mRNA_M-pyrifera_M_contig106418.1384.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106418.1384.1
Unique NamemRNA_M-pyrifera_M_contig106418.1384.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Match: A0A5A8CRY8_CAFRO (BTB domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRY8_CAFRO)

HSP 1 Score: 196 bits (498), Expect = 2.840e-59
Identity = 92/138 (66.67%), Postives = 112/138 (81.16%), Query Frame = 1
Query:   49 QATFHLHKFPLISKSHYFDENIPEAASSTGPVEMKIKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPDLERTTTSFLSEVVLQDPRKAAKVLKVATGLEHMSEAMMEGLLGHCINAIAARFAPIPEL 462
            + TFHLHKFPL+SKSH+FDENIP++A   G +EM IKDFPGGP+AFE V K+ YGIDIE+TV+EIA +YC  R+L  PDLE+TT +F++E+VL DPRKAAKVLKVAT +E+M E MME L+G CINAIAA F    EL
Sbjct:   26 EETFHLHKFPLVSKSHFFDENIPDSAERPGAIEMHIKDFPGGPAAFEIVAKWCYGIDIELTVDEIAPVYCGARYLHAPDLEKTTDAFMTEIVLPDPRKAAKVLKVATDIENMREDMMENLVGRCINAIAASFGDYEEL 163          
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Match: A0A482RKL0_9ARCH (BTB/POZ domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RKL0_9ARCH)

HSP 1 Score: 152 bits (385), Expect = 1.480e-44
Identity = 75/109 (68.81%), Postives = 91/109 (83.49%), Query Frame = 1
Query:   49 QATFHLHKFPLISKSHYFDENIPEAASSTGP--VEMKIKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPDLERTTTSFLSEVVLQDPRKAAKVLKVAT 369
            + TFHLHKFPLISKS YFDENIPE+  +  P   EM IKDFPGGPSAFE V K+TYGIDIE++V+ IA+IYCA R LR+PDLE++T +F++EVVL+DP KAA VLKV+T
Sbjct:   24 ERTFHLHKFPLISKSLYFDENIPESTVAAAPHTTEMIIKDFPGGPSAFELVAKYTYGIDIELSVDNIAHIYCAARVLRVPDLEKSTEAFMTEVVLRDPAKAAIVLKVST 132          
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Match: A0A812S9H6_9DINO (RPT2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812S9H6_9DINO)

HSP 1 Score: 130 bits (327), Expect = 1.040e-33
Identity = 62/118 (52.54%), Postives = 87/118 (73.73%), Query Frame = 1
Query:  112 IPEAASSTG-PVEMKIKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPDLERTTTSFLSEVVLQDPRKAAKVLKVATGLEHMSEAMMEGLLGHCINAIAARFAPIPEL 462
            +P  A   G P  +KI  FPGGP+AFE + K+ YGIDI++TV+ IA  YCA R LR+P+LE++T  F+++VVL+D  ++  VL+ AT ++HMS+ M+EGL+GH INAIA+ F  IPEL
Sbjct:    2 VPHEARPNGEPARIKIDGFPGGPAAFEQIAKWCYGIDIDLTVDNIAFAYCAARTLRVPELEKSTEVFMTQVVLKDIVRSTAVLRAATSIQHMSDEMLEGLIGHSINAIASMFEHIPEL 119          
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Match: A0A2Z6LGQ8_TRISU (Uncharacterized protein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2Z6LGQ8_TRISU)

HSP 1 Score: 84.7 bits (208), Expect = 4.600e-17
Identity = 52/138 (37.68%), Postives = 79/138 (57.25%), Query Frame = 1
Query:   43 LSQATFHLHKFPLISKSHYFDENIPEAASSTGPVEM-KIKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPD------LERTTTSFLSEVVLQDPRKAAKVLKVATGLEHMSEAMMEGLLGHCINAIA 435
            + +A++ LHKFPLISKS Y  + I E++     V + ++ D PGGP AFE   KF YGI+ E++VE IA + C   +L + +      L   T S+L+EV L+    A  +L ++  L  ++E     L+  CI+AIA
Sbjct:   21 IGEASYSLHKFPLISKSGYIRKLISESSDPATDVPLIELIDVPGGPEAFELAAKFCYGINFEISVENIAMLRCIADYLEMTEDYSVGNLVGRTDSYLNEVALKSMSGAISILHISETLLPIAEKTK--LVSKCIDAIA 156          
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Match: A0A151TWN3_CAJCA (BTB/POZ domain-containing protein At5g48800 family (Fragment) n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TWN3_CAJCA)

HSP 1 Score: 86.3 bits (212), Expect = 9.220e-17
Identity = 50/135 (37.04%), Postives = 74/135 (54.81%), Query Frame = 1
Query:   49 QATFHLHKFPLISKSHYFDENIPEAASSTGPVEMKIKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPD------LERTTTSFLSEVVLQDPRKAAKVLKVATGLEHMSEAMMEGLLGHCINAIA 435
            + +F LHKFPL+SKS Y  + + E     G   +++ D PGG  AFE V KF YG++ E++VE IA + C   +L + +      L     S+L+EV L+    A  +L V+  L  ++E     LL  CI+AIA
Sbjct:   12 EVSFSLHKFPLVSKSGYIGKLVSECKDDDGSSFIELYDVPGGAEAFELVTKFCYGVNFEISVENIAMLLCVAEYLEMTEDYCVGNLVGRADSYLNEVALKTISGAVSILHVSERLLPIAEKTK--LLSRCIDAIA 144          
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Match: M4D2R8_BRARP (Uncharacterized protein n=4 Tax=Brassica TaxID=3705 RepID=M4D2R8_BRARP)

HSP 1 Score: 86.3 bits (212), Expect = 9.510e-17
Identity = 48/141 (34.04%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   49 QATFHLHKFPLISKSHYFDENIPEAASSTGPVEMK----IKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPD------LERTTTSFLSEVVLQDPRKAAKVLKVATGLEHMSEAMMEGLLGHCINAIAAR 441
            + +FHLHKFPL+S+S   + NI EA+      + K    I D PGG   FE + KF YG+ +E+T   + ++ CA   L + +      L   T SFL++VVL+  + + K L+  + + H +E +   +   CI ++AAR
Sbjct:   36 EMSFHLHKFPLLSRSGVMERNIAEASQQGDDDDDKCLIQISDLPGGDKTFELIAKFCYGVKLELTASNVVHLRCAAEHLEMTEDHAEGNLISQTESFLNQVVLKSWKDSIKALQTCSEVSHYAEEL--NITKKCIESLAAR 174          
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Match: A0A6J0LU71_RAPSA (root phototropism protein 2-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0LU71_RAPSA)

HSP 1 Score: 83.2 bits (204), Expect = 1.210e-16
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 1
Query:   49 QATFHLHKFPLISKSHYFDENIPEAASSTGPVEMKIKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPD------LERTTTSFLSEVVLQDPRKAAKVLKVATGLEHMSEAMMEGLLGHCINAIAAR 441
            +A F LHKF L++KS+Y  + I E+  S     + + D PGGP  FE   KF YG++ E+TV+ +A ++CA  FL++ D      L   T  FLS+V L     A  VLK    L  +S  +  G++  C++ +  +
Sbjct:   40 EANFSLHKFMLVAKSNYIRKLIMESKDSDV-TRIDLSDIPGGPEMFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAVVVLKSCEILLPISRDL--GIVRRCVDVVGTK 173          
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Match: UPI001929D255 (BTB/POZ domain-containing protein At5g66560-like isoform X2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929D255)

HSP 1 Score: 85.5 bits (210), Expect = 1.450e-16
Identity = 52/153 (33.99%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   49 QATFHLHKFPLISKS---HYFDENIPEAASSTGPVE------MKIKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPD------LERTTTSFLSEVVLQDPRKAAKVLKVATGLEHMSEAMMEGLLGHCINAIAARFAPIPEL 462
            + ++HLHKFPL+SKS   H       +     G +E      +K+ DFPGG   FE   KF+YG+ IE+T    A + CA  +L + +      L   T  F+++ VL++ R + K LK    L  ++E +  G+  HC++AIAA+ +  P+L
Sbjct:   29 RMSYHLHKFPLMSKSRKLHLLITEHEKEEDDDGEIEEEELHHIKLSDFPGGAETFEAAAKFSYGVKIELTAWTAAPLRCAAEYLEMTEDFSEDNLISRTDRFIAQSVLRNIRDSIKTLKSCENLMPLAEDL--GIPQHCVDAIAAKASASPDL 179          
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Match: A0A6I9UPU6_SESIN (BTB/POZ domain-containing protein At1g30440 n=2 Tax=Lamiales TaxID=4143 RepID=A0A6I9UPU6_SESIN)

HSP 1 Score: 85.5 bits (210), Expect = 1.750e-16
Identity = 47/145 (32.41%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   46 SQATFHLHKFPLISKSHYFDENIPEAASSTGPVEMKIKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPD------LERTTTSFLSEVVLQDPRKAAKVLKVATGLEHMSEAMMEGLLGHCINAIAARFAPIPEL 462
            ++ +FHLHKFPL+S+S   +  I EA+       +K+ D PGG   FE V KF YG+ +E+T   +A + CA   L + +      L   T +FL++VVL+  + + K L+    +   +E +   +   CI+++AA+    P L
Sbjct:   35 AEMSFHLHKFPLLSRSGVMERLISEASEGENGCVIKLPDIPGGAKTFELVAKFCYGVKLELTAANVAYLRCAAEHLEMTEEYGEGNLISQTENFLNQVVLRSWKDSLKALQTCDDVLSFAEEL--NITKRCIDSLAAKACTDPNL 177          
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Match: A0A7J7M1L4_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7M1L4_9MAGN)

HSP 1 Score: 85.1 bits (209), Expect = 2.400e-16
Identity = 48/136 (35.29%), Postives = 80/136 (58.82%), Query Frame = 1
Query:   58 FHLHKFPLISKSHYFDENIPEAASSTGPVEMKIKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPD------LERTTTSFLSEVVLQDPRKAAKVLKVATGLEHMSEAMMEGLLGHCINAIAARFA 447
            F++HK+PLISKS Y      ++++   P  +K+++FPGGP  FETV+KF YGI +++T   +A + CA  FL++ +      L   T +FL+ +VL   R +  VLK    L   +E +   ++  C ++IA++ A
Sbjct:   69 FYVHKYPLISKSEYMSRIDLQSSNPDFPYNLKLENFPGGPETFETVLKFCYGILVDLTPTNVAPLRCASEFLQMTEEYEDGNLITRTEAFLTFIVLSSWRDSITVLKSCKSLSPWAENLH--IVRRCSDSIASKAA 202          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106418.1384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CRY8_CAFRO2.840e-5966.67BTB domain-containing protein n=1 Tax=Cafeteria ro... [more]
A0A482RKL0_9ARCH1.480e-4468.81BTB/POZ domain-containing protein n=1 Tax=archaeon... [more]
A0A812S9H6_9DINO1.040e-3352.54RPT2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A2Z6LGQ8_TRISU4.600e-1737.68Uncharacterized protein n=2 Tax=Trifolium TaxID=38... [more]
A0A151TWN3_CAJCA9.220e-1737.04BTB/POZ domain-containing protein At5g48800 family... [more]
M4D2R8_BRARP9.510e-1734.04Uncharacterized protein n=4 Tax=Brassica TaxID=370... [more]
A0A6J0LU71_RAPSA1.210e-1635.04root phototropism protein 2-like n=1 Tax=Raphanus ... [more]
UPI001929D2551.450e-1633.99BTB/POZ domain-containing protein At5g66560-like i... [more]
A0A6I9UPU6_SESIN1.750e-1632.41BTB/POZ domain-containing protein At1g30440 n=2 Ta... [more]
A0A7J7M1L4_9MAGN2.400e-1635.29Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106418contigM-pyrifera_M_contig106418:36..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.3
Seed ortholog evalue4.3e-16
Seed eggNOG ortholog264402.Cagra.25155s0004.1.p
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Belongs to the NPH3 family
EggNOG OGs28MXB@1,2QUFV@2759,37NZQ@33090,3GF0U@35493,3HSIY@3699
COG Functional cat.S
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size462
Cds size462
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.0850816-CDS-M-pyrifera_M_contig106418:35..4971622815574.0850816-CDS-M-pyrifera_M_contig106418:35..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106418 36..497 -
1692277470.1848948-CDS-M-pyrifera_M_contig106418:35..4971692277470.1848948-CDS-M-pyrifera_M_contig106418:35..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106418 36..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106418.1384.1prot_M-pyrifera_M_contig106418.1384.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106418 36..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106418.1384.1

>prot_M-pyrifera_M_contig106418.1384.1 ID=prot_M-pyrifera_M_contig106418.1384.1|Name=mRNA_M-pyrifera_M_contig106418.1384.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
MHTLSFFLFLFLFSLSQATFHLHKFPLISKSHYFDENIPEAASSTGPVEM
KIKDFPGGPSAFETVVKFTYGIDIEVTVEEIANIYCACRFLRIPDLERTT
TSFLSEVVLQDPRKAAKVLKVATGLEHMSEAMMEGLLGHCINAIAARFAP
IPEL
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mRNA from alignment at M-pyrifera_M_contig106418:36..497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106418.1384.1 ID=mRNA_M-pyrifera_M_contig106418.1384.1|Name=mRNA_M-pyrifera_M_contig106418.1384.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig106418:36..497- (Macrocystis pyrifera P11B4 male)
ATGCACACTCTTTCCTTTTTCCTATTTCTTTTCTTGTTTTCTTTGTCGCA GGCCACGTTCCACTTGCACAAGTTCCCTTTGATCAGCAAGAGCCACTACT TTGACGAGAACATTCCGGAGGCTGCTTCTTCGACTGGCCCAGTGGAGATG AAGATCAAGGACTTCCCTGGGGGTCCTTCGGCGTTCGAGACGGTGGTGAA GTTCACGTACGGGATCGACATCGAGGTGACCGTGGAGGAGATCGCCAACA TCTACTGCGCGTGTCGTTTCCTCCGCATTCCCGACCTGGAGCGAACGACG ACGTCATTTTTGAGCGAGGTGGTGTTGCAGGACCCTCGCAAGGCCGCCAA GGTGCTCAAGGTGGCCACAGGCTTGGAGCACATGTCGGAGGCGATGATGG AGGGATTGCTGGGTCATTGCATCAACGCCATTGCTGCTCGGTTCGCTCCC ATTCCCGAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106418:36..497-

>mRNA_M-pyrifera_M_contig106418.1384.1 ID=mRNA_M-pyrifera_M_contig106418.1384.1|Name=mRNA_M-pyrifera_M_contig106418.1384.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig106418:36..497- (Macrocystis pyrifera P11B4 male)
ATGCACACTCTTTCCTTTTTCCTATTTCTTTTCTTGTTTTCTTTGTCGCA
GGCCACGTTCCACTTGCACAAGTTCCCTTTGATCAGCAAGAGCCACTACT
TTGACGAGAACATTCCGGAGGCTGCTTCTTCGACTGGCCCAGTGGAGATG
AAGATCAAGGACTTCCCTGGGGGTCCTTCGGCGTTCGAGACGGTGGTGAA
GTTCACGTACGGGATCGACATCGAGGTGACCGTGGAGGAGATCGCCAACA
TCTACTGCGCGTGTCGTTTCCTCCGCATTCCCGACCTGGAGCGAACGACG
ACGTCATTTTTGAGCGAGGTGGTGTTGCAGGACCCTCGCAAGGCCGCCAA
GGTGCTCAAGGTGGCCACAGGCTTGGAGCACATGTCGGAGGCGATGATGG
AGGGATTGCTGGGTCATTGCATCAACGCCATTGCTGCTCGGTTCGCTCCC
ATTCCCGAGCTGATGCACACTCTTTCCTTTTTCCTATTTCTTTTCTTGTT
TTCTTTGTCGCAGGCCACGTTCCACTTGCACAAGTTCCCTTTGATCAGCA
AGAGCCACTACTTTGACGAGAACATTCCGGAGGCTGCTTCTTCGACTGGC
CCAGTGGAGATGAAGATCAAGGACTTCCCTGGGGGTCCTTCGGCGTTCGA
GACGGTGGTGAAGTTCACGTACGGGATCGACATCGAGGTGACCGTGGAGG
AGATCGCCAACATCTACTGCGCGTGTCGTTTCCTCCGCATTCCCGACCTG
GAGCGAACGACGACGTCATTTTTGAGCGAGGTGGTGTTGCAGGACCCTCG
CAAGGCCGCCAAGGTGCTCAAGGTGGCCACAGGCTTGGAGCACATGTCGG
AGGCGATGATGGAGGGATTGCTGGGTCATTGCATCAACGCCATTGCTGCT
CGGTTCGCTCCCATTCCCGAGCTG
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