mRNA_M-pyrifera_M_contig106520.1406.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106520.1406.1
Unique NamemRNA_M-pyrifera_M_contig106520.1406.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106520.1406.1 vs. uniprot
Match: A0A7Y2AHP7_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2AHP7_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 5.430e-7
Identity = 40/130 (30.77%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  112 FLNAAMAESQPLPWTLTGLGIDEWLGGGDEDGLPTVLVVVGSALDGEGAIRVQSHMEAGGRILFIPDRAGFSEAILERLLKPLGIQGAEP-RFSELDGGRYAGFSWVDFEHPVFQSFREPQYSDFSMVRF 498
            +LN     +     T+T +  D+ +   D    P  LVVVG ++  + A R++ +  AGG++LF+      S+  ++  ++   I GA   +F+E     Y  FS +DF HP+F+   +PQ++DF+ VRF
Sbjct:  276 YLNRVPLNNSRREVTVTAMPPDKLMAVPDSQTTP--LVVVGQSVSTDIAERLKQYAAAGGKLLFVMSER--SDLQMQPAIE--SISGANNVQFTEAKVDDYVMFSQIDFAHPLFEPMSDPQFNDFTKVRF 399          
BLAST of mRNA_M-pyrifera_M_contig106520.1406.1 vs. uniprot
Match: A0A517NBK4_9BACT (VWFA domain-containing protein n=1 Tax=Rubripirellula lacrimiformis TaxID=1930273 RepID=A0A517NBK4_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.440e-6
Identity = 37/101 (36.63%), Postives = 52/101 (51.49%), Query Frame = 1
Query:  196 DEDGLPTVLVVVGSALDGEGAIRVQSHMEAGGRILFIPDRAGFSEAILERLLKPLGIQGAEPRFSELDGGRYAGFSWVDFEHPVFQSFREPQYSDFSMVRF 498
            D D   T LVVV   L+     R+ S+ME GGR+  + DR   +  +   L     + G   R +E     Y   S +DF HPVFQ+  +PQ++DF+ VRF
Sbjct:  539 DWDPKTTPLVVVAMPLESIMTDRLASYMELGGRVWVVLDRPDPASGMAVTLGN---LAGQSIRLTEAKVDDYHMMSKIDFGHPVFQAMSDPQFNDFTKVRF 636          
BLAST of mRNA_M-pyrifera_M_contig106520.1406.1 vs. uniprot
Match: A0A7W5DTQ2_9BACT (VWFA domain-containing protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5DTQ2_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.550e-6
Identity = 52/179 (29.05%), Postives = 84/179 (46.93%), Query Frame = 1
Query:    1 DALSGDNHRYAYYTPEPMR-EIGVLWAMPGAA-PQDVSRFLNAAMAESQPLPWTLTGLGIDEWLGGGD--EDGLPTVLVVVGSALDGEGAIRVQSHMEAGGRILFIPDRAG--FSEAILERLLKPLGIQGAEPRFSELDGGRYAGFSWVDFEHPVFQSFREPQYSDFSMVRFQNFFRID 519
            D +  DN +Y + +PEP   E+G+L   P    P+D   +      E  P    L  + +       D   D +   LVVV  ALD +   R++++ ++GG +L++   A   +   +   L  P  +        E D   YA  S +DF HP+F +  EPQ++DF+ VRF +  R+D
Sbjct:  328 DDVDFDNTQY-FVSPEPRSFEVGMLENEPADLDPRDSLAYY----LERTPFGDALRSVSLKRAKKASDLASDFMTMPLVVVTRALDDDETRRLEAYADSGGTVLYVVTDAEVQWQNTVALALASPSLV------VEEADVTDYAMLSNIDFRHPLFATMAEPQFNDFTKVRFWSHRRLD 495          
BLAST of mRNA_M-pyrifera_M_contig106520.1406.1 vs. uniprot
Match: A0A5C6EK56_9BACT (VWFA domain-containing protein n=1 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6EK56_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 3.480e-6
Identity = 44/166 (26.51%), Postives = 73/166 (43.98%), Query Frame = 1
Query:    1 DALSGDNHRYAYYTPEPMREIGVLWAMPGAAPQDVSRFLNAAMAESQPLPWTLTGLGIDEWLGGGDEDGLPTVLVVVGSALDGEGAIRVQSHMEAGGRILFIPDRAGFSEAILERLLKPLGIQGAEPRFSELDGGRYAGFSWVDFEHPVFQSFREPQYSDFSMVRF 498
            D    DN RY    P   + I  +      A   +  +L  A   +     ++  L I   +   + D L T L+V+   +D + AI ++++   GG+IL + D A   + +   L     I G     SE +   Y  F  +DF  P F+S  +PQ++DF+ +RF
Sbjct:  333 DQCDFDNFRYISIDPPMTQTIAFMGKEAAEARSSLLYYLKRAPLNNPSRTVSVETLAIVAEVA--ELDPLRTPLLVLAQPIDSDFAIALKAYANRGGQILVVMDDAKSIDGMAATLST---ISGDSLSISEAEVRDYQMFGRIDFSDPAFRSMADPQFNDFTKIRF 493          
BLAST of mRNA_M-pyrifera_M_contig106520.1406.1 vs. uniprot
Match: A0A7C7XVH4_9PLAN (VWA domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7XVH4_9PLAN)

HSP 1 Score: 56.2 bits (134), Expect = 4.710e-6
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  214 TVLVVVGS-ALDGEGAI-----RVQSHMEAGGRILFIPDRAGFSEAILERLLKP-LGIQGAEPRFSELDGGRYAGFSWVDFEHPVFQSFREPQYSDFSMVRF 498
            T L+V+GS  LD E         V   +EAG R+++I   A   +A +ER+L P   I+ AEP      GG+YA ++ + F+HP+F     P+YSDF+ +RF
Sbjct:  386 TSLIVIGSDGLDPEMRTDVVWDAVAKAVEAGARVMWIV--ADNDQAAIERVLGPGWNIEAAEPP----GGGKYAMWTAIQFDHPLFSPLENPRYSDFTGIRF 481          
BLAST of mRNA_M-pyrifera_M_contig106520.1406.1 vs. uniprot
Match: A0A5C6ASA0_9BACT (VWFA domain-containing protein n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6ASA0_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.160e-5
Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 1
Query:    1 DALSGDNHRYAYYTPEPMREIGVLWAMPG------AAPQDVSRFLNAAMAESQPLPWTLTGLGIDEWLGGGDEDGLPTVLVVVGSALDGEGAIRVQSHMEAGGRILFIPDRAGF-SEAI-LERLLKPLGIQGAEPRFSELDGGRYAGFSWVDFEHPVFQSFREPQYSDFSMVRF 498
            DA   DN  Y   TP+   EI  L   P       +A + +  +L+        +   +  L  +++   GD D   T LVVV  ALD E A R++ + E GG++  +  +    SEAI L+ LL    +   E   +E+D   Y   + + F  PVF +  +PQ++DF+ VRF
Sbjct:  337 DAQDFDNVCYYAITPQSAAEIIYLGQPPAENLTAESARESLLYYLDRVPLSDARVSVRVVPLRAEQF--NGDTDPKQTPLVVVSEALDLETAQRLKQYAEQGGQVCVVLGQPSTGSEAIGLQTLLDSPELTVTE---AEIDD--YVMLTSIRFSDPVFSAMADPQFNDFTKVRF 503          
BLAST of mRNA_M-pyrifera_M_contig106520.1406.1 vs. uniprot
Match: A0A2D7HK25_9BACT (Alpha-1-antitrypsin n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D7HK25_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.180e-5
Identity = 35/121 (28.93%), Postives = 56/121 (46.28%), Query Frame = 1
Query:  220 LVVVGSALDGEGAIRVQSHMEAGGRILFI------------PDRAGFSEAILERLLKPLGIQGAEP----------------RFSELDGGRYAGFSWVDFEHPVFQSFREPQYSDFSMVRF 498
            L+VV S L  + A++V+++ EAGGR+LF+             D+    +         +G+  +                   F E D   YA  S +DF HP+FQ+  +PQ++DFS +RF
Sbjct:  421 LLVVTSELRPQVAVKVKAYCEAGGRVLFVLSKFLPQATALPGDKPDVEDVDXXXXXXXVGVDSSGQAEEYGATINLISESKFEFREADIADYAMLSRIDFSHPLFQTMADPQFNDFSKIRF 541          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106520.1406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7Y2AHP7_9BACT5.430e-730.77Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A517NBK4_9BACT1.440e-636.63VWFA domain-containing protein n=1 Tax=Rubripirell... [more]
A0A7W5DTQ2_9BACT2.550e-629.05VWFA domain-containing protein n=2 Tax=Rhodopirell... [more]
A0A5C6EK56_9BACT3.480e-626.51VWFA domain-containing protein n=1 Tax=Rubripirell... [more]
A0A7C7XVH4_9PLAN4.710e-638.24VWA domain-containing protein n=1 Tax=Planctomycet... [more]
A0A5C6ASA0_9BACT2.160e-530.46VWFA domain-containing protein n=1 Tax=Stieleria v... [more]
A0A2D7HK25_9BACT2.180e-528.93Alpha-1-antitrypsin n=1 Tax=Rhodopirellula sp. Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106520contigM-pyrifera_M_contig106520:31..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.1530573-CDS-M-pyrifera_M_contig106520:30..5581622815575.1530573-CDS-M-pyrifera_M_contig106520:30..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106520 31..558 -
1692277470.6849766-CDS-M-pyrifera_M_contig106520:30..5581692277470.6849766-CDS-M-pyrifera_M_contig106520:30..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106520 31..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106520.1406.1prot_M-pyrifera_M_contig106520.1406.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106520 31..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106520.1406.1

>prot_M-pyrifera_M_contig106520.1406.1 ID=prot_M-pyrifera_M_contig106520.1406.1|Name=mRNA_M-pyrifera_M_contig106520.1406.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
DALSGDNHRYAYYTPEPMREIGVLWAMPGAAPQDVSRFLNAAMAESQPLP
WTLTGLGIDEWLGGGDEDGLPTVLVVVGSALDGEGAIRVQSHMEAGGRIL
FIPDRAGFSEAILERLLKPLGIQGAEPRFSELDGGRYAGFSWVDFEHPVF
QSFREPQYSDFSMVRFQNFFRIDQED
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mRNA from alignment at M-pyrifera_M_contig106520:31..558-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106520.1406.1 ID=mRNA_M-pyrifera_M_contig106520.1406.1|Name=mRNA_M-pyrifera_M_contig106520.1406.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig106520:31..558- (Macrocystis pyrifera P11B4 male)
GACGCCCTTTCGGGTGACAATCACCGATACGCCTACTACACCCCCGAGCC CATGCGTGAGATTGGCGTTCTTTGGGCCATGCCCGGCGCCGCCCCGCAGG ATGTCTCCCGCTTTCTTAATGCAGCCATGGCCGAGTCTCAGCCCCTCCCC TGGACGCTGACGGGACTCGGGATCGATGAATGGTTGGGCGGCGGTGACGA AGATGGGTTGCCCACCGTGCTGGTGGTGGTAGGGAGCGCCCTCGATGGGG AGGGAGCCATAAGAGTACAATCGCATATGGAGGCGGGTGGACGTATTTTG TTCATTCCCGACCGGGCAGGCTTTTCCGAGGCCATCCTGGAGCGCCTTTT GAAACCCCTGGGTATTCAGGGGGCCGAGCCGCGCTTTTCCGAATTGGATG GAGGGCGCTACGCGGGCTTTTCCTGGGTTGATTTTGAGCATCCCGTATTC CAATCATTTCGTGAGCCCCAATACAGTGACTTTTCCATGGTACGCTTTCA GAATTTCTTTCGGATCGACCAGGAAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106520:31..558-

>mRNA_M-pyrifera_M_contig106520.1406.1 ID=mRNA_M-pyrifera_M_contig106520.1406.1|Name=mRNA_M-pyrifera_M_contig106520.1406.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig106520:31..558- (Macrocystis pyrifera P11B4 male)
GACGCCCTTTCGGGTGACAATCACCGATACGCCTACTACACCCCCGAGCC
CATGCGTGAGATTGGCGTTCTTTGGGCCATGCCCGGCGCCGCCCCGCAGG
ATGTCTCCCGCTTTCTTAATGCAGCCATGGCCGAGTCTCAGCCCCTCCCC
TGGACGCTGACGGGACTCGGGATCGATGAATGGTTGGGCGGCGGTGACGA
AGATGGGTTGCCCACCGTGCTGGTGGTGGTAGGGAGCGCCCTCGATGGGG
AGGGAGCCATAAGAGTACAATCGCATATGGAGGCGGGTGGACGTATTTTG
TTCATTCCCGACCGGGCAGGCTTTTCCGAGGCCATCCTGGAGCGCCTTTT
GAAACCCCTGGGTATTCAGGGGGCCGAGCCGCGCTTTTCCGAATTGGATG
GAGGGCGCTACGCGGGCTTTTCCTGGGTTGATTTTGAGCATCCCGTATTC
CAATCATTTCGTGAGCCCCAATACAGTGACTTTTCCATGGTACGCTTTCA
GAATTTCTTTCGGATCGACCAGGAAGACGACGCCCTTTCGGGTGACAATC
ACCGATACGCCTACTACACCCCCGAGCCCATGCGTGAGATTGGCGTTCTT
TGGGCCATGCCCGGCGCCGCCCCGCAGGATGTCTCCCGCTTTCTTAATGC
AGCCATGGCCGAGTCTCAGCCCCTCCCCTGGACGCTGACGGGACTCGGGA
TCGATGAATGGTTGGGCGGCGGTGACGAAGATGGGTTGCCCACCGTGCTG
GTGGTGGTAGGGAGCGCCCTCGATGGGGAGGGAGCCATAAGAGTACAATC
GCATATGGAGGCGGGTGGACGTATTTTGTTCATTCCCGACCGGGCAGGCT
TTTCCGAGGCCATCCTGGAGCGCCTTTTGAAACCCCTGGGTATTCAGGGG
GCCGAGCCGCGCTTTTCCGAATTGGATGGAGGGCGCTACGCGGGCTTTTC
CTGGGTTGATTTTGAGCATCCCGTATTCCAATCATTTCGTGAGCCCCAAT
ACAGTGACTTTTCCATGGTACGCTTTCAGAATTTCTTTCGGATCGACCAG
GAAGAC
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