mRNA_M-pyrifera_M_contig106452.1396.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106452.1396.1
Unique NamemRNA_M-pyrifera_M_contig106452.1396.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Match: A0A812TWD4_9DINO (OSBPL5 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TWD4_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 2.460e-14
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   19 ETLGSEPKEDPPPHPSLVAQIISALAPGQDLTRVSIPSWFLEPRSILEKMTDTCMHVDLI 198
            ETLG     D   HPS++  ++ +L PGQDLTRV+IPSWFLE RS+LEKM DT MH DL+
Sbjct:   47 ETLGGAHNTDELEHPSMMGHLVRSLMPGQDLTRVTIPSWFLESRSLLEKMADTLMHPDLL 106          
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Match: A0A7S1CPG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPG8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.680e-13
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 SIPDPEETLGSEPKEDPPPHPSLVAQIISALAPGQDLTRVSIPSWFLEPRSILEKMTDTCMHVDLITE 204
            ++PDP ETLG +  +  P  P+++  ++  L PGQDLTRV+IPS++LE RS+LEK+ D  MH  LI +
Sbjct:   31 TVPDPSETLGGKTDDIEPDAPNVIMHVVKQLMPGQDLTRVTIPSFYLESRSLLEKLADVMMHPQLIID 98          
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Match: D8M297_BLAHO (Uncharacterized protein n=2 Tax=Blastocystis hominis TaxID=12968 RepID=D8M297_BLAHO)

HSP 1 Score: 66.6 bits (161), Expect = 3.190e-11
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 SIPDPEETLGSEPKEDPPPHPSLVAQIISALAPGQDLTRVSIPSWFLEPRSILEKMTDTCMHVDLI 198
            ++ DPE T G E   +P   PSL   I+ +L PGQDLTRV IP +FL PRS+LE + D  MHVDL+
Sbjct:   23 TVEDPENTRGGEITGEPYVQPSLFMHILKSLKPGQDLTRVLIPVFFLAPRSLLEHLGDMLMHVDLL 88          
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Match: A0A196SN89_BLAHN (Oxysterol-binding protein-related protein n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SN89_BLAHN)

HSP 1 Score: 65.9 bits (159), Expect = 6.010e-11
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 SIPDPEETLGSEPKEDPPPHPSLVAQIISALAPGQDLTRVSIPSWFLEPRSILEKMTDTCMHVDLI 198
            ++ DPE T G E   +P   PSL   I+ +L PGQDLTRV IP +FL PRS+LE + D  MH+D++
Sbjct:   23 TVEDPENTRGGEIAGEPYVQPSLFMHILKSLKPGQDLTRVLIPVFFLSPRSLLEHLGDMLMHIDIL 88          
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Match: A0A482RLZ0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RLZ0_9ARCH)

HSP 1 Score: 58.2 bits (139), Expect = 3.040e-8
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   82 ISALAPGQDLTRVSIPSWFLEPRSILEKMTDTCMHVDLI 198
            + +L PGQDLT V+IP++FLEPRS+LE+M DT MH DL+
Sbjct:   91 VRSLMPGQDLTSVTIPAFFLEPRSLLERMADTLMHPDLL 129          
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Match: A0A8J9TZU5_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9TZU5_BRAAE)

HSP 1 Score: 54.3 bits (129), Expect = 7.350e-7
Identity = 22/48 (45.83%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   58 HPSLVAQIISALAPGQDLTRVSIPSWFLEPRSILEKMTDTCMHVDLIT 201
            H SL+  I+  + PG DL++V +P++ LEPRS L+K++D+  HVD++T
Sbjct:  335 HKSLIWYIVKQVRPGMDLSKVVLPTFILEPRSFLDKLSDSYYHVDILT 382          
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Match: N6UQU2_DENPD (Oxysterol-binding protein (Fragment) n=6 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6UQU2_DENPD)

HSP 1 Score: 54.3 bits (129), Expect = 7.350e-7
Identity = 22/49 (44.90%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   58 HPSLVAQIISALAPGQDLTRVSIPSWFLEPRSILEKMTDTCMHVDLITE 204
            H SL+  +I  + PG DL++V +P++ LEPRS L+K++D+  HVD++T+
Sbjct:  343 HKSLIWYLIRQVRPGMDLSKVVLPTFILEPRSFLDKLSDSYYHVDILTQ 391          
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Match: A0A7S1L794_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1L794_NEODS)

HSP 1 Score: 53.9 bits (128), Expect = 9.790e-7
Identity = 24/49 (48.98%), Postives = 41/49 (83.67%), Query Frame = 1
Query:   64 SLVAQIISA--LAPGQDLTRVSIPSWFLEPRSILEKMTDTCMHVDLITE 204
            SL+ Q+ISA  L+ G DL++V++P++ LEPRS+LEK++DT +H +++T+
Sbjct:   43 SLLLQLISANGLSMGMDLSKVALPTFILEPRSLLEKLSDTVIHPEILTD 91          
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Match: A0A0T6BHB0_9SCAR (Oxysterol-binding protein (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6BHB0_9SCAR)

HSP 1 Score: 53.5 bits (127), Expect = 1.220e-6
Identity = 21/48 (43.75%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   58 HPSLVAQIISALAPGQDLTRVSIPSWFLEPRSILEKMTDTCMHVDLIT 201
            H SL+  ++  + PG DL++V +P++ LEPRS L+K+TD+  HVD+++
Sbjct:   43 HKSLIWYLVKQVRPGMDLSKVVLPTFILEPRSFLDKLTDSYYHVDILS 90          
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Match: A0A183VER1_TOXCA (PH domain-containing protein n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A183VER1_TOXCA)

HSP 1 Score: 53.5 bits (127), Expect = 1.330e-6
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   64 SLVAQIISALAPGQDLTRVSIPSWFLEPRSILEKMTDTCMHVDLITE 204
            SLV  ++  + PG DL++V++P++ LEPRS LEK+ D   HVDL+ E
Sbjct:  345 SLVWSLLKQIRPGMDLSKVTLPTFILEPRSFLEKLADFYYHVDLLKE 391          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106452.1396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812TWD4_9DINO2.460e-1460.00OSBPL5 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A7S1CPG8_9STRA7.680e-1348.53Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D8M297_BLAHO3.190e-1153.03Uncharacterized protein n=2 Tax=Blastocystis homin... [more]
A0A196SN89_BLAHN6.010e-1150.00Oxysterol-binding protein-related protein n=2 Tax=... [more]
A0A482RLZ0_9ARCH3.040e-864.10Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J9TZU5_BRAAE7.350e-745.83Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
N6UQU2_DENPD7.350e-744.90Oxysterol-binding protein (Fragment) n=6 Tax=Dendr... [more]
A0A7S1L794_NEODS9.790e-748.98Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A0T6BHB0_9SCAR1.220e-643.75Oxysterol-binding protein (Fragment) n=1 Tax=Oryct... [more]
A0A183VER1_TOXCA1.330e-648.94PH domain-containing protein n=2 Tax=Toxocara cani... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106452contigM-pyrifera_M_contig106452:384..590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.5237741-CDS-M-pyrifera_M_contig106452:383..5901622815574.5237741-CDS-M-pyrifera_M_contig106452:383..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106452 384..590 +
1692277470.3576493-CDS-M-pyrifera_M_contig106452:383..5901692277470.3576493-CDS-M-pyrifera_M_contig106452:383..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106452 384..590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106452.1396.1prot_M-pyrifera_M_contig106452.1396.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106452 384..590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106452.1396.1

>prot_M-pyrifera_M_contig106452.1396.1 ID=prot_M-pyrifera_M_contig106452.1396.1|Name=mRNA_M-pyrifera_M_contig106452.1396.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
SIPDPEETLGSEPKEDPPPHPSLVAQIISALAPGQDLTRVSIPSWFLEPR
SILEKMTDTCMHVDLITE*
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mRNA from alignment at M-pyrifera_M_contig106452:384..590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106452.1396.1 ID=mRNA_M-pyrifera_M_contig106452.1396.1|Name=mRNA_M-pyrifera_M_contig106452.1396.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig106452:384..590+ (Macrocystis pyrifera P11B4 male)
AGTATCCCAGATCCCGAGGAAACCCTTGGCAGCGAGCCAAAAGAAGACCC TCCGCCGCATCCATCGCTCGTGGCGCAAATTATCAGCGCCCTGGCACCAG GCCAAGACCTTACGCGGGTGAGCATCCCGTCATGGTTCCTGGAACCCCGC TCAATCCTCGAGAAAATGACCGATACGTGTATGCACGTTGATCTCATCAC CGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106452:384..590+

>mRNA_M-pyrifera_M_contig106452.1396.1 ID=mRNA_M-pyrifera_M_contig106452.1396.1|Name=mRNA_M-pyrifera_M_contig106452.1396.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig106452:384..590+ (Macrocystis pyrifera P11B4 male)
AGTATCCCAGATCCCGAGGAAACCCTTGGCAGCGAGCCAAAAGAAGACCC
TCCGCCGCATCCATCGCTCGTGGCGCAAATTATCAGCGCCCTGGCACCAG
GCCAAGACCTTACGCGGGTGAGCATCCCGTCATGGTTCCTGGAACCCCGC
TCAATCCTCGAGAAAATGACCGATACGTGTATGCACGTTGATCTCATCAC
CGAGTAAAGTATCCCAGATCCCGAGGAAACCCTTGGCAGCGAGCCAAAAG
AAGACCCTCCGCCGCATCCATCGCTCGTGGCGCAAATTATCAGCGCCCTG
GCACCAGGCCAAGACCTTACGCGGGTGAGCATCCCGTCATGGTTCCTGGA
ACCCCGCTCAATCCTCGAGAAAATGACCGATACGTGTATGCACGTTGATC
TCATCACCGAGTAA
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