mRNA_M-pyrifera_M_contig106390.1375.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106390.1375.1
Unique NamemRNA_M-pyrifera_M_contig106390.1375.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106390.1375.1 vs. uniprot
Match: A0A2E8D1K0_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D1K0_9PLAN)

HSP 1 Score: 81.6 bits (200), Expect = 6.230e-15
Identity = 53/189 (28.04%), Postives = 84/189 (44.44%), Query Frame = 1 
Query:   10 MYENVVEPYEKWVRSDVMNSAGNPWFYILPNGELHEWDGSDNVSGALITKVGIHAYENPELLGAASE----------------------------TVAADPVGALAADNTRHFYRSSTGNYAYNAMGGNEKWLKGEIAQKSAGGQNNPWYFILPNGDVKEWDGSANLTGAMVGNYGVGVYENPSLLYNA 492
            MYE+     EKW++      +G  W+YI P GEL  W G D  +  ++  +    +  PELL  A+E                              AA+   +  A   + +     G+Y  N  G NEKW++          Q + W+F+LPNG++ +WD  A  TG +V +    VY++P+LL++A
Sbjct:  632 MYEDWGGLGEKWIKG-----SGGDWYYITPAGELFLWHGGDVHNATIVATLSPEYHAKPELLYDAAEYATTQTETTQQQESQVETQEAGTDANEGEAAANSQTSELAQLDQQYGFHFAGSYYTNWGGKNEKWIQD---------QQSRWFFLLPNGELYQWDSGAGATGTLVASLSTDVYDDPALLHDA 806
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BLAST of mRNA_M-pyrifera_M_contig106390.1375.1 vs. uniprot
Match: A0A356AGP8_9PLAN (Calx-beta domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356AGP8_9PLAN)

HSP 1 Score: 55.1 bits (131), Expect = 9.190e-6
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    1 SEGMY-ENVVEPYEKWVRSDVMNSAGNPWFYILPNGELHEWDGSDNVSGALITKVGIHAYENPELL 195
            SEG Y EN     E+W+RS       N WFY+L NG+LH+W+GS   S  LI  +G   YE+P LL
Sbjct:  453 SEGNYFENHQGGGERWLRSQT-----NQWFYLLENGDLHQWNGSLETS-PLIAALGTAVYEDPTLL 512
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BLAST of mRNA_M-pyrifera_M_contig106390.1375.1 vs. uniprot
Match: A0A5C5XEI9_9PLAN (Calx-beta domain protein n=1 Tax=Rubinisphaera italica TaxID=2527969 RepID=A0A5C5XEI9_9PLAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.030e-5
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    1 SEGMY-ENVVEPYEKWVRSDVMNSAGNPWFYILPNGELHEWDGSDNVSGALITKVGIHAYENPELL 195
            SEG Y EN     E+W+RS       N WFY+L NG+LH+W+GS   S  LI  +G   YE+P LL
Sbjct: 1331 SEGNYFENHQGGGERWLRSQA-----NQWFYLLENGDLHQWNGSLETS-PLIAALGAAVYEDPTLL 1390
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106390.1375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E8D1K0_9PLAN6.230e-1528.04Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A356AGP8_9PLAN9.190e-646.97Calx-beta domain-containing protein (Fragment) n=1... [more]
A0A5C5XEI9_9PLAN1.030e-546.97Calx-beta domain protein n=1 Tax=Rubinisphaera ita... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106390contigM-pyrifera_M_contig106390:67..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size492
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.6772559-CDS-M-pyrifera_M_contig106390:66..5581622815573.6772559-CDS-M-pyrifera_M_contig106390:66..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106390 67..558 -
1692277470.0017915-CDS-M-pyrifera_M_contig106390:66..5581692277470.0017915-CDS-M-pyrifera_M_contig106390:66..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106390 67..558 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.6891847-UTR-M-pyrifera_M_contig106390:558..5671622815573.6891847-UTR-M-pyrifera_M_contig106390:558..567Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106390 559..567 -
1692277470.011481-UTR-M-pyrifera_M_contig106390:558..5671692277470.011481-UTR-M-pyrifera_M_contig106390:558..567Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106390 559..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106390.1375.1prot_M-pyrifera_M_contig106390.1375.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106390 67..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106390.1375.1

>prot_M-pyrifera_M_contig106390.1375.1 ID=prot_M-pyrifera_M_contig106390.1375.1|Name=mRNA_M-pyrifera_M_contig106390.1375.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
MYENVVEPYEKWVRSDVMNSAGNPWFYILPNGELHEWDGSDNVSGALITK
VGIHAYENPELLGAASETVAADPVGALAADNTRHFYRSSTGNYAYNAMGG
NEKWLKGEIAQKSAGGQNNPWYFILPNGDVKEWDGSANLTGAMVGNYGVG
VYENPSLLYNANLV
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mRNA from alignment at M-pyrifera_M_contig106390:67..567-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106390.1375.1 ID=mRNA_M-pyrifera_M_contig106390.1375.1|Name=mRNA_M-pyrifera_M_contig106390.1375.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig106390:67..567- (Macrocystis pyrifera P11B4 male)
TCCGAAGGTATGTACGAGAACGTTGTTGAGCCTTACGAAAAATGGGTTCG
CAGCGATGTCATGAACTCAGCGGGCAACCCCTGGTTTTATATCCTTCCCA
ACGGCGAACTGCACGAATGGGACGGTTCGGACAACGTGAGCGGCGCTTTG
ATCACCAAAGTGGGAATTCACGCATATGAAAACCCCGAACTGCTCGGCGC
CGCTTCGGAAACGGTAGCCGCCGACCCGGTTGGCGCCTTGGCTGCTGACA
ACACGCGACACTTCTACCGCTCATCGACCGGCAATTACGCTTACAACGCC
ATGGGCGGCAACGAAAAATGGCTTAAAGGTGAAATCGCTCAAAAAAGCGC
CGGCGGCCAGAACAACCCCTGGTACTTCATTCTGCCCAACGGCGATGTCA
AAGAATGGGATGGCTCCGCCAATCTCACCGGCGCCATGGTAGGTAACTAT
GGTGTTGGCGTCTACGAGAATCCGTCGCTGCTTTACAACGCCAACCTGGT
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106390:67..567-

>mRNA_M-pyrifera_M_contig106390.1375.1 ID=mRNA_M-pyrifera_M_contig106390.1375.1|Name=mRNA_M-pyrifera_M_contig106390.1375.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig106390:67..567- (Macrocystis pyrifera P11B4 male)
ATGTACGAGAACGTTGTTGAGCCTTACGAAAAATGGGTTCGCAGCGATGT
CATGAACTCAGCGGGCAACCCCTGGTTTTATATCCTTCCCAACGGCGAAC
TGCACGAATGGGACGGTTCGGACAACGTGAGCGGCGCTTTGATCACCAAA
GTGGGAATTCACGCATATGAAAACCCCGAACTGCTCGGCGCCGCTTCGGA
AACGGTAGCCGCCGACCCGGTTGGCGCCTTGGCTGCTGACAACACGCGAC
ACTTCTACCGCTCATCGACCGGCAATTACGCTTACAACGCCATGGGCGGC
AACGAAAAATGGCTTAAAGGTGAAATCGCTCAAAAAAGCGCCGGCGGCCA
GAACAACCCCTGGTACTTCATTCTGCCCAACGGCGATGTCAAAGAATGGG
ATGGCTCCGCCAATCTCACCGGCGCCATGGTAGGTAACTATGGTGTTGGC
GTCTACGAGAATCCGTCGCTGCTTTACAACGCCAACCTGGTGATGTACGA
GAACGTTGTTGAGCCTTACGAAAAATGGGTTCGCAGCGATGTCATGAACT
CAGCGGGCAACCCCTGGTTTTATATCCTTCCCAACGGCGAACTGCACGAA
TGGGACGGTTCGGACAACGTGAGCGGCGCTTTGATCACCAAAGTGGGAAT
TCACGCATATGAAAACCCCGAACTGCTCGGCGCCGCTTCGGAAACGGTAG
CCGCCGACCCGGTTGGCGCCTTGGCTGCTGACAACACGCGACACTTCTAC
CGCTCATCGACCGGCAATTACGCTTACAACGCCATGGGCGGCAACGAAAA
ATGGCTTAAAGGTGAAATCGCTCAAAAAAGCGCCGGCGGCCAGAACAACC
CCTGGTACTTCATTCTGCCCAACGGCGATGTCAAAGAATGGGATGGCTCC
GCCAATCTCACCGGCGCCATGGTAGGTAACTATGGTGTTGGCGTCTACGA
GAATCCGTCGCTGCTTTACAACGCCAACCTGGTG
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