mRNA_M-pyrifera_M_contig10636.1373.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10636.1373.1
Unique NamemRNA_M-pyrifera_M_contig10636.1373.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Match: A0A6H5L889_9PHAE (HOOK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L889_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 4.300e-78
Identity = 183/212 (86.32%), Postives = 194/212 (91.51%), Query Frame = 1 
Query:    1 QSQLEHAHRIKDERSAEALAAKRNAADLEQKNHKLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAQSLEDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQDKAAAKREERLLMSSVYELGMDIIERQLKSSVSDQIRGAESAPGSSWMQRQRTQVKKSNPVAL 636
            +SQLE A R+KDERSAEALAAKRNAADLEQKN+KLE        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       DRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIA+KN+KIDYLESK+SQDKAA+KREERLLMSSVYELGMDIIERQLKSSVSDQIRGA+SAPGSSWMQR+R +VKK+NPVAL
Sbjct:  310 ESQLEDALRVKDERSAEALAAKRNAADLEQKNNKLEQLVSEMKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAQKNEKIDYLESKISQDKAASKREERLLMSSVYELGMDIIERQLKSSVSDQIRGADSAPGSSWMQRKRAEVKKANPVAL 521
[Close]
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Match: D7G7L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L9_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 3.120e-77
Identity = 184/212 (86.79%), Postives = 194/212 (91.51%), Query Frame = 1 
Query:    1 QSQLEHAHRIKDERSAEALAAKRNAADLEQKNHKLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAQSLEDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQDKAAAKREERLLMSSVYELGMDIIERQLKSSVSDQIRGAESAPGSSWMQRQRTQVKKSNPVAL 636
            +SQLE A R+KDERSAEALAAKRNAADLEQKN+KLE        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       DRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKN+KIDYLESK+SQDKAA+KREERLLMSSVYELGMDIIERQLKSSVSDQIRGA+SAPGSSWMQR+R +VKK+NPVAL
Sbjct:  442 ESQLEDALRVKDERSAEALAAKRNAADLEQKNNKLEQLVSEMKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNEKIDYLESKISQDKAASKREERLLMSSVYELGMDIIERQLKSSVSDQIRGADSAPGSSWMQRKRAEVKKANPVAL 653
[Close]
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Match: A0A7S4D7M7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7M7_HETAK)

HSP 1 Score: 120 bits (300), Expect = 6.780e-31
Identity = 74/146 (50.68%), Postives = 98/146 (67.12%), Query Frame = 1 
Query:  247 AQSLEDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQDKAAAKREERLLMSSVYELGMDIIERQLKSSVSDQIRGAESAP----------------GSSWMQRQRTQV-KKSNPVA 633
            A  L  RLKE+ET+ N L  DK KLE+YTKKTLHK Q+KY+VA+  CK Q+ E+ D+I+ LE++ ++DKAA KREERLLMS+VYELGMDII  +L SSV + +R    A                 G SW++++R +V +K NPVA
Sbjct:   11 AAGLAARLKEKETEANRLAGDKAKLEAYTKKTLHKVQEKYLVALQTCKNQLRERQDRIEALEARQAKDKAAQKREERLLMSAVYELGMDIINTRLVSSVGEGLRPGTGAMAVGASGGXXXXXXGPGGGSWLRQKREEVSRKINPVA 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Match: A0A7S2UWL2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWL2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.810e-25
Identity = 57/125 (45.60%), Postives = 88/125 (70.40%), Query Frame = 1 
Query:  241 LTAQSLEDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQDKAAAKREERLLMSSVYELGMDIIERQLKSSVSDQIRGAESAPGSSWMQRQRTQVK 615
            +T   L  +LKERE+++N L +DKEKLE+YTKKTLHK Q+KY+ A+  CK Q++E  +KI +LE+  ++DK   K EERLLMS++Y +GMD++E +L  +V+ +  G   +  ++W+ R R + K
Sbjct:  132 MTVAQLTQQLKERESKINRLTSDKEKLEAYTKKTLHKVQEKYLTALQTCKNQLSENQEKIKHLENSRAKDKQTQKLEERLLMSAMYNMGMDMVEHKLVHTVTSRGGGGSISGANTWLSRGREEAK 256
[Close]
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Match: A0A7S1DY74_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DY74_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.600e-22
Identity = 51/95 (53.68%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:  250 QSLEDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQDKAAAKREERLLMSSVYELGMDIIERQLK 534
            + L+D L ++E +   + TDKEKLE+YTK+TL KFQ+KY+VA+  CK ++ EK DKI+ LES+ S +K A KREERL  S VYELG+ I++++LK
Sbjct:   28 KQLQDELAKKEAEKTKIGTDKEKLEAYTKRTLAKFQEKYLVALQECKTKLKEKQDKIEALESRSSSEKTAQKREERLTSSLVYELGLSIMQQRLK 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Match: A0A7R9VIL8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VIL8_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.610e-20
Identity = 48/84 (57.14%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:  283 TQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQDKAAAKREERLLMSSVYELGMDIIERQLK 534
            T+   L +DKEKLE+YTKKTL KFQ+KY+VA+  CKA++ EK+DKI+ LE + + +K A KREERLL S++YELG+ I++++LK
Sbjct:   77 TEKAKLASDKEKLEAYTKKTLSKFQEKYLVALQECKAKLKEKHDKIEALEQRSASEKTAQKREERLLSSTIYELGLAIMQQKLK 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Match: A0A6G0XXZ1_9STRA (Calponin-homology (CH) domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXZ1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.240e-20
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 TAQSLEDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQDKAAAKREERLLMSSVYELGMDIIERQLKSSVSDQIRGAESAPGSSWMQRQRT 606
            T   L +RLKE+ET +NNL  DKEKLE+YTKKTLH  Q KYMVA+S  + Q+AEK  K+D LE+K+ + K + KRE+ LLMSS YE+G ++  R +          A SAP ++W+  +R+
Sbjct:  587 TISELTNRLKEKETVINNLSQDKEKLETYTKKTLHAVQSKYMVAVSTHRNQLAEKQAKVDMLETKLKELKTSQKREQELLMSSFYEIGGEMQRRTMMPQAPT---SASSAPLAAWLPSKRS 704
[Close]
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Match: A0A7S0C7J1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7J1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.590e-20
Identity = 49/92 (53.26%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:  256 LEDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQDKAAAKREERLLMSSVYELGMDIIERQL 531
            L++ LK ++ Q+  + +DKEKLE+YTKKTL KFQ+KY+VA+  CKA++ EK+DKI+ LE + + +K A KREERLL S++YELG+ I++ +L
Sbjct:  377 LKEELKRKDAQIAKVSSDKEKLEAYTKKTLSKFQEKYLVALQECKAKLKEKHDKIEQLEMRSASEKTAQKREERLLSSTIYELGLAIMQNRL 468
[Close]
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Match: A0A7S1G1I6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1I6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.320e-19
Identity = 50/97 (51.55%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:  250 QSLEDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQDKAAAKREERLLMSSVYELGMDIIERQLKSS 540
            + L+ +LK+R+TQ+  L +DK KLESYTKKTLHKFQ+KY+VA+  CK ++  K+D I   E++ + +K A KREERLL S++YELG+++I ++L +S
Sbjct:  493 EDLKSQLKKRDTQIAALASDKAKLESYTKKTLHKFQEKYLVALQECKGKLKAKHDYIQQREAQSNMEKMATKREERLLSSAIYELGLELINKRLGNS 589
[Close]
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Match: B8BRZ1_THAPS (Microtubule-associated protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRZ1_THAPS)

HSP 1 Score: 95.1 bits (235), Expect = 4.410e-19
Identity = 49/93 (52.69%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:  253 SLEDRLKERETQVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQDKAAAKREERLLMSSVYELGMDIIERQL 531
            +LE +L ++  +V  L  DKEKLE+YTKKTL KFQ+KY+VA+  CKA++ EK+DKI+ LE + + +K A KREERLL S++YELG+ +++ +L
Sbjct:  482 ALEKQLNDKNAEVTKLMNDKEKLEAYTKKTLQKFQEKYLVALQDCKAKLKEKHDKIEALEMRSANEKVAQKREERLLSSAIYELGLGMMQTRL 574
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10636.1373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L889_9PHAE4.300e-7886.32HOOK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G7L9_ECTSI3.120e-7786.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D7M7_HETAK6.780e-3150.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWL2_9STRA2.810e-2545.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1DY74_9STRA3.600e-2253.68Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7R9VIL8_9STRA1.610e-2057.14Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6G0XXZ1_9STRA2.240e-2048.76Calponin-homology (CH) domain-containing protein n... [more]
A0A7S0C7J1_9STRA9.590e-2053.26Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1G1I6_9STRA1.320e-1951.55Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8BRZ1_THAPS4.410e-1952.69Microtubule-associated protein n=1 Tax=Thalassiosi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10636contigM-pyrifera_M_contig10636:782..9986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue7.4e-67
Seed eggNOG ortholog2880.D7G7L9
Preferred nameHOOK3
KEGG koko:K16536,ko:K16611,ko:K16612
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000242,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005801,GO:0005813,GO:0005815,GO:0005856,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007017,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007097,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007568,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008283,GO:0008333,GO:0008340,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0010259,GO:0010721,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0016050,GO:0016192,GO:0016482,GO:0017016,GO:0017137,GO:0019827,GO:0019899,GO:0021846,GO:0022008,GO:0022027,GO:0030154,GO:0030182,GO:0030705,GO:0030900,GO:0031122,GO:0031267,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034452,GO:0034453,GO:0034454,GO:0034613,GO:0042051,GO:0042461,GO:0042462,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045022,GO:0045202,GO:0045466,GO:0045467,GO:0045503,GO:0045505,GO:0045595,GO:0045596,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051020,GO:0051093,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051640,GO:0051641,GO:0051645,GO:0051647,GO:0051649,GO:0051656,GO:0051959,GO:0051960,GO:0051961,GO:0060284,GO:0060322,GO:0061351,GO:0065007,GO:0070695,GO:0070727,GO:0071539,GO:0071840,GO:0072393,GO:0072698,GO:0080171,GO:0090596,GO:0097150,GO:0097435,GO:0097708,GO:0098657,GO:0098727,GO:0098927,GO:1905508,GO:2000026
EggNOG free text desc.cytoskeleton-dependent intracellular transport
EggNOG OGs2CMK1@1,2QQM8@2759
Ec32 ortholog descriptionHook-related protein family
Ec32 orthologEc-22_001880.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons6
Model size639
Cds size639
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10636.1373.1prot_M-pyrifera_M_contig10636.1373.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10636 782..9986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.4680626-CDS-M-pyrifera_M_contig10636:781..8801622815573.4680626-CDS-M-pyrifera_M_contig10636:781..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 782..880 -
1692277469.8989286-CDS-M-pyrifera_M_contig10636:781..8801692277469.8989286-CDS-M-pyrifera_M_contig10636:781..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 782..880 -
1622815573.479823-CDS-M-pyrifera_M_contig10636:2224..23321622815573.479823-CDS-M-pyrifera_M_contig10636:2224..2332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 2225..2332 -
1692277469.9114819-CDS-M-pyrifera_M_contig10636:2224..23321692277469.9114819-CDS-M-pyrifera_M_contig10636:2224..2332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 2225..2332 -
1622815573.4892197-CDS-M-pyrifera_M_contig10636:3686..38301622815573.4892197-CDS-M-pyrifera_M_contig10636:3686..3830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 3687..3830 -
1692277469.9247513-CDS-M-pyrifera_M_contig10636:3686..38301692277469.9247513-CDS-M-pyrifera_M_contig10636:3686..3830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 3687..3830 -
1622815573.5000749-CDS-M-pyrifera_M_contig10636:5457..55921622815573.5000749-CDS-M-pyrifera_M_contig10636:5457..5592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 5458..5592 -
1692277469.9358294-CDS-M-pyrifera_M_contig10636:5457..55921692277469.9358294-CDS-M-pyrifera_M_contig10636:5457..5592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 5458..5592 -
1622815573.510719-CDS-M-pyrifera_M_contig10636:7932..79921622815573.510719-CDS-M-pyrifera_M_contig10636:7932..7992Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 7933..7992 -
1692277469.946571-CDS-M-pyrifera_M_contig10636:7932..79921692277469.946571-CDS-M-pyrifera_M_contig10636:7932..7992Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 7933..7992 -
1622815573.522062-CDS-M-pyrifera_M_contig10636:9893..99861622815573.522062-CDS-M-pyrifera_M_contig10636:9893..9986Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 9894..9986 -
1692277469.9548988-CDS-M-pyrifera_M_contig10636:9893..99861692277469.9548988-CDS-M-pyrifera_M_contig10636:9893..9986Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10636 9894..9986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10636.1373.1

>prot_M-pyrifera_M_contig10636.1373.1 ID=prot_M-pyrifera_M_contig10636.1373.1|Name=mRNA_M-pyrifera_M_contig10636.1373.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=213bp
QSQLEHAHRIKDERSAEALAAKRNAADLEQKNHKLEELVAEMKGAPESAA
QAEKSSAKMRGMKEEMDKLRASAADRERLSLTAQSLEDRLKERETQVNNL
QTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNDKIDYLESKVSQD
KAAAKREERLLMSSVYELGMDIIERQLKSSVSDQIRGAESAPGSSWMQRQ
RTQVKKSNPVAL*
back to top

mRNA from alignment at M-pyrifera_M_contig10636:782..9986-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10636.1373.1 ID=mRNA_M-pyrifera_M_contig10636.1373.1|Name=mRNA_M-pyrifera_M_contig10636.1373.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=9205bp|location=Sequence derived from alignment at M-pyrifera_M_contig10636:782..9986- (Macrocystis pyrifera P11B4 male)
CAGTCACAGCTGGAGCACGCTCATCGCATCAAGGACGAACGCTCGGCGGA
GGCGCTGGCGGCGAAGAGAAACGCCGCGGACCTTGAGCAAAAGGTACCGT
ATATGTGTTGAGAGAGTAGAAGCGTAGGAGTGGCAGCAAGGTACAAGTAC
TCTACTGCTCCCCGTGGACCATGGAGCAAACGAATTGCCACAATGTTCTA
CCAACAATCTACTGCTCCCCACGGACCGTGAGCAAAAGGTGACAGAACAG
CGCTGCAGCAGTCGAGCATGCACTAGTGACGGAGCTGCTGACTGAGTACG
AGAGGTTCGGGAAGAGGGAAGAGTGAAGAGTGAAGAGGGTGTGAGTTGTA
ATCTCACAGCACAGGCGCGTCGAAGCTGCCCGTACTGACGGTTTCGTATC
GAAGCAAACCGCCATACCATACAGTACAAAACCCGATATCGTATGGAGTC
ATTCTTTCACTACAAGTATCCTGACTAAAGAAGCACCAAACTATCCTGCT
GCTGTACATTCGTAGGGCTGTGACGTGACTTGACGAGAGTAAGATGATGA
GTTGCCACCTTCAGTAGTTGTTAGTTGGCCAGGGATTACAGTACTCGTGT
GCGGTAATTTTTGCAGCTGCTGCGTATCTGACTTACTGGCTCCTTCGTGG
CCCGCCCTTGGTTTTTTGTTGTTGCCAAGAGACTGAGAGGGTTAGTTGGT
TAGTTTGCTTTGCTTCGCCACCTGCAGTCGCTGGTCCAGCTAACCCAGGT
AGCCCTACGTACAACTCTGAGCGAAACTATGACCCCCATTTGGACTCTGA
GGTCATCATGAAACGGTGGCTATATTTACCGTCAGAGTGGTAGACGTTGT
AGCCGTTAACGGCATGAAACGTTGTCTCAATATTTAGATGAACGAAAAAA
AACAAGTTGTTCTGACGCACACCACAGCAAAAAATGGGGTACCGTTTTGA
GCTGGGTGAATGAAACCGTTTTGAGCTACGGCGGTGATTCTACGACCGAC
CACCGATATCTACTGTACGACATATCGCGATTTTGATAGTACCAGATGCT
CGTCCGCCGCCGACTGAGATGTACGATTCTTCTGATTATTTTCACGTGGG
ACAGGTGACGCCACAGCAGCGCTATGCCATCTACTGCTCTAGCTACTGCT
GTAGCTACTGTAACCCTATGATGCGTTGTGCGGGGTCGTGTGTTGAAGAC
CCAAACCACGAAATGTGCCCTGCCGTACCTGGTGCTTTTTTTTTTTTTCA
AGTTTGTACGGCTCCCGTGGGGCGACATGAGCTAGATCATTCCGTAGATG
TGTATGGATGGATAGATAGATATATAGGTGTATGAATGGATAGATAGATA
GATAGATAGATAGATAGATAACACTCTGTTCCCAAGTAAAAGTACCCATT
TGCTTTAATATTAAGATGCAATCGTTCCTGTATAGTTTGGGACATCATAC
AGATCATAACAGATCATACAGATCCGGAATACATCTCCCCTGAAGTATCT
ATCACACGGTAGATGGATAGATGATACATATCAGAAATATATATTCCCTG
AAATGTCTAAGATACAGTATGTGGATAGATCATAAAGATCAGCAACACAT
CTCCCTAAAATGTCGAAGATACGGTGGATGGATAGATCATAAAGATTAAG
AAATATATCGTCCCTGAAATGTCTAGATCGTGGAAGCGTAGGAAGCGACG
CCCTACACTACTATCCGAGGTGTGAGCTTCTCCGACCGACGCACCCAAGT
TGACGAGAGCTCTACACTAATTATCCTGCTTCTTCGCTGGTTCCTGTTGT
ATCGATGTAACGGCAGCTAGATACAAGTACGACTAATGACGACGTCGTAC
CCCCCCCCTCTCGGCATTATAGAGATGCGAGGGTCTATCGTCATACGACT
GCGACCATACATGAGATCGAGTACATCTCTCCTATCGAGCACACCCCCCC
ACACACCACCGCGCTCACCCCGTCTTTTTGTCGTGGCCCAACAGAATCAC
AAGTTGGAGGAGCTCGTGGCGGAGATGAAGGGAGCACCGGAGAGTGCGGC
CCAGGTGCGTGTGTCGCCCGTGCGCGTCGCAGTTCTGGCCTACGGTATCG
GTATCTGTTTCGGTAACGGTATTCGTGTGGTGAGGATACGGAACGGTAAT
GGTTCGGTAATGGTACGGTAGTGGTTTCGGTAATGGTTTCGGTATTGTGT
TCGGCAACGGTAATGGTGAGATAACAGTAACGGTATAGTAGCGGTAACCA
AGCGGTAACGAAGCGGTGGTAATGGTGGTTACGTGGTATGATAGTGGTTT
CGATGATGGTTCCGGTAGGAGTGCGGTAATTGTATCGATAGTCAAAAGGT
AACGGTATGGTGGCGGGGGAAGGGAATCGTTACGAGGAGGGTCCGATACG
GTATTCATATCGGGAATGGCACGTGTACGGTAACGGGGGCGGTGATGGTT
TCGGTAGAGGTACGGTTATCGTGCGGTAAATGTATCGGTAACGGCAAGGT
AAAGGTTAGGGTAGAGGAACGGTACTGTACGGTATTTATATCGGTAATGA
TACGGTAACAGTATAGTAGCGGTAAAAGGGTAAGGGGTAAGGGTACGCCG
TAGACGTTTTCCACCCGCCCCTTTTGTCGCGTAGTTTTTCTCGGAAATTC
GCCCATCGGAAAGTAAAGGGCGTGTGTGTGCCTCACGCAAAGGCGCACGG
ACTTGCTTTACAGTTGTTTGTGTTATTACTATTACAATGACCCGTTTAGT
ACTGCAGTCCTCTAACTAATTACGAGTGTTTCGTCCCCAATACGGGGTTG
CGGTTCTAAAACAATGGTTGGTAACTCTGGTGTCGCCAACCATCTACGAT
AGGCAGCGTCGGTGTGTGTGTAGCTCGAAACAACCGATTGCATCCCCCGA
TGATGCGGTGCCCCAACACCTCACGTGCCGCTTCGCGCTTGGTGCAAGCA
CAATGTCTGGTCGGTGAAAATCCGGCGTGCTCCGTCCCGGCATCGTGTAG
GGATGCGAGAGTCTATGGTCATACGACTACGGCCACGCATGACTATGAAT
ACCCCCCCCCCTAGTCAATCAATCACGCAGTTTGCCTGTTGCTGTACCCA
TTATTTTATTAATAGTTGTTTTCGCCAAAGTACAGCTTGACCACAGCAAA
ATTGACGATCACGGCCTCGGCCGCTGCGTGGTATGATGGTATACCCAATG
CTGTCCGACCTACATACGTATAGACAATGCAACAAGGAGTCGTACGGCAC
GACACGAGGAGCAACATCCAGCTGATTGGCTCTCTAACGAAAAATCCTTT
AACTACTGTAGTCTAAACCCAGTAGACCCTTCGTCGTTTACATTGGTTTT
GTGTGGTATAATACGGTTCTTCATGGTTGAAAACATCAAGATTTTGTCAC
ATGCGTTGTCCGCCATCGAGAGGTCCCGCAGGAATTGATGGGTGAGCAAA
AGAAAAGAAAAAGAAAGGGACCCAATACGATCGTCATTCCGGCGGCTTAC
TGCGGGAGAGCATATAGTAATCAGAACCCCCAGATATAGCCCAAAAACAA
TGGGACCCTCCCTCTACATTTGCGCACTTTTTCTTTTTTTTTTTTCCCCT
TTTTTTGTGTTATTTCGAGGGGGACCATAGTTAATAGTACCTGCGGTACA
CACGAAAAATATATATTTACCTATTTTTACTAACAGTATTTGGTCCTATT
TACTATGGTCCCCCCCCCATAATAGTCTGTTTGTTTTCCCATCCCATTCA
TTATCTTATTCGCCTTTCTTTTTTTTTCTCTTGCCTTCCTGGTCGTATAT
CTCACGCCCGGGGGTGCGAAAGCAGGCTCTTCGTTCGTGCCTTGCGTTTC
AATCGCAAGAAGCTTTCGGCCCATCATTCCCTCGTCGATTCGCGTCGGAA
CTTGATTCTGATCATTATTATATACCTGGTACATGTTCTCCTCAAATGCG
TTCCTGTTCCTGTTATCTGCCTAAAAATGTGTTTCCCTCCTCCCCTCCCC
GTTGTGGTGTTCGCGCCTTGCGTGTTCATCGCAAAAATCTTTCGGCCCAT
CTTGCCCTCATCGATTCGCATCGGAGTTGATTCTGATCAATATTGTGTAC
CTGGCAAATGCTCCCCCCAAATGCGTCCCTGTTCCTGTTGTCTGCCTGTA
TGGGTGTGCTTTTTGTTTTTTTGTTTCTTTTCTTTTCTGTTTTTTTCTTC
TTTTTTCGAAAAATCTTTTAATGCCCCCGGTTGGTTGTTGAGAAGCTTCA
AAGGGTTGAATTAAGCTCGTCACACTTGCCACTTTTGACGATACGTGTCA
TACGTTGCATACGTGTCAATTGTGTCAATTGAAGTTCTACCTTTTTTTTT
TTTTGTCCTCACGGGCGGTGTGGGGAATTTTTGTCGCGTTTCAGGCGGAG
AAATCGTCGGCGAAGATGAGAGGGATGAAGGAAGAGATGGACAAGCTTAG
GGCGTCAGCCGCCGACCGCGAGCGGCTTAGCTTGACCGCGCAGAGCTTGG
AGGACAGGCTCAAGGAGCGAGAAACACAGGTAATGATAAGGAAGGACACT
ACAGTAGTGTCGGTTCCTCTATAGTGAGTGCCGGTATGATATGCATGGGC
CAGGCAACAATACCGGCACTGCATATATAGCGGCAACCAACCGGCACTAT
TTACTCCGCACATCTTTACTGCCACACTGGTTACAGTAATCCCATCTTTG
CTGCCAAGCGATTTTACATAACACAGGCACTACATATAGCGGGCAACCGG
CACTGTAGAAGGACCTTTTTCGAGAGGGCCGAAGCGTTTTTGTATTTCTG
CTTTGATTGAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAACTCGGCGCGACCTCGAA
GAGCGTGTTGAGGAGCACGGCGTCCACCAAACCAGCACAGACCACGAACC
ATCGAGCCTGTTTTGTTCCCGCGGAAGACCCATTTTTTTCTGAGGCTCCT
CACATGACCTTGAGGAGCTCCATACCTTACAACACCTCACCCGAAAACTG
ACGTTGACCTAAAAATCAAATTGCATCCCGAAGAATAGTCCCATGGCCCA
AGTAGACAATTACGTCATTTTTGTCGAAACAAGATTGGCATTGCGACGGT
TTTGGGTTAAGGAGCTCCGCCATTCAGAAAACGTTTTAGCGGAAATGTGC
CACCTCCCTCTATCGCAGAACACGTCGGAATAGTTTTTGGCGACGAGACA
ACGACAGCAGCAGCAACAACAACAACAAGAGCTGCCGTCCACCGCCAACC
GACTCACTCAAGTTGACGACAGTTTCAGACATCCTTGCGGCGCGAGTTCC
CGGCCACACCTAAAATATGCTTTACGTGTTTTGATAATATTTTGCACACC
TCGGAGGGATGATCGGTCCCGACATGATGATATAGACATTTCAAGGCAGA
TAGATATGTTTATGGTCCTTGTGATCTGCGGTGGATCGCCTTGCCTTGCG
GGAACCTTATAGCCTGCATCATGTGTTGGGACATGTTTCCTGGGCTGGAT
CTCTACCCTGCAGATCCCTCACGATATATCGTAACGGCATGTTAGGATCT
ATTAATAGATTATCTACCTGTATATGATCTATCTGTAGATTATCTGTCTG
TAGATGATCTACCTGTCGATGACCTATCTGTAGATGATCTACCTGTAGAT
GATGACCTAGAGAACATATCAGGGAGGGAGTGTACTAAGATCAAGTTAGA
CTGATAAAAACAGAATTTATACTATTAATAGTTCATGTCTGACTAAAATC
CCGACCCCGCTAGTTCTAGAGTGGTGTTTTTACTACTTCGCCCCAACTTG
CAGTCAGTCTACACCAACTCTGAGGACGTTTCGATAGCCTTTCCAGGCGG
TCGCGGTTAAGGTGCTAAACATGTTTTGTTTTTTTTTTGCAACCATTTCA
GGTATCAATATATTTTTTTCGATTCCGACATGGGCTCCGTTTTCTCTTTT
TTTTTTTTTCGTTCACCCCTTGTATGTCTTACATATATTCGTTCAATTAA
TAGGATGCGTTATCTGGTTTCGATCTCTACTATTAATAAAGTATATGCAT
TACAGTAGCTGGTAGTATATACTATGATTTATTTAGACTATGCTCCCATG
TCACAGGTGAACAACCTCCAGACGGACAAGGAGAAGCTCGAGTCGTACAC
GAAGAAGACCTTGCACAAGTTCCAGGATAAGTACATGGTGGCCATCTCTC
ACTGCAAGGCACAGATTGCAGAGAAAAACGACAAAATCGACTATCTCGAG
GTATGTTGTTGTTGTTGGTGTTGTTGTTGGTGTTGGTGTTGGTGTTGGTG
CTGGTGTTGGTGTTGGTGCTGGTGTTGGTGTTGGTGTTGGTGCTGGTGTT
GGTGTTGGTGTTGGTGTTGGTGCTGGTGTTGGTGTTGCTTCTGTGGGTGA
TATTATTCTTTTTGCTGGTGGTGTTGGTGGTGGTGTTGAGGTTGGTGGTG
TTGTGTGTTGTAGCGGTGTTGGTGGTGTTTGTTGTTGTTGGTGCTCGTTT
TCGTTGTAATGGGTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGTTGCTGCTGCTACTGGTGGTGGTGATGGTGGTGGTGA
TGGTGGTGGTGGTAGTGGTGTTGCCGTTGTTGATGTCGTTGCTGTTCTCT
GACTTTTTATCGCCATAAGGTATTCACATTATGTGGTCACCATGTTCAAG
CTCCAATTCTCTGGAATGGATGGGTAAACCAAAAGCACCCGGGTATCCAT
ATCCCGTTATACGGGTACATCGAGTAGATATAAACTTTGTATGCGGGATG
CTCCTCCTACCAACGAACCGCCTCCTTCGTCTTGGTCGTTTCTGTGATGC
TGGTTGTGTTCATGGTCAGGCTGTTTTCGCGATCGGGGATCGTGATTCGA
CGTTGCTCTTGTCATGCGTGATGCGTGCCTTCCAAAAAATTATATATATA
TATATTTGTGCGTGTTTTTTGTTTGTCTTCCGGTGGATGGGCTGTTGATG
GGTCGGGCCGGAACCTCGCGGGTCAGGTCGGATCGGGTCGGGTAGGGTAA
CGATGACCCGACACGACCTGTGAGAGTTTGATAACCTCCTGACCCGACCC
GACCCGACCCGACCCGACCCGTGATAGTTGAAAATGTTACTGACCGACCC
TGCTCGATGGTCGGGTCATGACCCGTGAAAAGCGTTGGTTGGTAAACAAA
CATCAAGCTTAGGCTCTCACCAGAAATGCGTGCTGCGTGCTGTGTGTGCT
GTGTGTCGATTTGACCCGTCGCTCCCCTCCCGTTACAGGGCTTGTTGTTA
CCACCTCCGGGCGGCATATGAGGAAGTATGTCAATGCGTTGGCGGTGTGG
CTGCTTTTTTTTGTTTTTTGTTTTTTTTTGTCACCGTGGTGTCTGATGCT
TTTTTTTGTTGTTTTTGGGATATATATTTCAGTTTCTGATCCGTTTGGTT
GTTTTTTGTTCTGTCGTGTTTATATATTTCTGTGCGGTTTTCTGCGCGTT
CCTCATGCTTGGTTTGTTTTTATGGTGTGTTTCTTGTGTCGTTTTTTTGT
TTGTTTTTGTTTTTGTTTTTGTTTTTGTTTGTGCTTGTGCTTGTGTTTGT
GCAGAGCAAGGTATCTCAAGACAAGGCTGCTGCTAAGCGGGAGGAAAGGC
TTCTCATGTCTTCGGTCTACGAGCTCGGGATGGACATAATCGAGAGGCAG
CTGAAGTCGTCTGTGAGTTTTTTTTTTTTGTGCGCTGTCGCGTGCCGGTG
TTTTTCGCGCGATGTGTTTGCGGTGATGCAGTTGGTGTGGTCGTGTGTCT
CTTGTTTTGTTTTGTTTCTCTGTTTGTTTTTTCAGTCCTCCGGCGGGCTG
GTAAGATTCGACCTCGGGCTCCCACAACCAACACTTCCGCGCATAAAAAT
ACGTGTCGTGTGTGAATTTAACCTTTCGCTCTCGTTTTACACCAGCAGAT
GCGGCTGCTGTTACGTCGAACGCGCGTGGACATGACGGCCCGACCTGAGG
CCATCACCCGACCGATCTTGCCCTGAGAGGATCATTTTGCGGTGTCTTTG
TGTCTGTGTGCCTGTGTGTCTGTGTGTTTGTGTGTATAATTGATGGCGAC
TATTAATATAACAAAAAAATGGATAGGAACAGTTCGTCCGAACGGCTGCG
AAACGTGTGTCATGAGAGACGTACATTTGTACGAACCGTCAGCGCTAGCT
ACATCGTACCTGGATCGGTCGATATCATCTTCGTATTAGTACGGGGGGCA
TACACAGTGAATAGGACCAAATATTGTTAGTGGAAATAGGGAAATATATG
GGTGCTCGTGTGCACCGTGGGTCCTGTTAACTATGGTCCCTCGTAATCAT
CGTCACAATTGGTGTGAGTCTTTTTGTGTGTGCGTTACCATACATGGCTC
AACATGTCACACGGCCGGGGACGTTTTTTCTATTGCTGGGTTTTCTTGAC
GATGGGTTCGTACCAAGCCGCGGTTTTCGTTGCGTGTCCCCGCCCGCCCT
AAGATATGTTTTGGAGAAAAAAACGCTCCGACTTTTTTTTCGCCCAGAGG
TGTGTGTGTTTGCGTGCTATCTTTTCCGTGCTGCCCAGGTACACACCTGG
TAAGTCGCCGTATTTTTTGTTTCGTCTGTCTGCTTTTGTTTGTGTCTGTG
CAGTGTTCAGTGTTATTTCTTTGCAAGTGAGTTTGGTCTCCTCAACTTGA
CTTGGGGGTTGGATGTTATCGTGTTTTTCCTGTACTCGAACGTGTTGCTC
TTGTTTGTTCTTGGTGGTGTACCGGGTTTAGAATTTCTCGGGAAAAAAGA
AAACTATTCGCGTTTTTTTTTCTTCTTGCTCTCATGCAAATACTAGATAA
TCAAGACTAGAATCTAAAGGGAGATAATCAAGTGAGACAGACTCCTGAAA
GCCTCACGTCCTTTTTTTTTCTGTCGTTTCGGATTTTCCGAACTCATTCT
ATGTATGATGCTCCGTATTAAATGTGGGTACGACTTCGTACCAGGTCGTA
TGTGTGTCTTATTTTGTGGCGTTTTCGTTTTTTTTTTTTTTTTTCTTTCG
CCGCAGGTGTCGGATCAGATCCGCGGTGCCGAGTCAGCACCTGGTTCTTC
GTGGATGCAGCGGCAACGTACGCAAGTCAAAAAGTCCAATCCTGTCGCGC
TGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10636:782..9986-

>mRNA_M-pyrifera_M_contig10636.1373.1 ID=mRNA_M-pyrifera_M_contig10636.1373.1|Name=mRNA_M-pyrifera_M_contig10636.1373.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1278bp|location=Sequence derived from alignment at M-pyrifera_M_contig10636:782..9986- (Macrocystis pyrifera P11B4 male)
CAGTCACAGCTGGAGCACGCTCATCGCATCAAGGACGAACGCTCGGCGGA
GGCGCTGGCGGCGAAGAGAAACGCCGCGGACCTTGAGCAAAAGCAGTCAC
AGCTGGAGCACGCTCATCGCATCAAGGACGAACGCTCGGCGGAGGCGCTG
GCGGCGAAGAGAAACGCCGCGGACCTTGAGCAAAAGAATCACAAGTTGGA
GGAGCTCGTGGCGGAGATGAAGGGAGCACCGGAGAGTGCGGCCCAGAATC
ACAAGTTGGAGGAGCTCGTGGCGGAGATGAAGGGAGCACCGGAGAGTGCG
GCCCAGGCGGAGAAATCGTCGGCGAAGATGAGAGGGATGAAGGAAGAGAT
GGACAAGCTTAGGGCGTCAGCCGCCGACCGCGAGCGGCTTAGCTTGACCG
CGCAGAGCTTGGAGGACAGGCTCAAGGAGCGAGAAACACAGGCGGAGAAA
TCGTCGGCGAAGATGAGAGGGATGAAGGAAGAGATGGACAAGCTTAGGGC
GTCAGCCGCCGACCGCGAGCGGCTTAGCTTGACCGCGCAGAGCTTGGAGG
ACAGGCTCAAGGAGCGAGAAACACAGGTGAACAACCTCCAGACGGACAAG
GAGAAGCTCGAGTCGTACACGAAGAAGACCTTGCACAAGTTCCAGGATAA
GTACATGGTGGCCATCTCTCACTGCAAGGCACAGATTGCAGAGAAAAACG
ACAAAATCGACTATCTCGAGGTGAACAACCTCCAGACGGACAAGGAGAAG
CTCGAGTCGTACACGAAGAAGACCTTGCACAAGTTCCAGGATAAGTACAT
GGTGGCCATCTCTCACTGCAAGGCACAGATTGCAGAGAAAAACGACAAAA
TCGACTATCTCGAGAGCAAGGTATCTCAAGACAAGGCTGCTGCTAAGCGG
GAGGAAAGGCTTCTCATGTCTTCGGTCTACGAGCTCGGGATGGACATAAT
CGAGAGGCAGCTGAAGTCGTCTAGCAAGGTATCTCAAGACAAGGCTGCTG
CTAAGCGGGAGGAAAGGCTTCTCATGTCTTCGGTCTACGAGCTCGGGATG
GACATAATCGAGAGGCAGCTGAAGTCGTCTGTGTCGGATCAGATCCGCGG
TGCCGAGTCAGCACCTGGTTCTTCGTGGATGCAGCGGCAACGTACGCAAG
TCAAAAAGTCCAATCCTGTCGCGCTGTGAGTGTCGGATCAGATCCGCGGT
GCCGAGTCAGCACCTGGTTCTTCGTGGATGCAGCGGCAACGTACGCAAGT
CAAAAAGTCCAATCCTGTCGCGCTGTGA
back to top