mRNA_M-pyrifera_M_contig106437.1391.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106437.1391.1
Unique NamemRNA_M-pyrifera_M_contig106437.1391.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Match: A0A2E7KG49_9PLAN (bpX4 domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KG49_9PLAN)

HSP 1 Score: 233 bits (595), Expect = 2.610e-76
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 MSSFPIFLESLFDDGHVLVPEIESLQEDELLNAREVIRNFEKLYRLELPREIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDLFRL 351
            MSSFPIFLESLFDDGHVLVPEIESLQEDELLNAREVIRNFEKLYRLELPREIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDLFRL
Sbjct:    1 MSSFPIFLESLFDDGHVLVPEIESLQEDELLNAREVIRNFEKLYRLELPREIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDLFRL 117
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BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Match: A0A518A3F0_9PLAN (bpX4 domain-containing protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A3F0_9PLAN)

HSP 1 Score: 163 bits (412), Expect = 1.730e-48
Identity = 79/117 (67.52%), Postives = 93/117 (79.49%), Query Frame = 1 
Query:    1 MSSFPIFLESLFDDGHVLVPEIESLQEDELLNAREVIRNFEKLYRLELPREIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDLFRL 351
            MS F  FL SLF+DGHVLVPEIE   E+EL   REV+ +FE  YRL LP  +PS D+ L+E+AAVLFYRACQF VLR+ PPQQ+DEE + +Q  PDTPE+HYAVD+VFRFLPDLFRL
Sbjct:    1 MSYFSTFLSSLFEDGHVLVPEIEPFSEEELSAGREVLCDFEAQYRLALPGGMPSFDLALSEQAAVLFYRACQFAVLRDTPPQQIDEEFSAMQKLPDTPEAHYAVDLVFRFLPDLFRL 117
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BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Match: A0A517RCS7_9PLAN (bpX4 domain-containing protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RCS7_9PLAN)

HSP 1 Score: 132 bits (331), Expect = 2.210e-36
Identity = 61/117 (52.14%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:    1 MSSFPIFLESLFDDGHVLVPEIESLQEDELLNAREVIRNFEKLYRLELPREIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDLFRL 351
            MS++  F  SLF+DG V VPEI  L + E+  A E++ +FEK YRLE+P E+P   +  A+ AA  F+RACQF V R+APPQ +D E   ++   DTP++HY+VD++FRFLPDLFRL
Sbjct:    1 MSNYAYFFSSLFEDGIVHVPEIGELSDSEIQTADEILVDFEKQYRLEMPLEMPPFSVPDAQNAAYCFFRACQFAVSRDAPPQLIDSEFQRLEELTDTPQTHYSVDLIFRFLPDLFRL 117
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BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Match: A0A6I6A7L9_9PLAN (bpX4 domain-containing protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6A7L9_9PLAN)

HSP 1 Score: 103 bits (256), Expect = 1.050e-25
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:  196 LFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDLFRL 351
            +FYRACQFVV+RNAPPQQLDEEL EIQ FPDTPESHYAVD+VFRFLPDLFRL
Sbjct:    1 MFYRACQFVVMRNAPPQQLDEELKEIQYFPDTPESHYAVDLVFRFLPDLFRL 52
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BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Match: UPI001E527461 (hypothetical protein n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E527461)

HSP 1 Score: 82.4 bits (202), Expect = 5.040e-17
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:   10 FPIFLESLFDDGHVLVPEIESLQEDELLNAREVIRNFEKLYRLELPREIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDL 342
            F  FL  LF +G V  P + ++ E ELL    V+   E L+RL+ P   PS D+T     AV  +RACQFV+ R A    ++EEL      P TP   Y+VD+ FR+LP L
Sbjct:    3 FGSFLIQLFAEGDVAFPPLGAMTERELLEGDAVLTEHEALWRLDQPAPTPSFDLTAGRWGAVRLFRACQFVLYREADAAAIEEELAPPYPGPLTPAVCYSVDLTFRYLPQL 113
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BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Match: A0A5Q4GRB0_9PLAN (bpX4 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A5Q4GRB0_9PLAN)

HSP 1 Score: 77.0 bits (188), Expect = 6.530e-15
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 1 
Query:   19 FLESLFDDGHVLVPEIESLQEDELLNAREVIRNFEKLYRLELPREIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDLFRL 351
            FL++LF +G V VP    +   EL     ++   E  +R   P   P L +  A  AAVLF+RACQFV  R+   Q + +         D+  +HY+VD+ FR+LPDL RL
Sbjct:    5 FLDALFAEGRVRVPSWGEIDSQELCAVETLLAEIEGQHRQAWPGSPPRLAVEPARWAAVLFFRACQFVAFRDLGEQAIQQAFQPECPGEDSAATHYSVDLTFRYLPDLLRL 115
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BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Match: A0A517Q3X5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q3X5_9PLAN)

HSP 1 Score: 65.1 bits (157), Expect = 8.300e-12
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 MSSFPIFLESLFDDGHVLVPEIESLQEDELLNAREVIRNFEKLYRLELPREIPSLD 168
            MS F  FL SLF+DGHVLVPEIE   E+EL   REV+ +FE  YRL LP  +PS++
Sbjct:    1 MSYFSTFLSSLFEDGHVLVPEIEPFSEEELSAGREVLCDFEAQYRLALPGGMPSVN 56
[Close]
BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Match: A0A4Y8S413_9SPHI (bpX4 domain-containing protein n=1 Tax=Mucilaginibacter psychrotolerans TaxID=1524096 RepID=A0A4Y8S413_9SPHI)

HSP 1 Score: 64.3 bits (155), Expect = 4.290e-10
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:   19 FLESLFDDGHVLVP-EIESLQEDELLNAREVIRNFEKLYRLELPREIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDLFRL 351
            FL  LF +G V VP ++ +++E +L  A  +IR F +  RLE+    P LD   A  AA  F+RA QFV+LR+    Q+   L       D   + YAVD+VFR+L  LF+L
Sbjct:    8 FLNRLFTEGVVTVPRQLLAVEEADLREAVRLIRQFYESDRLEMAYVAPVLDEAAALWAAQYFFRAVQFVLLRDLEEDQMAIHLQPYGREVDA-GAVYAVDLVFRYLGPLFKL 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Match: A0A437MYZ3_9SPHI (bpX4 domain-containing protein n=1 Tax=Mucilaginibacter limnophilus TaxID=1932778 RepID=A0A437MYZ3_9SPHI)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-8
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:   19 FLESLFDDGHVLVP-EIESLQEDELLNAREVIRNFEKLYRLELPREIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDLFRL 351
            F++ LF +G V VP ++     D+L     +++ ++   RLEL    P  D +    AA  FYRA QFV+LR      +   L   +  P T E+ Y+VD++FR L  LF+L
Sbjct:    6 FVQGLFTEGVVNVPRQLLEFHADDLRETAILLQQYQLAERLELAFNAPDFDESAGLWAAQYFYRAIQFVLLRELEEAAIQAYLKAYEE-PVTCEAIYSVDLIFRHLAPLFKL 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Match: A0A518AUF8_9BACT (bpX4 domain-containing protein n=1 Tax=Aeoliella mucimassa TaxID=2527972 RepID=A0A518AUF8_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.150e-7
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   97 AREVIRNFEKLYRLELPREIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPESHYAVDMVFRFLPDLFRL 351
            A  V+  FE+ YR+ LP++ P LD+  A  AA  F+ A   +V R+     + + L+   +    PE+HYAVD+  RFLP+L +L
Sbjct:   31 ASVVLVRFEEDYRICLPQDPPELDLDAALWAAESFHHAASLLVNRDYGDDVIVQTLDTPASDRTQPETHYAVDLTMRFLPELLKL 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106437.1391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A2E7KG49_9PLAN2.610e-76100.00bpX4 domain-containing protein n=6 Tax=Gimesia Tax... [more]
A0A518A3F0_9PLAN1.730e-4867.52bpX4 domain-containing protein n=2 Tax=Gimesia pan... [more]
A0A517RCS7_9PLAN2.210e-3652.14bpX4 domain-containing protein n=1 Tax=Gimesia alb... [more]
A0A6I6A7L9_9PLAN1.050e-2590.38bpX4 domain-containing protein n=1 Tax=Gimesia ben... [more]
UPI001E5274615.040e-1741.44hypothetical protein n=1 Tax=unclassified Blastopi... [more]
A0A5Q4GRB0_9PLAN6.530e-1537.84bpX4 domain-containing protein n=1 Tax=Planctomyce... [more]
A0A517Q3X5_9PLAN8.300e-1258.93Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A4Y8S413_9SPHI4.290e-1040.18bpX4 domain-containing protein n=1 Tax=Mucilaginib... [more]
A0A437MYZ3_9SPHI1.440e-834.82bpX4 domain-containing protein n=1 Tax=Mucilaginib... [more]
A0A518AUF8_9BACT2.150e-737.65bpX4 domain-containing protein n=1 Tax=Aeoliella m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106437contigM-pyrifera_M_contig106437:277..627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.7
Seed ortholog evalue1e-09
Seed eggNOG ortholog497964.CfE428DRAFT_5319
Hectar predicted targeting categoryother localisation
EggNOG OGs2BYG0@1,32TGP@2,46VS0@74201
Best tax levelVerrucomicrobia
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.3399801-CDS-M-pyrifera_M_contig106437:276..6271622815574.3399801-CDS-M-pyrifera_M_contig106437:276..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106437 277..627 +
1692277470.2774413-CDS-M-pyrifera_M_contig106437:276..6271692277470.2774413-CDS-M-pyrifera_M_contig106437:276..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106437 277..627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106437.1391.1prot_M-pyrifera_M_contig106437.1391.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106437 277..627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106437.1391.1

>prot_M-pyrifera_M_contig106437.1391.1 ID=prot_M-pyrifera_M_contig106437.1391.1|Name=mRNA_M-pyrifera_M_contig106437.1391.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MSSFPIFLESLFDDGHVLVPEIESLQEDELLNAREVIRNFEKLYRLELPR
EIPSLDITLAERAAVLFYRACQFVVLRNAPPQQLDEELNEIQNFPDTPES
HYAVDMVFRFLPDLFRL
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mRNA from alignment at M-pyrifera_M_contig106437:277..627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106437.1391.1 ID=mRNA_M-pyrifera_M_contig106437.1391.1|Name=mRNA_M-pyrifera_M_contig106437.1391.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig106437:277..627+ (Macrocystis pyrifera P11B4 male)
ATGTCTTCCTTTCCGATATTTCTCGAATCACTGTTTGATGATGGACATGT
TCTGGTTCCAGAAATCGAATCACTTCAGGAAGACGAACTCCTGAATGCAA
GGGAAGTCATCAGAAATTTTGAGAAGCTATATCGACTGGAATTGCCTCGA
GAGATTCCCTCCCTCGATATCACCCTGGCTGAACGAGCCGCAGTTTTGTT
TTATCGTGCCTGTCAATTTGTCGTTCTGCGCAATGCGCCCCCTCAGCAAC
TCGATGAAGAATTAAACGAGATACAAAATTTCCCTGATACGCCTGAGTCA
CATTATGCAGTCGATATGGTATTTCGATTTCTGCCTGATCTGTTTCGCCT
T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106437:277..627+

>mRNA_M-pyrifera_M_contig106437.1391.1 ID=mRNA_M-pyrifera_M_contig106437.1391.1|Name=mRNA_M-pyrifera_M_contig106437.1391.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig106437:277..627+ (Macrocystis pyrifera P11B4 male)
ATGTCTTCCTTTCCGATATTTCTCGAATCACTGTTTGATGATGGACATGT
TCTGGTTCCAGAAATCGAATCACTTCAGGAAGACGAACTCCTGAATGCAA
GGGAAGTCATCAGAAATTTTGAGAAGCTATATCGACTGGAATTGCCTCGA
GAGATTCCCTCCCTCGATATCACCCTGGCTGAACGAGCCGCAGTTTTGTT
TTATCGTGCCTGTCAATTTGTCGTTCTGCGCAATGCGCCCCCTCAGCAAC
TCGATGAAGAATTAAACGAGATACAAAATTTCCCTGATACGCCTGAGTCA
CATTATGCAGTCGATATGGTATTTCGATTTCTGCCTGATCTGTTTCGCCT
TATGTCTTCCTTTCCGATATTTCTCGAATCACTGTTTGATGATGGACATG
TTCTGGTTCCAGAAATCGAATCACTTCAGGAAGACGAACTCCTGAATGCA
AGGGAAGTCATCAGAAATTTTGAGAAGCTATATCGACTGGAATTGCCTCG
AGAGATTCCCTCCCTCGATATCACCCTGGCTGAACGAGCCGCAGTTTTGT
TTTATCGTGCCTGTCAATTTGTCGTTCTGCGCAATGCGCCCCCTCAGCAA
CTCGATGAAGAATTAAACGAGATACAAAATTTCCCTGATACGCCTGAGTC
ACATTATGCAGTCGATATGGTATTTCGATTTCTGCCTGATCTGTTTCGCC
TT
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