAATCCGTGCGATCCAGGAAGACACTGGTGCGA
CTATCGACATTCAGGACGACGGAACCGTTACCATCTCTGGTGGCAATGTA
GAAATCGTTGAGAAAGCTCTGGCTCACATCGAAGCCCTGACCGAAGAGAT
TCGTGTCGGACGGATTTACGATGGTGTGGTCAGTTCGATCAAAGAATTCG
GTGCATTCATTGAGATTGCTCCTGGTAAAGATGGACTCTGCCACATCAGC
GAACTGTCGGATGGGTTCGTGAAATCGGTCAGTGACATCTGTAAAATGGG
CGACCGTCTGCAGGTGAAGGTCATCGCCGTTGATGATCAGAACCGCGTTA
AACTCTCCCGCAAAGCCGTTCTGGCTGAACAGGCTGGTGCGGAAGGAAAT
GGCGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig106525:14..619+

>mRNA_M-pyrifera_M_contig106525.1407.1 ID=mRNA_M-pyrifera_M_contig106525.1407.1|Name=mRNA_M-pyrifera_M_contig106525.1407.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig106525:14..619+ (Macrocystis pyrifera P11B4 male)
ACCGGGATTCAGCTCGACCTGAAAAACGATGGTATTGGTGAAGACATTAT
CAAAGCCACTCTGGAAGCCGCCAAAAAGGCCCGTCTGGAACTGCTGCGAA
CCATGCTTACCGCCATTCGTCGTCCCCGGGCAGAAATCTCTGCCTACGCA
CCACGTCTGCACCAGACCAAGATCAATCCTGAAAAGATTGGTTTGCTCAT
CGGTCCGGGTGGTAAGACAATCCGTGCGATCCAGGAAGACACTGGTGCGA
CTATCGACATTCAGGACGACGGAACCGTTACCATCTCTGGTGGCAATGTA
GAAATCGTTGAGAAAGCTCTGGCTCACATCGAAGCCCTGACCGAAGAGAT
TCGTGTCGGACGGATTTACGATGGTGTGGTCAGTTCGATCAAAGAATTCG
GTGCATTCATTGAGATTGCTCCTGGTAAAGATGGACTCTGCCACATCAGC
GAACTGTCGGATGGGTTCGTGAAATCGGTCAGTGACATCTGTAAAATGGG
CGACCGTCTGCAGGTGAAGGTCATCGCCGTTGATGATCAGAACCGCGTTA
AACTCTCCCGCAAAGCCGTTCTGGCTGAACAGGCTGGTGCGGAAGGAAAT
GGCGACACCGGGATTCAGCTCGACCTGAAAAACGATGGTATTGGTGAAGA
CATTATCAAAGCCACTCTGGAAGCCGCCAAAAAGGCCCGTCTGGAACTGC
TGCGAACCATGCTTACCGCCATTCGTCGTCCCCGGGCAGAAATCTCTGCC
TACGCACCACGTCTGCACCAGACCAAGATCAATCCTGAAAAGATTGGTTT
GCTCATCGGTCCGGGTGGTAAGACAATCCGTGCGATCCAGGAAGACACTG
GTGCGACTATCGACATTCAGGACGACGGAACCGTTACCATCTCTGGTGGC
AATGTAGAAATCGTTGAGAAAGCTCTGGCTCACATCGAAGCCCTGACCGA
AGAGATTCGTGTCGGACGGATTTACGATGGTGTGGTCAGTTCGATCAAAG
AATTCGGTGCATTCATTGAGATTGCTCCTGGTAAAGATGGACTCTGCCAC
ATCAGCGAACTGTCGGATGGGTTCGTGAAATCGGTCAGTGACATCTGTAA
AATGGGCGACCGTCTGCAGGTGAAGGTCATCGCCGTTGATGATCAGAACC
GCGTTAAACTCTCCCGCAAAGCCGTTCTGGCTGAACAGGCTGGTGCGGAA
GGAAATGGCGAC
back to top