mRNA_M-pyrifera_M_contig10649.1400.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10649.1400.1
Unique NamemRNA_M-pyrifera_M_contig10649.1400.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10649.1400.1 vs. uniprot
Match: A0A6H5JWG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG2_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.030e-33
Identity = 73/105 (69.52%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:    1 VCTEAGKTAEGTQGQKRLILEHAAEMYDQMRSGAGVTLVLEAGYASEPG--GDIIVCKA-KYSGEIVGVALDPLPSGPFFRDVGTAGFAKDSSSAATLMDKAKYT 306
            VCTEAG TA+G QGQKRLIL+HA+EMY Q+RSGAG  LVLEAGY    G  G+I VCK  KY+GE VGVALDPLP GPFF+ V   GF  D SSAATLMDK K+T
Sbjct:  130 VCTEAGWTAQGAQGQKRLILDHASEMYSQLRSGAGKMLVLEAGYGPVEGDDGEITVCKGIKYNGERVGVALDPLPDGPFFKGVAKGGFGADRSSAATLMDKKKHT 234
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BLAST of mRNA_M-pyrifera_M_contig10649.1400.1 vs. uniprot
Match: D8LD44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD44_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.220e-33
Identity = 74/105 (70.48%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    1 VCTEAGKTAEGTQGQKRLILEHAAEMYDQMRSGAGVTLVLEAGYASEPG--GDIIVCKA-KYSGEIVGVALDPLPSGPFFRDVGTAGFAKDSSSAATLMDKAKYT 306
            VCTEAG TA+G QGQKRLIL+HA+EMY Q+RSGAG  LVLEAGY S  G  G+I VCK  KY+GE VGVALDPLP GPFF+ V   GF  D SSAATLMDK K+T
Sbjct:  215 VCTEAGWTAQGAQGQKRLILDHASEMYSQLRSGAGKKLVLEAGYGSVEGDDGEITVCKGIKYNGERVGVALDPLPDGPFFKGVAKGGFGADKSSAATLMDKKKHT 319
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10649.1400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWG2_9PHAE1.030e-3369.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD44_ECTSI1.220e-3370.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10649contigM-pyrifera_M_contig10649:1723..6621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000390.1
Exons3
Model size1653
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10649.1400.1prot_M-pyrifera_M_contig10649.1400.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10649 1798..5277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.6894283-UTR-M-pyrifera_M_contig10649:1722..17971622815574.6894283-UTR-M-pyrifera_M_contig10649:1722..1797Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10649 1723..1797 +
1692277470.4260705-UTR-M-pyrifera_M_contig10649:1722..17971692277470.4260705-UTR-M-pyrifera_M_contig10649:1722..1797Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10649 1723..1797 +
1622815574.7302892-UTR-M-pyrifera_M_contig10649:5277..66211622815574.7302892-UTR-M-pyrifera_M_contig10649:5277..6621Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10649 5278..6621 +
1692277470.4629085-UTR-M-pyrifera_M_contig10649:5277..66211692277470.4629085-UTR-M-pyrifera_M_contig10649:5277..6621Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10649 5278..6621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.6997566-CDS-M-pyrifera_M_contig10649:1797..18901622815574.6997566-CDS-M-pyrifera_M_contig10649:1797..1890Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10649 1798..1890 +
1692277470.436049-CDS-M-pyrifera_M_contig10649:1797..18901692277470.436049-CDS-M-pyrifera_M_contig10649:1797..1890Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10649 1798..1890 +
1622815574.7106454-CDS-M-pyrifera_M_contig10649:3986..41171622815574.7106454-CDS-M-pyrifera_M_contig10649:3986..4117Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10649 3987..4117 +
1692277470.445541-CDS-M-pyrifera_M_contig10649:3986..41171692277470.445541-CDS-M-pyrifera_M_contig10649:3986..4117Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10649 3987..4117 +
1622815574.720685-CDS-M-pyrifera_M_contig10649:5267..52771622815574.720685-CDS-M-pyrifera_M_contig10649:5267..5277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10649 5268..5277 +
1692277470.45451-CDS-M-pyrifera_M_contig10649:5267..52771692277470.45451-CDS-M-pyrifera_M_contig10649:5267..5277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10649 5268..5277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10649.1400.1

>prot_M-pyrifera_M_contig10649.1400.1 ID=prot_M-pyrifera_M_contig10649.1400.1|Name=mRNA_M-pyrifera_M_contig10649.1400.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
MYDQMRSGAGVTLVLEAGYASEPGGDIIVCKAKYSGEIVGVALDPLPSGP
FFRDVGTAGFAKDSSSAATLMDKAKYT*
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mRNA from alignment at M-pyrifera_M_contig10649:1723..6621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10649.1400.1 ID=mRNA_M-pyrifera_M_contig10649.1400.1|Name=mRNA_M-pyrifera_M_contig10649.1400.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4899bp|location=Sequence derived from alignment at M-pyrifera_M_contig10649:1723..6621+ (Macrocystis pyrifera P11B4 male)
GTGTGCACGGAAGCGGGGAAGACAGCAGAGGGAACCCAGGGACAAAAACG
CCTGATTCTGGAACACGCGGCTGAGATGTACGATCAAATGAGATCGGGAG
CGGGAGTTACACTTGTCTTGGAGGCGGGGTACGCGTCGGAGCCAGGGGGC
GACATCATCGTGTGCAAGGTCGGTGTTGGGTATTCCTGAAGGGGGAGGAT
CAGGAGGGACAAGAGAGGGGACGCACTCGCGAGATTTTCGATCGCACTGG
TCGCATTGGTCGCGCTGGTTGTCGTTCATACGTGACCTGTGCTGTGGTAG
GGGTTTCACTTGATTATTGTTTTTAGCCCAAACTATTTTCTGACTGACTG
GCCTCCTTACCCGAGGAGCTACGCAACCATTGCTTTCTTCTTCTGATGTG
TATTGCATACCATGACTTGAAAACCCTTTGATGGTGTGTCGGGGCATAGC
CTACAATGCGTTCTCGCCGTCGGTTGTTGGGTGTTGCATCGGGTGTGTAT
TGCATATTATGACTTGCAAACCCACTTGATGGTAGTATACCCTTATCGCA
GCTCGCGCCTCTTGCTGTGTATCTCGCTGTGTACCAAGTACCTCAAGACT
CCGTGTTTCAGGTTTCGCTACCACCTCGCGCTTGTATATTTTTGTAGCTG
CCGTCAAAGGCGTGCGCCGGTCTAAACAAAAACATCACAACCAAATATCG
GAGCTTTTCGGTGGGATCTCCAACTTCAATTTTTTTTGTAGGATCTCCGG
GCTGAAAAGGGTACCTGCCTGGTGTATTATTTGTACCGCTCTATTGATGG
ACGGATTTGTAACGAGCAGTATGTATTGATATTTATGTACGAACGGTCCT
TACATTTGCCGTCCAGCGTGGTACCAGCATATCGTAGGCAGCCGTGCACT
ATCTCTTTCCATCGATGCTGTACGTTGTATCCTTCAGAAATCCCTTGGAA
AGACTCTTTCCCCGCGTTTTGGGCCTATATACCAGGGACCACCGTCATAG
AATATTGCTAAAATAAAAAATATAAGAACTTCCTACTCCTACTGTACAGA
CGTTTCTTGACACATCGGGCAGATAATCGATTCGTACGTTATCACCGAGA
TGTTTAGGAGGGCAGCTAGATAGATATAGATATGTTCCTGATCTGCATGA
TCTGGCTCATGTCGCTGCGTGGGAGCCGTATACCTGGTAGTCTGCAGAAT
TTAGGACAGCTTTACTGTATAGATCCTGTACAACATATATTCTAACGGCA
GGCTATATCGGATCTACGTGATCTACGGTATACAGATAGATAGTGAGCTG
TCCAACGTGTGCAATTACTCCAGGAAACAGAGACCCTATTAATTTGGACT
GTGAGTTGGCTGAGTAGAAGTCGCTAATTTGTTATGTAGTTGGCGTTAGT
TAGCTGGGTATTCTGCTTTGTTTTCGTCTGAGTCGCACGCTTGTGGCTCA
GATCTCGTGTCTTTCGTTTGTCAGGAAGTGCGAAAAAAACTATCCAAGTT
AGTTGGCCTAGTTGGCCTCATTTCGCCACACCCAACTACTCCAACTACTC
CAACTAATAACTAGCTATGCAGTGCAGCCAACCCGCAGCCCTAGGATTCG
TACTTGACCATTAATGGCCGACCCTGCAACTCATGGCTCATCGATCCCCA
TCGCCGTCGTCGGTGCTCGTGCGGATGGCAGTGCCAAGGGCCGTCGGCGT
TTCTTTTTTGTTATGTTTAGTACTGTAAGTAAGATGAAGCCGAATAGCGC
CAGCCGACAGGTCAACTAAAGGGACTACGCCAGCCAACTCTTATCTAGCC
GGGAAGTCCAGCCAAACCCCAACCCTACTCTTTGGAAGTCACAAGGACAC
GAGGACATTTCCACGAAACATAAGGACGGACCTTTGTAGTAGAGGATGGA
CCGCACCAAGTACCGCGGCGTGCTGGGTAGGGGATGGTCCAGTTGCTTTC
CGAACCGCCATAATCCTACAACTTGAACGAAGCGCGCGCAACATGATATT
ACTCATGCCGGTGCGCGCTCACGCTGTTGAAGAGGGTCGCTTTTGCTAGA
CGGTTCAATGGTTGGTAAGGCCGCACATACAGCACATGCAGGTACAGGAC
GCCTATAAGAAAACGAACAATAAGAAAGGCAAGGAGAAACCCTGCCTGGA
CCAGCTTTCCCGTTTCTTACTACTGTAGAATATGTGTCGATTGTTTTGTT
TCCTTGTTCTTGGCCCCAAGTATGATAATGTTAATTTTGCTCCTTGGCGC
GCTTCGACTGGCAGGCGAAGTACTCGGGAGAAATTGTGGGAGTCGCTCTG
GACCCTCTTCCGTCTGGTCCGTTCTTCCGGGACGTGGGAACGGCTGGCTT
TGCCAAGGATTCCTCGTCGGCAGCAACACTCATGGACAAGGCCAAGTAGG
TGCAACTGGGAATCGGCACGGCATAACCCTGTCGTGCTTTCAGCTAGCGA
CCAAAAAAATAATGATGGCTATTATTTGGACTGTCTGAGGGTAGCCTGGC
TGTGGGCCACCGACGACGTGGTAGTTATTCAGTTGGCTGTGTAGGTGTTA
ATAGTTATTATTTATTAATAAGTATATATGTTTTTTGCGCGCGAAAGCTC
TGCGAAGTTCTGCGTCTTTTGCATGAGTGCAGTGACTGCAGTGTTTCGTG
GCTCTAACCTGGGGTGTATCGCAATCGCACGCGCTGTTGTTTTTTCACAT
GAACTCATCGCCAAAAAAATTAGTCGGTGGTCACAGAACAGGCTCCAAGA
ATTCTGGAAGTGGAAGAATACCTCAGGCAGCCTCAGGGCAAGATATGACA
GTACCAGCACCATACGAAAAAGTACGCGCATCGAAACTGAAGCACACCCT
GCACCACAGACAAGAGAAGAAAAAATACGTGAAAACAGCGCACGTGTGCA
CCAGCTGTATACATTGTACGAGTACATGCGCAACCACCGTGCACTTTACC
GACCTCGTGGAGCCATGGCACTGTATCCCATTAGTCCAAGGTACTTCCGT
TTCGGTCCCAAACTACTTGGAGTATGTATTTTCCAGCATATTGTAGCACC
AAATGGGTTAACCAAACTCATGGAACCATGCCAAACCTCGAAACTTCATT
CAGTGGGCACCTCGCAATGTCACTGCTTTGATACACTTTTGCGAAATCCG
CCGTACGCAACCCCGCACGCATGGCGGCGTCTTGACGTACCGCATGGTAG
CATTTGTATAGTGTACTTGACAGTTTTTTACAGCAGCTGACTGTTTCCGT
CCTATTGGTAGCAGCTTGTCAATGTTTTGGAAGTAAACTGGTTGGAAATG
GTGTACGAGTACGTAGGATAACCTTTGCGGTAGGAACAGGGATATTTCAA
CCATCTGGCCGTGTACAAATAGAGCGCCACCTATCTATAGCCGTTGCTCT
TATCCTGCCCCCATCTATAGCCGTTGCTCTTATCCTGCCCCCATCGATCT
GCGTTTTCTGACTCGCCTGCTTCGGAAAGCGCTGATCACTAACGGATTGA
TACATGCCTGCCTCCCTTGCACCCCCCCTTACTGTTTTTCCTCAGGTACA
CTTGAAGCGGGCAAAACGGACCGATAGCAACGATACCATGCCGGTGCGGT
AGGTGGTGGCGCCTGGTCCCAGCGCAAAGCAGAGTGTCACCGCACACACC
CTGCTGTTACACGTGTGTCGCACGTTTCTGGCGCTTGTGTGCCCCGCAGG
CTGGCCCCGTGTGCCATCTTTGACTCTTTCAAGAGTTGAGTTGTCGTGTA
CGGTACGGAAATTACGGACGGTGTCTGTGGACCCTGATAGTTTGGGCCTG
GAGTCGGTGTGCCAGCGTTGACAACTTAGAATTGAATTGTCGTGTACAGC
TCGAAGATTGGAGCCCTGTGGTTTCGGCGCGGAGCCGGGGTGTGATCTCT
GGTATCAAAATGGTTAATATCACTATTAGTATCACGATCGGCGGAAACGC
TATTACCTAGAGTTTTTTTATTTGTGGTGGGACGATGATGATTTTAAAAC
ACAGCGCATTTTGCGGCCTGACATGGTTGTAGGCGCGATTGTATCCATTT
TTACCCCCTGAGAGGCTTGAGAGGCGTAAAAAAAGGACGAAGAAAACGAC
GAGTACAGCATCAGCTGCACACAACATCCTGGCGCTTATATACTGGATGA
GCGAATGATAGGTTGAGTACCGGGGTAACTATGGTGCAAGGAGTTGTACA
GCACGCTCGCAGCATGATGCTCCTTGTGCTGTATACAGCAGGTCGCTTAC
CTCTTGACAACGGCTTAGGATAAATGTTTCAGGGGTCGGGGACTGCTGAT
TGATGGTTGCTGCTGGTTCACCGTTTTCGATCTAGGAAGAAATTCCGAGG
GTGAGATCAAGGCAGGGGCGTAGACCCAGTCTCACCCCTAACCCTGACCC
CAACCCGGACCTAACACGGGCCAGCAACGCTGACTGTACCCTAGACGATT
GATGAGACCGCGGTTCTATTCTTTTTTTCTTGTTTTGTACCTGGCCCCCA
GAACGTCCCGGCCGGTTGAATAAGTATACTTCTTTGTGAGAGGTGTAGTG
GCAGGCACGTGGTGTGAGGGTCTACAAAAAAAAATAGCTCGCGTGCTCTC
GGTGTTAATTGCAGAAGGCATCCGCATCGCATCGGCAGAGTCTTCGAGGT
ATAGTTCTGAGGTTGATTCGTATTAGCGCCGTGAGGACTTGAGAGGCGGT
AAATGGGGTGAAACAAGTGATGATTATAGCAGAGGTATCAGGCACGCGAA
GCAACTCGGCGCTACTGGGTTAGGGGGTGGTATTCTGAGCACCGGACTGC
GCTGCAAGAAGTCTCACAGCACGCTCGCGCCATGAAGATACTCACTACAC
AAAATATGCTGATGCAACCTGCCCCAAAATGCGGTGGAACACATACACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10649:1723..6621+

>mRNA_M-pyrifera_M_contig10649.1400.1 ID=mRNA_M-pyrifera_M_contig10649.1400.1|Name=mRNA_M-pyrifera_M_contig10649.1400.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig10649:1723..6621+ (Macrocystis pyrifera P11B4 male)
ATGTACGATCAAATGAGATCGGGAGCGGGAGTTACACTTGTCTTGGAGGC
GGGGTACGCGTCGGAGCCAGGGGGCGACATCATCGTGTGCAAGATGTACG
ATCAAATGAGATCGGGAGCGGGAGTTACACTTGTCTTGGAGGCGGGGTAC
GCGTCGGAGCCAGGGGGCGACATCATCGTGTGCAAGGCGAAGTACTCGGG
AGAAATTGTGGGAGTCGCTCTGGACCCTCTTCCGTCTGGTCCGTTCTTCC
GGGACGTGGGAACGGCTGGCTTTGCCAAGGATTCCTCGTCGGCAGCAACA
CTCATGGACAAGGCCAAGCGAAGTACTCGGGAGAAATTGTGGGAGTCGCT
CTGGACCCTCTTCCGTCTGGTCCGTTCTTCCGGGACGTGGGAACGGCTGG
CTTTGCCAAGGATTCCTCGTCGGCAGCAACACTCATGGACAAGGCCAAGT
ACACTTGAGTACACTTGA
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