mRNA_M-pyrifera_M_contig106423.1385.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106423.1385.1
Unique NamemRNA_M-pyrifera_M_contig106423.1385.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Match: A0A7S2UY83_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY83_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.080e-32
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 1
Query:    1 VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSPKDGLTTISAGIIAGGIASAAVTPFDVVKTRFQAPGGSKRYGSVINCFRTVARDEGQATLWKGAGARAVVVGTLYGVSMLFFELLKTSMV 417
            VR+LGV G Y G   T+MRDVP+S+IFFPLYA ++  +  + G     S       ++AG  AG +ASA VTP DVVKTR Q  GG ++YG++ NC+R V + EG   L+ GA  R  VVG L+G+++L FE +K  ++
Sbjct:  161 VRKLGVRGCYAGGVATLMRDVPFSIIFFPLYANIKNMLATKDGDNSIAS------LLAAGCAAGAVASACVTPTDVVKTRLQVDGGKEKYGNIANCYRMVIKQEGVGALFAGALPRMTVVGPLFGIALLSFEKMKEYLI 293          
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Match: A0A0L0GBC0_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GBC0_9EUKA)

HSP 1 Score: 121 bits (304), Expect = 7.070e-31
Identity = 66/135 (48.89%), Postives = 91/135 (67.41%), Query Frame = 1
Query:    1 VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSPKDGLTTISAGIIAGGIASAAVTPFDVVKTRFQAPGGSKRYGSVINCFRTVARDEGQATLWKGAGARAVVVGTLYGVSMLFFELLK 405
            V+ LGV GLY+G+  T MRDVPYS++FFPLYATLR+    + G+  AG P+     I AG IAG +A+ A TP D +KTRFQ+ G S  Y S+ +CF+   ++EG   L+KG+  R +V G L+GV++L FE+ K
Sbjct:  167 VKNLGVKGLYKGILVTWMRDVPYSIVFFPLYATLRDKFADERGV--AGIPQ----IIMAGNIAGAVAAFACTPADTIKTRFQSEGSS--YKSIGDCFKQTVKNEGVKALFKGSVPRMLVTGPLFGVALLAFEMQK 293          
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Match: W7TVG3_9STRA (Putative mitochondrial aspartate-glutamate transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVG3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.640e-28
Identity = 57/140 (40.71%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    1 VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSPKDGLTTISAGIIAGGIASAAVTPFDVVKTRFQAPGGSKRYGSVINCFRTVARDEGQATLWKGAGARAVVVGTLYGVSMLFFELLKTSMVK 420
            VR LG+ G+Y+G + T+ RD+P+S+IFFPLYA L+++       + + +     + + AG +AG + S A TP DV+KTR Q  GG ++Y  +  CFR V ++EG + L+KG+  R  VV  L+G+++L FE+ K  M+K
Sbjct:  165 VRGLGLRGMYQGTTATLSRDIPFSLIFFPLYANLKKAFADPKTKENSIA-----SLLGAGGLAGAMGSWAATPADVIKTRLQLAGGKEKYKDMQTCFRMVLKEEGVSALFKGSVPRMCVVAPLFGIALLSFEMQKNYMIK 299          
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Match: A0A662WMF6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMF6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.820e-27
Identity = 62/138 (44.93%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSPKDGLTTISAGIIAGGIASAAVTPFDVVKTRFQAPGGSKRYGSVINCFRTVARDEGQATLWKGAGARAVVVGTLYGVSMLFFELLKTSM 414
            V+ LG+ GLY+G S   MRDVPY+VIFFP YATLR++        R+      L+ ++AG  AG  A+A  TP DV+KTR Q  G    Y  V++CFR V +  G   L KGAG R +V   L+G++++ FEL K  M
Sbjct:  176 VQSLGLRGLYKGASVCFMRDVPYAVIFFPSYATLRDAWA-----DRSTGKNSILSIVTAGATAGAAAAAICTPADVIKTRLQMKGSP--YTGVVDCFRKVVKANGPGALLKGAGPRMMVQAPLFGITLVAFELQKKYM 306          
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Match: L8GR57_ACACA (Mitochondrial glutamate carrier 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GR57_ACACA)

HSP 1 Score: 111 bits (277), Expect = 1.020e-26
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    1 VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSPKDGLTTISAGIIAGGIASAAVTPFDVVKTRFQAPGGSKRYGSVINCFRTVARDEGQATLWKGAGARAVVVGTLYGVSMLFFELLK 405
            VR LG  GLY+GL  T++RDVP+S +FFP+Y+ +R++   Q G   A      L T++AG  AG +A+AAVTP DVVKTR+Q       Y S+  C R V R+ G  T +KGA  R  +   LYGV++L FEL K
Sbjct:  183 VRELGFRGLYKGLPATLLRDVPFSFLFFPIYSNIRQAWLHQRG--DAKGEVGLLPTLAAGAAAGAVAAAAVTPADVVKTRYQVEHSP--YTSLHQCARAVWREGGPRTFFKGAVERMAIQAPLYGVALLAFELQK 313          
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Match: A0A3B5MQ21_9TELE (Solute carrier family 25 member 12 n=1 Tax=Xiphophorus couchianus TaxID=32473 RepID=A0A3B5MQ21_9TELE)

HSP 1 Score: 108 bits (269), Expect = 4.610e-26
Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSPKDGLTTISAGIIAGGIASAAVTPFDVVKTRFQ--APGGSKRYGSVINCFRTVARDEGQATLWKGAGARAVVVGTLYGVSMLFFELLK 405
            VR LG  GLY+G     +RD+P+S I+FP+YA  +E +  + G  R G     L  ++AG IAG  A++ VTP DV+KTR Q  A  G   Y  VI+CFR + R+EG +  WKGAGAR       +GV+++ +ELL+
Sbjct:   60 VRDLGFLGLYKGAKACFLRDIPFSAIYFPVYAHTKEKLADEDG--RVGP----LQLLTAGAIAGVPAASLVTPADVIKTRLQVAARAGQTTYDGVIDCFRKILREEGFSAFWKGAGARVFRSSPQFGVTLVTYELLQ 190          
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Match: A0A0L0TES7_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TES7_ALLM3)

HSP 1 Score: 109 bits (272), Expect = 5.140e-26
Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSPKDGLTTISAGIIAGGIASAAVTPFDVVKTRFQAPGGSKRYGSVINCFRTVARDEGQATLWKGAGARAVVVGTLYGVSMLFFE 396
            V  LG+ GLYRG + T+MRDVP+S++FFPL+A L+  +    G    GS         +G+ AG IA+ AVTP DV+KTR QA   +    S+  CF T+ R+EG   L+KG   R ++V  L+G+++L +E
Sbjct:  185 VSELGIRGLYRGTAATLMRDVPFSIMFFPLHAWLKSQLAAPDGTVAFGS------VFGSGLAAGWIAAGAVTPMDVIKTRLQAKAANAPAMSIRECFTTIVRNEGAGALFKGWLPRCMIVSPLFGITLLVYE 310          
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Match: A0A8D3CES9_SCOMX (Uncharacterized protein n=5 Tax=Percomorphaceae TaxID=1489872 RepID=A0A8D3CES9_SCOMX)

HSP 1 Score: 111 bits (278), Expect = 9.940e-26
Identity = 64/137 (46.72%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSPKDGLTTISAGIIAGGIASAAVTPFDVVKTRFQ--APGGSKRYGSVINCFRTVARDEGQATLWKGAGARAVVVGTLYGVSMLFFELLK 405
            VR LG  GLY+G     +RD+P+S I+FP YA L+     + G  R G+    L  ++AG IAG  A++ VTP DVVKTR Q  A  G   Y  VINCFRT+ R+EG   LWKGAGAR       +GV+++ +ELL+
Sbjct:  495 VRDLGFFGLYKGAKACFLRDIPFSAIYFPAYAHLKTQFADEQG--RLGA----LQLLTAGAIAGIPAASLVTPADVVKTRLQVAARAGQTTYTGVINCFRTIMREEGFKALWKGAGARMCRSSPQFGVTLVTYELLQ 625          
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Match: W4HDE4_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HDE4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.320e-25
Identity = 60/142 (42.25%), Postives = 86/142 (60.56%), Query Frame = 1
Query:    1 VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSPKDG----LTTISAGIIAGGIASAAVTPFDVVKTRFQAPGGSKRYGSVINCFRTVARDEGQATLWKGAGARAVVVGTLYGVSMLFFELLKTSM 414
            V+ LG+ GLY+G +  ++RD+PY+VIFFP+YAT+R+           G+ KDG     + + AG  AG  A+  VTP DV+KT+ Q  G   RY   I+CF+ V    G A L+KGAG R +V   L+G+++L FE+ K  M
Sbjct:  165 VQELGLRGLYKGTTACLLRDIPYAVIFFPMYATIRD----------LGTDKDGHVSMASVVFAGCTAGATAAGFVTPADVIKTKRQMRGA--RYKGTIDCFQQVVASGGVAALFKGAGPRMMVQAPLFGITLLAFEVQKAYM 294          
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Match: A0A662XTZ1_9STRA (PIPK domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTZ1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.440e-25
Identity = 62/138 (44.93%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSPKDGLTTISAGIIAGGIASAAVTPFDVVKTRFQAPGGSKRYGSVINCFRTVARDEGQATLWKGAGARAVVVGTLYGVSMLFFELLKTSM 414
            V+ LG+ GLY+G S   MRDVPY+VIFFP YATLR++        R+      L+ ++AG  AG +A+A  TP DV+KTR Q  G    Y  V +CFR V +  G   L KGAG R +V   L+G++++ FEL K  M
Sbjct:  947 VQSLGLRGLYKGASVCFMRDVPYAVIFFPSYATLRDAWA-----DRSTGKNSILSIVTAGATAGAVAAAICTPADVIKTRLQMKGSP--YTGVADCFRQVVKANGPGALLKGAGPRMMVQAPLFGITLVAFELQKKYM 1077          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106423.1385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UY83_9STRA1.080e-3246.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0L0GBC0_9EUKA7.070e-3148.89Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
W7TVG3_9STRA6.640e-2840.71Putative mitochondrial aspartate-glutamate transpo... [more]
A0A662WMF6_9STRA7.820e-2744.93Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
L8GR57_ACACA1.020e-2646.67Mitochondrial glutamate carrier 1, putative n=1 Ta... [more]
A0A3B5MQ21_9TELE4.610e-2643.80Solute carrier family 25 member 12 n=1 Tax=Xiphoph... [more]
A0A0L0TES7_ALLM35.140e-2642.42Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
A0A8D3CES9_SCOMX9.940e-2646.72Uncharacterized protein n=5 Tax=Percomorphaceae Ta... [more]
W4HDE4_9STRA1.320e-2542.25Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A662XTZ1_9STRA1.440e-2544.93PIPK domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106423contigM-pyrifera_M_contig106423:187..627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score124.4
Seed ortholog evalue4.4e-26
Seed eggNOG ortholog72019.SARC_01636T0
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Mitochondrial carrier protein
EggNOG OGs39PGU@33154,KOG0751@1,KOG0751@2759
COG Functional cat.C
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.1176455-CDS-M-pyrifera_M_contig106423:186..6271622815574.1176455-CDS-M-pyrifera_M_contig106423:186..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106423 187..627 -
1692277470.1968982-CDS-M-pyrifera_M_contig106423:186..6271692277470.1968982-CDS-M-pyrifera_M_contig106423:186..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106423 187..627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106423.1385.1prot_M-pyrifera_M_contig106423.1385.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106423 187..627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106423.1385.1

>prot_M-pyrifera_M_contig106423.1385.1 ID=prot_M-pyrifera_M_contig106423.1385.1|Name=mRNA_M-pyrifera_M_contig106423.1385.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
VRRLGVTGLYRGLSTTIMRDVPYSVIFFPLYATLRESMQRQMGMQRAGSP
KDGLTTISAGIIAGGIASAAVTPFDVVKTRFQAPGGSKRYGSVINCFRTV
ARDEGQATLWKGAGARAVVVGTLYGVSMLFFELLKTSMVKKQAASH*
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mRNA from alignment at M-pyrifera_M_contig106423:187..627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106423.1385.1 ID=mRNA_M-pyrifera_M_contig106423.1385.1|Name=mRNA_M-pyrifera_M_contig106423.1385.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig106423:187..627- (Macrocystis pyrifera P11B4 male)
GTCCGTCGTCTTGGAGTGACTGGTTTGTATCGTGGTCTGAGTACCACTAT CATGCGAGATGTGCCCTACTCGGTCATCTTCTTCCCTTTGTATGCCACCT TGCGTGAAAGCATGCAACGTCAAATGGGAATGCAACGTGCAGGAAGCCCA AAGGATGGTCTTACCACCATTTCTGCTGGGATCATTGCTGGTGGAATTGC TTCTGCAGCTGTCACTCCATTTGACGTCGTCAAGACGCGATTCCAGGCAC CTGGTGGAAGCAAACGCTACGGAAGTGTCATCAACTGCTTCCGTACTGTG GCACGTGATGAAGGTCAAGCCACACTTTGGAAAGGTGCTGGTGCACGTGC AGTCGTCGTAGGAACGCTGTATGGTGTTTCCATGCTTTTCTTCGAACTCC TCAAAACTTCCATGGTCAAGAAGCAAGCAGCTTCTCACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106423:187..627-

>mRNA_M-pyrifera_M_contig106423.1385.1 ID=mRNA_M-pyrifera_M_contig106423.1385.1|Name=mRNA_M-pyrifera_M_contig106423.1385.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig106423:187..627- (Macrocystis pyrifera P11B4 male)
GTCCGTCGTCTTGGAGTGACTGGTTTGTATCGTGGTCTGAGTACCACTAT
CATGCGAGATGTGCCCTACTCGGTCATCTTCTTCCCTTTGTATGCCACCT
TGCGTGAAAGCATGCAACGTCAAATGGGAATGCAACGTGCAGGAAGCCCA
AAGGATGGTCTTACCACCATTTCTGCTGGGATCATTGCTGGTGGAATTGC
TTCTGCAGCTGTCACTCCATTTGACGTCGTCAAGACGCGATTCCAGGCAC
CTGGTGGAAGCAAACGCTACGGAAGTGTCATCAACTGCTTCCGTACTGTG
GCACGTGATGAAGGTCAAGCCACACTTTGGAAAGGTGCTGGTGCACGTGC
AGTCGTCGTAGGAACGCTGTATGGTGTTTCCATGCTTTTCTTCGAACTCC
TCAAAACTTCCATGGTCAAGAAGCAAGCAGCTTCTCACTAAGTCCGTCGT
CTTGGAGTGACTGGTTTGTATCGTGGTCTGAGTACCACTATCATGCGAGA
TGTGCCCTACTCGGTCATCTTCTTCCCTTTGTATGCCACCTTGCGTGAAA
GCATGCAACGTCAAATGGGAATGCAACGTGCAGGAAGCCCAAAGGATGGT
CTTACCACCATTTCTGCTGGGATCATTGCTGGTGGAATTGCTTCTGCAGC
TGTCACTCCATTTGACGTCGTCAAGACGCGATTCCAGGCACCTGGTGGAA
GCAAACGCTACGGAAGTGTCATCAACTGCTTCCGTACTGTGGCACGTGAT
GAAGGTCAAGCCACACTTTGGAAAGGTGCTGGTGCACGTGCAGTCGTCGT
AGGAACGCTGTATGGTGTTTCCATGCTTTTCTTCGAACTCCTCAAAACTT
CCATGGTCAAGAAGCAAGCAGCTTCTCACTAA
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