mRNA_M-pyrifera_M_contig106459.1399.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106459.1399.1
Unique NamemRNA_M-pyrifera_M_contig106459.1399.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Match: A0A5A8E390_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E390_CAFRO)

HSP 1 Score: 160 bits (404), Expect = 6.140e-43
Identity = 68/111 (61.26%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   25 VMIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDVFLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEIYAGKEDTMGFECP 357
            VMIGVG+VDG W  G+NYRH+P+    P  G+A L V   AE GRWYK+DV ++W NHT+RVR+DDVT+A + PF G A+RR+G+Y+F AG AWFDE+YAG +DT+GFECP
Sbjct: 1096 VMIGVGVVDGRWAFGSNYRHSPTQ--EPAAGSAALVVTRAAEAGRWYKIDVLISWTNHTFRVRIDDVTVALDVPFTGSAVRRLGMYMFEAGEAWFDEVYAGPDDTLGFECP 1204          
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Match: A0A813CFB8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CFB8_9DINO)

HSP 1 Score: 127 bits (320), Expect = 1.300e-34
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1
Query:   25 VMIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDVFLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEI 318
            VMIGVG+VDG++RH ANYRHTP   L        L    +A L  WYKVD+F+NW N TY+VR++DVT+ R+ PF G A+RRIGLY +HAGVAWFDE+
Sbjct:  100 VMIGVGVVDGSFRHDANYRHTPGVDLPAQSPETVLQRNVQAHL--WYKVDIFINWANSTYKVRINDVTLVRDIPFNGSAVRRIGLYNYHAGVAWFDEV 195          
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Match: A0A7S1CKH0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKH0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.180e-28
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   16 NGDVMIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDVFLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEIYAGKEDTMGFECP 357
            +G  +IGV +VDG+WR+ +NYRH P+     D     +  A  A   +WYKVD+F++W    Y +R+DD+   R   F G+A+RRIG Y FH    + DE+YAG  DTMGFECP
Sbjct:  972 DGAALIGVAVVDGSWRYDSNYRHVPAG--RTDQPQQHV-FARNAAANQWYKVDIFIDWDKKEYLIRLDDIMRVRRVKFIGEAIRRIGFYSFHGSTIYIDEVYAGPADTMGFECP 1082          
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Match: A0A329S493_9STRA (EF-hand domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S493_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.230e-21
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    1 DVGRENGDVMIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDVFLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEIYAGKEDTMGFECPLVERLT 375
            D    N ++MI + +VDG + H  N    P           R     + +  RWYK+DV L+W NHTY +R++DV   +   FQG+++  + L  FHA   W+DEIY GK+  +GF CP V ++T
Sbjct:  830 DAVEANDEIMISIALVDGRFTHEGNTFQWP-----------RQTFQDKIQTDRWYKLDVTLDWLNHTYSIRLNDVLKVKRAKFQGESVAALSLNNFHAMSTWWDEIYVGKDYLLGFSCPWVRQVT 943          
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Match: W2PG33_PHYPN (EF-hand domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PG33_PHYPN)

HSP 1 Score: 98.6 bits (244), Expect = 2.230e-21
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    1 DVGRENGDVMIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDVFLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEIYAGKEDTMGFECPLVERLTSQS 384
            DV   NG++MI + +VDG++ H AN    P           R     + +  RWYK+DV L+W NH Y +R+++V       FQG+++  I L   HA   W+DEIY GK+  +GF CP V+++T  +
Sbjct:  832 DVAATNGEIMISIALVDGSFTHEANTFQWP-----------RHVFQDKIQTDRWYKLDVTLDWVNHMYSIRLNEVLKVSGAKFQGESVAAISLNNLHAMSTWWDEIYVGKDYLLGFTCPWVKKVTDSA 948          
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Match: G5AAW6_PHYSP (EF-hand domain-containing protein n=2 Tax=Phytophthora sojae TaxID=67593 RepID=G5AAW6_PHYSP)

HSP 1 Score: 96.3 bits (238), Expect = 1.440e-20
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   16 NGDVMIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDVFLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEIYAGKEDTMGFECPLVERLTSQSQA 390
            N ++MI + IVDG++ H AN    P           R     + +  RWYK+DV L+WQ HTY +R++DV       FQG+++  + L  FHA   W+DE+Y G +  +GF CP + ++   + A
Sbjct:  857 NDEIMIAIAIVDGSFMHEANTYQWP-----------RRVFQDKVQTDRWYKLDVTLDWQTHTYSIRLNDVLKVNAAAFQGESVAALSLSNFHAMSTWWDELYVGNDYLLGFTCPWIRQVADTAAA 970          
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Match: A0A0P1AK50_PLAHL (Carbohydratebinding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AK50_PLAHL)

HSP 1 Score: 94.0 bits (232), Expect = 9.210e-20
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   22 DVMIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDVFLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEIYAGKEDTMGFECPLVERLTSQS 384
            + MI V ++DG++ H AN    P           R     + +  RWYK+DV L+WQ+HTY +R++DV       FQG+++  + L   HA   W+DEIY G +  +GF CP V+++T ++
Sbjct:  810 EAMISVALIDGSFAHEANTLELP-----------RQFFQDKLQTERWYKLDVTLDWQSHTYSIRLNDVLKVNTAAFQGESVAALSLNNLHAMSTWWDEIYVGVDYLLGFTCPWVQQITDET 919          
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Match: H3GX84_PHYRM (EF-hand domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GX84_PHYRM)

HSP 1 Score: 93.2 bits (230), Expect = 1.720e-19
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 1
Query:    1 DVGRENGDVMIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDVFLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEIYAGKEDTMGFECPLVERLTSQSQA 390
            D    N  +MI + +VDG++ H AN    P    H            + +  RWYK+D+ L+W  HTY +R++DV       FQG ++  + L  FHA   W+DEIY GK+  +GF CP +  +   + A
Sbjct:  871 DAAPANDAIMIAIALVDGSFAHEANTFQWPRHIFHD-----------KVQTDRWYKLDMTLDWNTHTYSIRLNDVLKVAGAAFQGKSVAALSLNNFHAMSTWWDEIYVGKDFLLGFSCPWIRNVPDTAAA 989          
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Match: A0A6A3LHL3_9STRA (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LHL3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.950e-19
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   16 NGDVMIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDVFLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEIYAGKEDTMGFECPLVERLTSQSQA 390
            N ++MI + IVDG++ H AN    P           R  +  + +  RWYK+DV L+WQ HTY +R++DV       FQG ++  + L   HA   W+DEIY G +  +GF CP   ++   + A
Sbjct:  834 NDELMIAIAIVDGSFVHEANSYQWP-----------RHVIQEKVQTDRWYKLDVTLDWQAHTYSIRLNDVLKVNGAAFQGASVAALSLSNLHAMSTWWDEIYVGNDYLLGFSCPWTRQVADTASA 947          
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Match: K3X2K1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2K1_GLOUD)

HSP 1 Score: 88.6 bits (218), Expect = 7.100e-18
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 1
Query:   22 DVMIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDVFLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEIYAGKEDTMGFECPLV------ERLTSQSQA 390
            + MI +GI+DG + H  N    P     P           + +  RWYKVD+F+NW  HTY ++++D+   +   F G ++  + +   HA   W+DEIY GK   MGF CP V         TS SQ+
Sbjct:  732 EFMISIGIIDGVFTHEPNAFQWPRRTFQP-----------KIQPNRWYKVDLFINWYQHTYSIQLNDILKVQNVTFNGVSVGSVSVNNLHAMSTWWDEIYVGKNHLMGFVCPHVIADKRSTAFTSNSQS 849          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106459.1399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A5A8E390_CAFRO6.140e-4361.26Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A813CFB8_9DINO1.300e-3459.18Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S1CKH0_9STRA2.180e-2845.61Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A329S493_9STRA2.230e-2136.80EF-hand domain-containing protein n=2 Tax=Phytopht... [more]
W2PG33_PHYPN2.230e-2136.72EF-hand domain-containing protein n=11 Tax=Phytoph... [more]
G5AAW6_PHYSP1.440e-2035.20EF-hand domain-containing protein n=2 Tax=Phytopht... [more]
A0A0P1AK50_PLAHL9.210e-2035.54Carbohydratebinding protein n=1 Tax=Plasmopara hal... [more]
H3GX84_PHYRM1.720e-1933.85EF-hand domain-containing protein n=1 Tax=Phytopht... [more]
A0A6A3LHL3_9STRA5.950e-1935.20Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
K3X2K1_GLOUD7.100e-1834.11Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106459contigM-pyrifera_M_contig106459:215..604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog67593.Physo137321
Hectar predicted targeting categoryother localisation
EggNOG OGs28K2B@1,2QSGV@2759,3QE25@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.6360493-UTR-M-pyrifera_M_contig106459:214..2411622815574.6360493-UTR-M-pyrifera_M_contig106459:214..241Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106459 215..241 +
1692277470.3950825-UTR-M-pyrifera_M_contig106459:214..2411692277470.3950825-UTR-M-pyrifera_M_contig106459:214..241Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106459 215..241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.6522288-CDS-M-pyrifera_M_contig106459:241..6041622815574.6522288-CDS-M-pyrifera_M_contig106459:241..604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106459 242..604 +
1692277470.410259-CDS-M-pyrifera_M_contig106459:241..6041692277470.410259-CDS-M-pyrifera_M_contig106459:241..604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106459 242..604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106459.1399.1prot_M-pyrifera_M_contig106459.1399.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106459 242..604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106459.1399.1

>prot_M-pyrifera_M_contig106459.1399.1 ID=prot_M-pyrifera_M_contig106459.1399.1|Name=mRNA_M-pyrifera_M_contig106459.1399.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MIGVGIVDGTWRHGANYRHTPSTPLHPDPGAARLGVAHEAELGRWYKVDV
FLNWQNHTYRVRVDDVTMAREEPFQGDALRRIGLYLFHAGVAWFDEIYAG
KEDTMGFECPLVERLTSQSQA
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mRNA from alignment at M-pyrifera_M_contig106459:215..604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106459.1399.1 ID=mRNA_M-pyrifera_M_contig106459.1399.1|Name=mRNA_M-pyrifera_M_contig106459.1399.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig106459:215..604+ (Macrocystis pyrifera P11B4 male)
GATGTTGGAAGGGAGAATGGGGATGTGATGATTGGAGTTGGAATTGTGGA TGGGACATGGCGTCATGGTGCAAACTACCGCCACACTCCATCCACTCCAC TTCACCCAGACCCAGGTGCTGCACGCCTTGGTGTTGCACATGAGGCTGAA CTTGGGAGATGGTACAAGGTGGATGTGTTTTTGAATTGGCAAAATCACAC CTACCGTGTTCGTGTGGATGATGTCACCATGGCTCGAGAAGAACCATTCC AAGGGGATGCATTGCGTCGCATTGGGTTGTATCTCTTTCATGCTGGAGTT GCTTGGTTTGATGAGATTTATGCTGGGAAGGAAGACACGATGGGATTCGA GTGTCCTTTGGTGGAACGTCTCACATCCCAATCCCAAGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106459:215..604+

>mRNA_M-pyrifera_M_contig106459.1399.1 ID=mRNA_M-pyrifera_M_contig106459.1399.1|Name=mRNA_M-pyrifera_M_contig106459.1399.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig106459:215..604+ (Macrocystis pyrifera P11B4 male)
ATGATTGGAGTTGGAATTGTGGATGGGACATGGCGTCATGGTGCAAACTA
CCGCCACACTCCATCCACTCCACTTCACCCAGACCCAGGTGCTGCACGCC
TTGGTGTTGCACATGAGGCTGAACTTGGGAGATGGTACAAGGTGGATGTG
TTTTTGAATTGGCAAAATCACACCTACCGTGTTCGTGTGGATGATGTCAC
CATGGCTCGAGAAGAACCATTCCAAGGGGATGCATTGCGTCGCATTGGGT
TGTATCTCTTTCATGCTGGAGTTGCTTGGTTTGATGAGATTTATGCTGGG
AAGGAAGACACGATGGGATTCGAGTGTCCTTTGGTGGAACGTCTCACATC
CCAATCCCAAGCCATGATTGGAGTTGGAATTGTGGATGGGACATGGCGTC
ATGGTGCAAACTACCGCCACACTCCATCCACTCCACTTCACCCAGACCCA
GGTGCTGCACGCCTTGGTGTTGCACATGAGGCTGAACTTGGGAGATGGTA
CAAGGTGGATGTGTTTTTGAATTGGCAAAATCACACCTACCGTGTTCGTG
TGGATGATGTCACCATGGCTCGAGAAGAACCATTCCAAGGGGATGCATTG
CGTCGCATTGGGTTGTATCTCTTTCATGCTGGAGTTGCTTGGTTTGATGA
GATTTATGCTGGGAAGGAAGACACGATGGGATTCGAGTGTCCTTTGGTGG
AACGTCTCACATCCCAATCCCAAGCC
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