mRNA_M-pyrifera_M_contig106510.1403.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106510.1403.1
Unique NamemRNA_M-pyrifera_M_contig106510.1403.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Match: A0A1J4JMU5_9EUKA (Alpha amylase, catalytic domain containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4JMU5_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 1.400e-7
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    7 LPHWRAADVVGSPYAALRNRLARVEVRGRDEGPCSCGAVAPPLQ--GMRLMLDFVPNHTAIDCTSPASARQWLRR 225
            LP W+  DV+GSPYA ++  +  VE+ G +E       V   L+  GM+LMLDFVPNH+A+D     S + +  R
Sbjct:   91 LPDWKEDDVIGSPYAIVKYDV-NVEIGGEEE----LKIVRQELKNRGMKLMLDFVPNHSAVDAEEAVSKKNFYIR 160          
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Match: A0A7J7IEU6_9RHOD (Aamy domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IEU6_9RHOD)

HSP 1 Score: 55.1 bits (131), Expect = 4.950e-7
Identity = 29/67 (43.28%), Postives = 38/67 (56.72%), Query Frame = 1
Query:    4 VLPHWRAADVVGSPYAALRNRLARVEVRGRDEGPCSCGAVAPPLQGMRLMLDFVPNHTAIDCTSPAS 204
            +LP W   DV+GSPYA    R+A  ++ G +        +AP     RL+LDFVPNH A+DC  P S
Sbjct:  192 ILPDWTVEDVIGSPYAIYDYRIA-ADLGGEEALAVFRRRLAPA----RLLLDFVPNHMALDCPWPES 253          
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Match: K9SEL5_9CYAN (Alpha amylase catalytic region n=1 Tax=Pseudanabaena sp. PCC 7367 TaxID=82654 RepID=K9SEL5_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 9.160e-7
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    7 LPHWRAADVVGSPYAALRNRLARVEVRGRDEGPCSCGAVAPPLQ--GMRLMLDFVPNHTAID 186
            LP W++ DVVGSPYA     +A  EV     G  +  A    L   G++LMLDFVPNHTA+D
Sbjct:   84 LPDWQSIDVVGSPYA-----IAGYEVAANLGGNSALAAFRQKLASYGLKLMLDFVPNHTALD 140          
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Match: A0A1H0RRF2_9MICC (Alpha amylase, catalytic domain n=3 Tax=unclassified Arthrobacter TaxID=235627 RepID=A0A1H0RRF2_9MICC)

HSP 1 Score: 53.5 bits (127), Expect = 1.720e-6
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 AVLPHWRAADVVGSPYAALRNRLARVEVRGRDEGPCSCGAVAPPL--QGMRLMLDFVPNHTAID 186
            A LP WRA DVVGSPY  +R+ +    V  R  GP    A    L  +G+RL+LDFVPNH A D
Sbjct:   91 AALPDWRAEDVVGSPYC-VRDYV----VDDRLGGPAGLSAAREALAVRGLRLILDFVPNHVAPD 149          
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Match: UPI001CC761F5 (alpha-amylase family glycosyl hydrolase n=1 Tax=Arthrobacter sp. NicSoilB8 TaxID=2830998 RepID=UPI001CC761F5)

HSP 1 Score: 53.1 bits (126), Expect = 2.350e-6
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 AVLPHWRAADVVGSPYAALRNRLARVEVRGRDEGPCSCGAVAPPL--QGMRLMLDFVPNHTAID 186
            A LP WRA DVVGSPY  +R+ +    V  R  GP    A    L  +G+RL+LDFVPNH A D
Sbjct:  112 AALPDWRAEDVVGSPYC-VRDYV----VDDRLGGPAGLSAAREALAVRGVRLILDFVPNHVAPD 170          
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Match: A0A1G9IEE7_9MICC (Alpha amylase, catalytic domain n=2 Tax=Arthrobacter sp. ov407 TaxID=1761748 RepID=A0A1G9IEE7_9MICC)

HSP 1 Score: 53.1 bits (126), Expect = 2.350e-6
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 AVLPHWRAADVVGSPYAALRNRLARVEVRGRDEGPCSCGAVAPPL--QGMRLMLDFVPNHTAID 186
            A LP WRA DVVGSPY  +R+ +    V  R  GP    A    L  +G+RL+LDFVPNH A D
Sbjct:  112 AALPDWRAEDVVGSPYC-VRDYV----VDDRLGGPAGLSAAREALAVRGVRLILDFVPNHVAPD 170          
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Match: A0A7W0WWZ6_9DELT (Alpha-amylase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0WWZ6_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 3.180e-6
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    7 LPHWRAADVVGSPYAALRNRLARVEVRGRDEGPCSCGAVAPPL--QGMRLMLDFVPNHTAID 186
            LP WR  DV GSPYA     +AR EV     G  +  ++   L  +G+R++LDFVPNH A+D
Sbjct:   69 LPGWREEDVAGSPYA-----IARYEVADEFGGDAALASLRTRLSKRGIRVILDFVPNHVALD 125          
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Match: A0A2V8R1D5_9BACT (Alpha-amylase n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8R1D5_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 3.200e-6
Identity = 34/73 (46.58%), Postives = 40/73 (54.79%), Query Frame = 1
Query:    7 LPHWRAADVVGSPYAALRNRLARVEVRGRDEGPCSCGAVAPPLQGMRLMLDFVPNHTAIDCTSPASARQWLRR 225
            LP +   D+VGSPYA +  R+      G DEG     A    L G+RLMLDFVPNH AID T  A   + L R
Sbjct:   81 LPDFTDEDIVGSPYAIVAYRVD--PALGGDEGLADVRARLSEL-GLRLMLDFVPNHMAIDHTWTAEHPERLVR 150          
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Match: UPI000AAAE4BB (alpha-amylase family glycosyl hydrolase n=1 Tax=Arthrobacter sp. 9MFCol3.1 TaxID=1150398 RepID=UPI000AAAE4BB)

HSP 1 Score: 52.8 bits (125), Expect = 3.210e-6
Identity = 33/66 (50.00%), Postives = 36/66 (54.55%), Query Frame = 1
Query:    1 AVLPHWRAADVVGSPYA----ALRNRLARVEVRGRDEGPCSCGAVAPPLQGMRLMLDFVPNHTAID 186
            A LP WRA DVVGSPY     A  NRL      G  EG  S        +G+RL+LDFVPNH A D
Sbjct:   91 AALPDWRADDVVGSPYCVMDYAADNRL------GGPEG-LSAARAELAARGLRLILDFVPNHVAPD 149          
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Match: I0H1X0_ACTM4 (Putative glycosyl hydrolase n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NBRC 102363 / NCIMB 12654 / NRRL B-3342 / UNCC 431) TaxID=512565 RepID=I0H1X0_ACTM4)

HSP 1 Score: 52.0 bits (123), Expect = 5.990e-6
Identity = 31/73 (42.47%), Postives = 38/73 (52.05%), Query Frame = 1
Query:    7 LPHWRAADVVGSPYAALRNRLARVEVRGRDEGPCSCGAVAPPL--QGMRLMLDFVPNHTAIDCTSPASARQWL 219
            LP +  ADVVGSPY   R R     V  R  GP    A    L  +G+RL+LD+VPNHTA D  +     +W 
Sbjct:   81 LPDFTPADVVGSPYCVRRYR-----VDDRLGGPDGLAAARAELNRRGLRLVLDYVPNHTAPDHPATVEHPEWF 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106510.1403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J4JMU5_9EUKA1.400e-741.33Alpha amylase, catalytic domain containing protein... [more]
A0A7J7IEU6_9RHOD4.950e-743.28Aamy domain-containing protein n=1 Tax=Cyanidiococ... [more]
K9SEL5_9CYAN9.160e-748.39Alpha amylase catalytic region n=1 Tax=Pseudanabae... [more]
A0A1H0RRF2_9MICC1.720e-650.00Alpha amylase, catalytic domain n=3 Tax=unclassifi... [more]
UPI001CC761F52.350e-650.00alpha-amylase family glycosyl hydrolase n=1 Tax=Ar... [more]
A0A1G9IEE7_9MICC2.350e-650.00Alpha amylase, catalytic domain n=2 Tax=Arthrobact... [more]
A0A7W0WWZ6_9DELT3.180e-645.16Alpha-amylase n=1 Tax=Deltaproteobacteria bacteriu... [more]
A0A2V8R1D5_9BACT3.200e-646.58Alpha-amylase n=2 Tax=Acidobacteria bacterium TaxI... [more]
UPI000AAAE4BB3.210e-650.00alpha-amylase family glycosyl hydrolase n=1 Tax=Ar... [more]
I0H1X0_ACTM45.990e-642.47Putative glycosyl hydrolase n=1 Tax=Actinoplanes m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106510contigM-pyrifera_M_contig106510:6..287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.0143545-CDS-M-pyrifera_M_contig106510:5..561622815575.0143545-CDS-M-pyrifera_M_contig106510:5..56Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106510 6..56 +
1692277470.6295097-CDS-M-pyrifera_M_contig106510:5..561692277470.6295097-CDS-M-pyrifera_M_contig106510:5..56Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106510 6..56 +
1622815575.027216-CDS-M-pyrifera_M_contig106510:113..2871622815575.027216-CDS-M-pyrifera_M_contig106510:113..287Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106510 114..287 +
1692277470.6385593-CDS-M-pyrifera_M_contig106510:113..2871692277470.6385593-CDS-M-pyrifera_M_contig106510:113..287Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106510 114..287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106510.1403.1prot_M-pyrifera_M_contig106510.1403.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106510 6..287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106510.1403.1

>prot_M-pyrifera_M_contig106510.1403.1 ID=prot_M-pyrifera_M_contig106510.1403.1|Name=mRNA_M-pyrifera_M_contig106510.1403.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
AVLPHWRAADVVGSPYAALRNRLARVEVRGRDEGPCSCGAVAPPLQGMRL
MLDFVPNHTAIDCTSPASARQWLRR
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mRNA from alignment at M-pyrifera_M_contig106510:6..287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106510.1403.1 ID=mRNA_M-pyrifera_M_contig106510.1403.1|Name=mRNA_M-pyrifera_M_contig106510.1403.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig106510:6..287+ (Macrocystis pyrifera P11B4 male)
GCCGTGCTGCCCCACTGGAGGGCCGCGGACGTCGTGGGCTCGCCGTACGC CGTGCAGGCGCCCTACCGCCTCCTCAAGACGGCCGACTACGACTGCAGCC AACTGCAGGCGCTGCGTAACCGCCTTGCACGCGTGGAAGTGCGGGGGAGG GACGAGGGCCCCTGCTCGTGCGGAGCCGTCGCTCCTCCCCTGCAGGGCAT GCGCCTCATGCTCGACTTCGTGCCCAATCACACTGCCATCGACTGTACGT CACCTGCGTCTGCACGGCAGTGGCTACGGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106510:6..287+

>mRNA_M-pyrifera_M_contig106510.1403.1 ID=mRNA_M-pyrifera_M_contig106510.1403.1|Name=mRNA_M-pyrifera_M_contig106510.1403.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig106510:6..287+ (Macrocystis pyrifera P11B4 male)
GCCGTGCTGCCCCACTGGAGGGCCGCGGACGTCGTGGGCTCGCCGTACGC
CGCCGTGCTGCCCCACTGGAGGGCCGCGGACGTCGTGGGCTCGCCGTACG
CCGCGCTGCGTAACCGCCTTGCACGCGTGGAAGTGCGGGGGAGGGACGAG
GGCCCCTGCTCGTGCGGAGCCGTCGCTCCTCCCCTGCAGGGCATGCGCCT
CATGCTCGACTTCGTGCCCAATCACACTGCCATCGACTGTACGTCACCTG
CGTCTGCACGGCAGTGGCTACGGAGGGCGCTGCGTAACCGCCTTGCACGC
GTGGAAGTGCGGGGGAGGGACGAGGGCCCCTGCTCGTGCGGAGCCGTCGC
TCCTCCCCTGCAGGGCATGCGCCTCATGCTCGACTTCGTGCCCAATCACA
CTGCCATCGACTGTACGTCACCTGCGTCTGCACGGCAGTGGCTACGGAGG
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