mRNA_M-pyrifera_M_contig106447.1393.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106447.1393.1
Unique NamemRNA_M-pyrifera_M_contig106447.1393.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Match: A0A7S2W6M0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6M0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.580e-52
Identity = 75/106 (70.75%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 EETPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLKRDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAALFTSVHA 318
            EETPY  G FH+KLV+G +YP APP+G+F+T I+HPNVS  GEICVNTLKRDW+ D ++SH+L VIRCLLIVPFPESSLN+EAGKLFME+Y+E+ RRA L T +HA
Sbjct:   59 EETPYASGTFHIKLVLGHDYPQAPPRGFFLTKIYHPNVSAKGEICVNTLKRDWSADVSLSHVLQVIRCLLIVPFPESSLNDEAGKLFMESYEEYCRRAKLLTRLHA 164
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BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Match: A0A812N0Y5_9DINO (Ube2s-b protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N0Y5_9DINO)

HSP 1 Score: 172 bits (436), Expect = 4.790e-52
Identity = 72/106 (67.92%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 EETPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLKRDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAALFTSVHA 318
            E+TPY GGKF +KLV+G EYPSAPPKGYF+T IFHPN+S+ G+ICVNTLKRDW    ++SH+L VIRCLLIVPFPESSLN++AG+LFM++YD++ ++A+L T +HA
Sbjct:   48 EDTPYFGGKFRVKLVLGDEYPSAPPKGYFMTKIFHPNISDGGDICVNTLKRDWKTSNSLSHVLQVIRCLLIVPFPESSLNDDAGRLFMDSYDDYAKKASLLTKIHA 153
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BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Match: A0A7S2WL03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL03_9STRA)

HSP 1 Score: 172 bits (436), Expect = 6.600e-52
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 EETPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLKRDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAALFTSVHA 318
            EETPY GG F +KLV+G +YP APP+G+F+T IFHPNVS +G+ICVNTLK+DW+   T+SHILAVIRCLLIVPFPESSLN+EAGKLFME+YD++  RA L T VHA
Sbjct:   70 EETPYFGGTFRMKLVLGQDYPQAPPRGFFLTKIFHPNVSNNGDICVNTLKKDWSQTVTLSHILAVIRCLLIVPFPESSLNDEAGKLFMESYDDYAERARLMTQVHA 175
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BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Match: F0YJE8_AURAN (UBC core domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJE8_AURAN)

HSP 1 Score: 168 bits (426), Expect = 8.570e-52
Identity = 72/104 (69.23%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:    7 TPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLKRDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAALFTSVHA 318
            TPY GG F LKLV+G ++PSAPP+G+F+T IFHPN++ +G+ICVNTLKRDW+ D T+SH+L VIRCLLIVPFPESSLN+EAGKLFM +YDE+  RA L+T +HA
Sbjct:   40 TPYEGGTFRLKLVLGSDFPSAPPRGFFLTKIFHPNIAANGDICVNTLKRDWSSDVTLSHVLQVIRCLLIVPFPESSLNDEAGKLFMTSYDEYAARARLYTDLHA 143
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BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Match: A0A8J2SRP1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRP1_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.590e-51
Identity = 75/106 (70.75%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 EETPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLKRDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAALFTSVHA 318
            E TPY+G  F LKLVIG E+PSAPP+G+F+T IFHPNV+ +G+ICVNTLKRDW P+TT+SHIL VIRCLLIVPFPESSLN+EAGKLFM +Y+++ +RA L T +HA
Sbjct:   49 EGTPYSGAVFRLKLVIGSEFPSAPPRGFFLTKIFHPNVATNGDICVNTLKRDWKPETTLSHILQVIRCLLIVPFPESSLNDEAGKLFMTSYEQYAQRARLMTDLHA 154
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BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Match: A0A813CYA8_9DINO (UBC22 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CYA8_9DINO)

HSP 1 Score: 169 bits (428), Expect = 3.500e-51
Identity = 71/106 (66.98%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 EETPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLKRDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAALFTSVHA 318
            E TPY GG+F +KL++G +YPSAPPKG F+T I+HPN+S +G+ICVNTLKRDW P+  ++H+L V+RCLLIVPFPESSLN++AG+LFME+YDEF RRA L T +HA
Sbjct:   39 ERTPYEGGEFRVKLMLGADYPSAPPKGVFLTKIYHPNISTAGDICVNTLKRDWKPEIGLAHVLQVVRCLLIVPFPESSLNDDAGRLFMESYDEFARRAKLMTGIHA 144
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BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Match: A0A5A8DBG2_CAFRO (UBC core domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DBG2_CAFRO)

HSP 1 Score: 169 bits (428), Expect = 2.860e-50
Identity = 71/106 (66.98%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 EETPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLKRDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAALFTSVHA 318
            E TPY GG+F +KL++G +YPSAPPKG F+T I+HPN+S +G+ICVNTLKRDW P+  ++H+L V+RCLLIVPFPESSLN++AG+LFME+YDEF RRA L T +HA
Sbjct:   47 ERTPYEGGEFRVKLMLGADYPSAPPKGVFLTKIYHPNISTAGDICVNTLKRDWKPEIGLAHVLQVVRCLLIVPFPESSLNDDAGRLFMESYDEFARRAKLMTGIHA 152
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BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Match: A0A4D9CPA5_9STRA (UBC core domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPA5_9STRA)

HSP 1 Score: 167 bits (422), Expect = 8.430e-50
Identity = 72/109 (66.06%), Postives = 92/109 (84.40%), Query Frame = 1 
Query:    1 EETPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLKRDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAALFTSVHAGGK 327
            E+TPY  G FH+KLV+  ++P++PP+GYF+T I+HPNVS +G+ICVNTLKRDW+P  T++H+L VIRCLLIVPFPESSLN+EAGK FME+Y ++ RRA L TSVHA  K
Sbjct:   51 EDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARRK 159
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BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Match: A0A7S3JSL8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSL8_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.030e-49
Identity = 71/105 (67.62%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    4 ETPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLKRDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAALFTSVHA 318
            +TPY  G F LKLV+G ++P APP+G+F+T I+HPN++ +G+ICVNTLKRDWTP  T+SH+L VIRCLLIVPFPES+LN+EAG+LFME+YDE+  RA L TSVHA
Sbjct:   50 DTPYECGIFKLKLVLGSDFPEAPPRGFFLTKIYHPNIAANGDICVNTLKRDWTPSVTLSHVLQVIRCLLIVPFPESALNDEAGRLFMESYDEYASRAKLMTSVHA 154
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BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Match: A0A482UTM4_9ARCH (Ubiquitin-conjugating enzyme E2 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UTM4_9ARCH)

HSP 1 Score: 166 bits (419), Expect = 1.090e-49
Identity = 73/106 (68.87%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 EETPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLKRDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAALFTSVHA 318
            EETP+ GG+F +KLVI  +YP++PPKGYF+T I+HPNVS +GEICVNTLK+DW+   T+ HIL VIRCLLIVPFPESSLNEEAGK FME+Y++F  RA + T VHA
Sbjct:   73 EETPFYGGRFRMKLVISEDYPNSPPKGYFLTRIYHPNVSPTGEICVNTLKKDWSSSVTLKHILQVIRCLLIVPFPESSLNEEAGKQFMESYEDFAARARIMTEVHA 178
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106447.1393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2W6M0_9STRA3.580e-5270.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812N0Y5_9DINO4.790e-5267.92Ube2s-b protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
A0A7S2WL03_9STRA6.600e-5271.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YJE8_AURAN8.570e-5269.23UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A8J2SRP1_9STRA1.590e-5170.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A813CYA8_9DINO3.500e-5166.98UBC22 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A5A8DBG2_CAFRO2.860e-5066.98UBC core domain-containing protein n=3 Tax=Cafeter... [more]
A0A4D9CPA5_9STRA8.430e-5066.06UBC core domain-containing protein n=2 Tax=Monodop... [more]
A0A7S3JSL8_9STRA1.030e-4967.62Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A482UTM4_9ARCH1.090e-4968.87Ubiquitin-conjugating enzyme E2 n=1 Tax=archaeon T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106447contigM-pyrifera_M_contig106447:202..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue8.8e-40
Seed eggNOG ortholog44056.XP_009040532.1
Preferred nameUBE2S
KEGG koko:K10583,ko:K13764,ko:K14292
KEGG Pathwayko03013,ko04120,ko04744,map03013,map04120,map04744
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010458,GO:0010498,GO:0010604,GO:0010992,GO:0010994,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022607,GO:0030163,GO:0031145,GO:0031323,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032991,GO:0034622,GO:0035519,GO:0036211,GO:0042592,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044314,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051258,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0060255,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070534,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0080090,GO:0085020,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903047,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:1990234
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0423@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.409915-CDS-M-pyrifera_M_contig106447:201..5281622815574.409915-CDS-M-pyrifera_M_contig106447:201..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106447 202..528 -
1692277470.2986195-CDS-M-pyrifera_M_contig106447:201..5281692277470.2986195-CDS-M-pyrifera_M_contig106447:201..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106447 202..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106447.1393.1prot_M-pyrifera_M_contig106447.1393.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106447 202..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106447.1393.1

>prot_M-pyrifera_M_contig106447.1393.1 ID=prot_M-pyrifera_M_contig106447.1393.1|Name=mRNA_M-pyrifera_M_contig106447.1393.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
EETPYTGGKFHLKLVIGGEYPSAPPKGYFVTSIFHPNVSESGEICVNTLK
RDWTPDTTISHILAVIRCLLIVPFPESSLNEEAGKLFMENYDEFTRRAAL
FTSVHAGGK
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mRNA from alignment at M-pyrifera_M_contig106447:202..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106447.1393.1 ID=mRNA_M-pyrifera_M_contig106447.1393.1|Name=mRNA_M-pyrifera_M_contig106447.1393.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig106447:202..528- (Macrocystis pyrifera P11B4 male)
GAGGAGACACCGTATACAGGGGGGAAATTCCATTTGAAACTGGTGATTGG
AGGAGAGTATCCTTCTGCGCCTCCGAAAGGATATTTTGTGACGTCGATTT
TTCACCCCAACGTATCGGAAAGTGGCGAAATTTGCGTCAATACGCTGAAA
CGAGACTGGACGCCTGATACTACCATTTCCCACATCTTGGCAGTGATTCG
GTGCCTCTTAATTGTACCATTTCCAGAGTCCAGCTTGAATGAGGAAGCAG
GGAAGTTGTTTATGGAGAATTATGATGAGTTCACCAGAAGAGCAGCCTTG
TTCACTTCGGTTCACGCTGGAGGGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106447:202..528-

>mRNA_M-pyrifera_M_contig106447.1393.1 ID=mRNA_M-pyrifera_M_contig106447.1393.1|Name=mRNA_M-pyrifera_M_contig106447.1393.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig106447:202..528- (Macrocystis pyrifera P11B4 male)
GAGGAGACACCGTATACAGGGGGGAAATTCCATTTGAAACTGGTGATTGG
AGGAGAGTATCCTTCTGCGCCTCCGAAAGGATATTTTGTGACGTCGATTT
TTCACCCCAACGTATCGGAAAGTGGCGAAATTTGCGTCAATACGCTGAAA
CGAGACTGGACGCCTGATACTACCATTTCCCACATCTTGGCAGTGATTCG
GTGCCTCTTAATTGTACCATTTCCAGAGTCCAGCTTGAATGAGGAAGCAG
GGAAGTTGTTTATGGAGAATTATGATGAGTTCACCAGAAGAGCAGCCTTG
TTCACTTCGGTTCACGCTGGAGGGAAGGAGGAGACACCGTATACAGGGGG
GAAATTCCATTTGAAACTGGTGATTGGAGGAGAGTATCCTTCTGCGCCTC
CGAAAGGATATTTTGTGACGTCGATTTTTCACCCCAACGTATCGGAAAGT
GGCGAAATTTGCGTCAATACGCTGAAACGAGACTGGACGCCTGATACTAC
CATTTCCCACATCTTGGCAGTGATTCGGTGCCTCTTAATTGTACCATTTC
CAGAGTCCAGCTTGAATGAGGAAGCAGGGAAGTTGTTTATGGAGAATTAT
GATGAGTTCACCAGAAGAGCAGCCTTGTTCACTTCGGTTCACGCTGGAGG
GAAG
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