mRNA_M-pyrifera_M_contig106436.1390.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Match: A0A3C0HSI8_9ACTN (TIGR03960 family radical SAM protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HSI8_9ACTN) HSP 1 Score: 356 bits (914), Expect = 3.180e-117 Identity = 175/208 (84.13%), Postives = 191/208 (91.83%), Query Frame = 1 Query: 4 VVLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYDVEYDGAFLAGITPRHSDVPTTIEKRTVADLGEWPYPKNQLVPMTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVALTSLSTADFSGIEGVVKGAVSDKGTGQISVALPSLRVDAFTVGIAAEIQRARRTGLTF 627 VVLGDGEE +G+IT+LV EWK GKN+GTREGLLREL+K+ GVYVPSMY+VEYDG FLA +TPR+ DVP +EKRTVADL +WPYPK QLVPMTEVVHDRL+VEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEV+LTSLSTADFSGIE VV VSD+G GQ+SVALPSLRVDAFTVGIAAE+QRARRTGLTF Sbjct: 170 VVLGDGEEVIGDITDLVGEWKRNGKNAGTREGLLRELSKIEGVYVPSMYEVEYDGEFLAAVTPRYPDVPEKVEKRTVADLADWPYPKQQLVPMTEVVHDRLAVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVSLTSLSTADFSGIEKVVADTVSDQGVGQVSVALPSLRVDAFTVGIAAELQRARRTGLTF 377
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Match: A0A7X5WVW1_9ACTN (TIGR03960 family B12-binding radical SAM protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WVW1_9ACTN) HSP 1 Score: 346 bits (887), Expect = 3.060e-113 Identity = 167/209 (79.90%), Postives = 189/209 (90.43%), Query Frame = 1 Query: 1 FVVLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYDVEYDGAFLAGITPRHSDVPTTIEKRTVADLGEWPYPKNQLVPMTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVALTSLSTADFSGIEGVVKGAVSDKGTGQISVALPSLRVDAFTVGIAAEIQRARRTGLTF 627 FVVLGDGEEAVG+ITE +REWKVAGK +G+REG+LR+LA++PGVYVPS+Y+V YDGA +A + PRH DVP +EKRT+ADL EWPYPK QLVP+TEVVHDRL+VEVFRGCTRGCRFCQAGMITRPVRERPAEQV MI+EGL+RTGYDEVALTSLSTADFSGIE V+ V+D G Q+SVALPSLRVDAFTVGIAAE+QRARRTGLTF Sbjct: 163 FVVLGDGEEAVGDITEALREWKVAGKPAGSREGILRDLARIPGVYVPSLYEVVYDGAVIAEVRPRHPDVPAVVEKRTIADLAEWPYPKQQLVPLTEVVHDRLNVEVFRGCTRGCRFCQAGMITRPVRERPAEQVRTMITEGLRRTGYDEVALTSLSTADFSGIEKVIADTVTDAGCDQVSVALPSLRVDAFTVGIAAELQRARRTGLTF 371
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Match: A0A7K1Z6F5_9ACTN (TIGR03960 family B12-binding radical SAM protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z6F5_9ACTN) HSP 1 Score: 340 bits (872), Expect = 7.280e-111 Identity = 167/209 (79.90%), Postives = 185/209 (88.52%), Query Frame = 1 Query: 1 FVVLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYDVEYDGAFLAGITPRHSDVPTTIEKRTVADLGEWPYPKNQLVPMTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVALTSLSTADFSGIEGVVKGAVSDKGTGQISVALPSLRVDAFTVGIAAEIQRARRTGLTF 627 FVVLGDGEE VGEITE+VREWK G++ G+R +LRELAK+ GVYVPSMY V Y+GAF+A +TPR +DVP T+EKRTVADL +WPYPK QLVP+TEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQV MIS+GL RTGYDEVALTSLSTADFSGI+ V+ +SD G Q+SVALPSLRVDAFTVGIAAEIQRARRTGLTF Sbjct: 162 FVVLGDGEEVVGEITEIVREWKDTGRSDGSRRSVLRELAKVAGVYVPSMYQVAYEGAFIAEVTPRFADVPATVEKRTVADLADWPYPKQQLVPLTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVRTMISDGLARTGYDEVALTSLSTADFSGIQQVIGETISDAGCDQVSVALPSLRVDAFTVGIAAEIQRARRTGLTF 370
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Match: A0A6B1EHC2_9ACTN (TIGR03960 family B12-binding radical SAM protein n=13 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EHC2_9ACTN) HSP 1 Score: 326 bits (836), Expect = 1.290e-105 Identity = 161/209 (77.03%), Postives = 182/209 (87.08%), Query Frame = 1 Query: 1 FVVLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYDVEYDGAFLAGITPRHSDVPTTIEKRTVADLGEWPYPKNQLVPMTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVALTSLSTADFSGIEGVVKGAVSDKGTGQISVALPSLRVDAFTVGIAAEIQRARRTGLTF 627 FVVLGDGEEAVG+ITE++R+WK +G+ SG R G+LR LA++PGVYVPSMY+ Y+ LA + PRH DVP +EKRTVADL +WPYPK QLVP+TEVVHDRL+VEVFRGCTRGCRFCQAGMITRPVRERPAEQV M+SEGL+RTGYDEVALTSLSTADFSGIE VV V G GQ+SV+LPSLRVDAFTVGIAA+IQRARRTGLTF Sbjct: 163 FVVLGDGEEAVGDITEVLRDWKTSGR-SGGRSGVLRALARVPGVYVPSMYEPVYERGRLAAVEPRHPDVPAVVEKRTVADLADWPYPKRQLVPLTEVVHDRLNVEVFRGCTRGCRFCQAGMITRPVRERPAEQVRTMVSEGLRRTGYDEVALTSLSTADFSGIEQVVASTVDASGCGQVSVSLPSLRVDAFTVGIAAQIQRARRTGLTF 370
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Match: A0A7W1YTA3_9ACTN (TIGR03960 family B12-binding radical SAM protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1YTA3_9ACTN) HSP 1 Score: 324 bits (831), Expect = 6.680e-105 Identity = 161/210 (76.67%), Postives = 178/210 (84.76%), Query Frame = 1 Query: 1 FVVLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYDVEYDGAFLAGITPRHSDVPTTIEKRTVADLGEWPYPKNQLVPMTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVALTSLSTADFSGIEGVVKGAVSDKGT-GQISVALPSLRVDAFTVGIAAEIQRARRTGLTF 627 F VLGDGEE V EITE V EWK G+ +G+RE LL +LA + GVYVPSMYDV YDGA +A +TP+H DVP +EKRT+ADLGEWPYPK QLVP+TEVVHDRL+VEVFRGCTRGCRFCQAGMITRPVRERPA QV RM+ GL RTGYDEVALTSLSTADFSGIE VV V+D GQ+SV+LPSLRVDAFTVGIAAE+QRARRTGLTF Sbjct: 163 FFVLGDGEEVVSEITERVAEWKAGGRTAGSRERLLHDLAGVAGVYVPSMYDVTYDGARVAAVTPKHPDVPERVEKRTIADLGEWPYPKRQLVPLTEVVHDRLNVEVFRGCTRGCRFCQAGMITRPVRERPAAQVRRMVGNGLARTGYDEVALTSLSTADFSGIERVVADTVNDPANCGQVSVSLPSLRVDAFTVGIAAELQRARRTGLTF 372
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Match: A0A6N7FW36_9ACTN (TIGR03960 family B12-binding radical SAM protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FW36_9ACTN) HSP 1 Score: 320 bits (819), Expect = 1.410e-104 Identity = 157/210 (74.76%), Postives = 178/210 (84.76%), Query Frame = 1 Query: 7 VLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYDVEYDGAFLAGITPRHSDVPTTIEKRTVADLGEWPYPKNQLVPMTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVALTSLSTADFSGIEGVVKGAVSDKG---TGQISVALPSLRVDAFTVGIAAEIQRARRTGLTF 627 VLGDGEE V EIT++VR WK +G+ G+R +LRELA++PGVYVPS+Y+V YDG L I PR+ DVP +EKRTVADL EWPYPK QLVP+TEVVHDRL+VEVFRGCTRGCRFCQAGMITRPVRERPA+QV M+ EG++RTGYDEVALTSLSTADFSGIEGVV V D G TG +SV+LPSLRVDAFTVGIA EIQ+ARRTGLTF Sbjct: 165 VLGDGEEVVAEITDVVRAWKASGRTEGSRTAVLRELARVPGVYVPSLYEVVYDGPALVSIEPRYPDVPAQVEKRTVADLAEWPYPKRQLVPLTEVVHDRLNVEVFRGCTRGCRFCQAGMITRPVRERPADQVRTMVREGIRRTGYDEVALTSLSTADFSGIEGVVADIVGDPGGCGTGPVSVSLPSLRVDAFTVGIATEIQKARRTGLTF 374
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Match: A0A432JPR7_9ACTN (TIGR03960 family B12-binding radical SAM protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A432JPR7_9ACTN) HSP 1 Score: 323 bits (829), Expect = 1.810e-104 Identity = 160/207 (77.29%), Postives = 179/207 (86.47%), Query Frame = 1 Query: 7 VLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYDVEYDGAFLAGITPRHSDVPTTIEKRTVADLGEWPYPKNQLVPMTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVALTSLSTADFSGIEGVVKGAVSDKGTGQISVALPSLRVDAFTVGIAAEIQRARRTGLTF 627 VLGDGEE V EITE+VR+WK +G+ G R +LREL++L GVYVPSMYD EYDG L +TPR VP +EKRT+ADL +WPYPKNQLVP+TEVVHDRL+VEVFRGCTRGCRFCQAGMITRPVRERPAEQV M+++GL+RTGYDEVALTSLSTADFSGIE VV AVSD GQ+SV+LPSLRVDAFTVGIAAEIQRARRTGLTF Sbjct: 165 VLGDGEEVVSEITEVVRDWKASGR--GPRHEVLRELSRLDGVYVPSMYDAEYDGDTLVAVTPRMDGVPAVVEKRTIADLADWPYPKNQLVPLTEVVHDRLNVEVFRGCTRGCRFCQAGMITRPVRERPAEQVRTMVADGLRRTGYDEVALTSLSTADFSGIEEVVAAAVSDDACGQVSVSLPSLRVDAFTVGIAAEIQRARRTGLTF 369
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Match: UPI001AA0806C (TIGR03960 family B12-binding radical SAM protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0806C) HSP 1 Score: 321 bits (823), Expect = 1.230e-103 Identity = 156/209 (74.64%), Postives = 183/209 (87.56%), Query Frame = 1 Query: 4 VVLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYDVEYDGAFLAGITPRHSDVPTTIEKRTVADLGEWPYPKNQLVPMTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVALTSLSTADFSGIEGVVKGAVSDKGTGQ-ISVALPSLRVDAFTVGIAAEIQRARRTGLTF 627 VVLGDGEE VGE+TE+V WK +G+ G+RE +LRELAK+PGVYVPSMY+V YDG L ITPR+ DVP +EKRTVADL +WPYPK QLVP+TEVVHDRL+VEVFRGCTRGCRFCQAGMITRPVRERPAEQV M+++GL+R+GYDEVALTSLSTAD+SGIE +V+G + D GQ +SV+LPSLRVDAFTVGIA+EIQR++RTGLTF Sbjct: 164 VVLGDGEEVVGELTEVVGAWKASGRTEGSREHVLRELAKVPGVYVPSMYEVTYDGRDLVAITPRYPDVPERVEKRTVADLADWPYPKRQLVPLTEVVHDRLNVEVFRGCTRGCRFCQAGMITRPVRERPAEQVRTMVADGLRRSGYDEVALTSLSTADYSGIEDLVRGVIDDAPGGQPVSVSLPSLRVDAFTVGIASEIQRSKRTGLTF 372
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Match: A0A5Q2RJN4_9ACTN (TIGR03960 family B12-binding radical SAM protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RJN4_9ACTN) HSP 1 Score: 321 bits (822), Expect = 1.650e-103 Identity = 155/209 (74.16%), Postives = 179/209 (85.65%), Query Frame = 1 Query: 4 VVLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYDVEYDGAFLAGITPRHSDVPTTIEKRTVADLGEWPYPKNQLVPMTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVALTSLSTADFSGIEGVVKGAVSDKGT-GQISVALPSLRVDAFTVGIAAEIQRARRTGLTF 627 VVLGDGEE +GEITE+VREWK +G+ G+RE +LR LA + GVYVPS+Y+ E+DG L G+ PR DVP +EKRT+ADL +WPYPKNQLVP+TEVVHDRL+VEVFRGCTRGCRFCQAGMITRPVRERPAEQV +M+ +GL RTGYDEVALTSLSTADFSGIE VV V D GQ+SV+LPSLRVDAFTVG+AA+IQ+ARRTGLTF Sbjct: 164 VVLGDGEEVIGEITEVVREWKASGRTEGSRENVLRALAGISGVYVPSLYEAEFDGGSLVGVFPRFPDVPEIVEKRTIADLADWPYPKNQLVPLTEVVHDRLNVEVFRGCTRGCRFCQAGMITRPVRERPAEQVRKMVQDGLARTGYDEVALTSLSTADFSGIERVVADTVDDPSNRGQVSVSLPSLRVDAFTVGVAAQIQKARRTGLTF 372
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Match: A0A7Y2DE96_9ACTN (TIGR03960 family B12-binding radical SAM protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DE96_9ACTN) HSP 1 Score: 320 bits (821), Expect = 2.390e-103 Identity = 154/209 (73.68%), Postives = 180/209 (86.12%), Query Frame = 1 Query: 4 VVLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYDVEYDGAFLAGITPRHSDVPTTIEKRTVADLGEWPYPKNQLVPMTEVVHDRLSVEVFRGCTRGCRFCQAGMITRPVRERPAEQVSRMISEGLQRTGYDEVALTSLSTADFSGIEGVVKGAVSDKGT-GQISVALPSLRVDAFTVGIAAEIQRARRTGLTF 627 V LGDGEE VG+ITE+VR+WK +G+ G+RE LLRELA++PGVY PS+YDV YDG FLA +TPR+ DVP +EKRTVADL EWPYPKNQLVP+TEVVHDRL+VEVFRGCTRGCRFCQAGMITRPVRERPA+QV MI GL+RTGYDEV+LTSLSTAD+S ++ VV+ + D GQ+SVALPSLRVDAFTV +AA+I+ ARRTGLTF Sbjct: 164 VALGDGEELVGDITEVVRDWKASGRTDGSRENLLRELAQIPGVYCPSLYDVSYDGEFLAEVTPRYPDVPAVVEKRTVADLAEWPYPKNQLVPLTEVVHDRLNVEVFRGCTRGCRFCQAGMITRPVRERPADQVRTMIQNGLERTGYDEVSLTSLSTADYSDVQRVVEETIDDPANCGQVSVALPSLRVDAFTVNVAAKIKSARRTGLTF 372 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106436.1390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig106436.1390.1 >prot_M-pyrifera_M_contig106436.1390.1 ID=prot_M-pyrifera_M_contig106436.1390.1|Name=mRNA_M-pyrifera_M_contig106436.1390.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp FVVLGDGEEAVGEITELVREWKVAGKNSGTREGLLRELAKLPGVYVPSMYback to top mRNA from alignment at M-pyrifera_M_contig106436:1..627- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig106436.1390.1 ID=mRNA_M-pyrifera_M_contig106436.1390.1|Name=mRNA_M-pyrifera_M_contig106436.1390.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=627bp|location=Sequence derived from alignment at M-pyrifera_M_contig106436:1..627- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig106436:1..627- >mRNA_M-pyrifera_M_contig106436.1390.1 ID=mRNA_M-pyrifera_M_contig106436.1390.1|Name=mRNA_M-pyrifera_M_contig106436.1390.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1254bp|location=Sequence derived from alignment at M-pyrifera_M_contig106436:1..627- (Macrocystis pyrifera P11B4 male)back to top |