mRNA_M-pyrifera_M_contig10635.1372.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10635.1372.1
Unique NamemRNA_M-pyrifera_M_contig10635.1372.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: A0A6H5KC50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC50_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.600e-29
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 MENPQGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASVVDLRRNAHVEG 225
            M   +GR +F+GLLRVEGRFEGVL+P    N++VARSGV+ GD+EGCHSV+VEGTV+GNVSASVV LRR A+V+G
Sbjct:    6 MSFHKGRLQFKGLLRVEGRFEGVLKPVEGANMMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQG 80          
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: D7G3H0_ECTSI (Globin, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H0_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.750e-25
Identity = 51/71 (71.83%), Postives = 63/71 (88.73%), Query Frame = 1
Query:   13 QGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASVVDLRRNAHVEG 225
            QGR +F+GLLRVEGRFEGVL+ A   N++VARSGV+ GD+EGCHSV+VEGT++GNVSASVV LRR A+V+G
Sbjct:   46 QGRLQFKGLLRVEGRFEGVLKAAEGANMMVARSGVIAGDVEGCHSVIVEGTIIGNVSASVVVLRRYANVQG 116          
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: D7FI98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI98_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 6.040e-8
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   13 QGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASVVDLRRNAHVEG 225
            QG   F  LLRV+G F+G L   G  ++++  +GVV G+I+    VV +GTVVGN+ A  V LRR+A V G
Sbjct:   14 QGELSFDRLLRVDGSFKGQLVSTG--DLVIGATGVVRGNIDHLREVVSDGTVVGNIQAERVRLRRSAIVIG 82          
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.130e-7
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   13 QGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASVVDLRRNAHVEG 225
            +G   F  LLRV+G F+G L   G  ++++  +G+V G+IE    VV +GTVVGN+ A  V LRR+A V G
Sbjct:   82 KGELSFDRLLRVDGSFKGQLVSTG--DLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIG 150          
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: A0A6J5FAK7_9BURK (Uncharacterized protein n=1 Tax=Paraburkholderia humisilvae TaxID=627669 RepID=A0A6J5FAK7_9BURK)

HSP 1 Score: 49.3 bits (116), Expect = 2.210e-5
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   16 GRFEFQGLLRVEGRFEG--VLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSAS-VVDLRRNAHVEG 225
            G  EF   +R++G+  G  V +P      +V+  GVV GDI G + V++ GTV+GNVSA   V+L+ NA V G
Sbjct:   27 GDLEFSDGIRLDGKLTGHAVSKPGSHSLFVVSEKGVVHGDIHG-YDVIINGTVLGNVSAEHSVELQANAQVTG 98          
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: A0A1F9U6C2_9BACT (Uncharacterized protein n=1 Tax=Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 TaxID=1797947 RepID=A0A1F9U6C2_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 3.920e-5
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   13 QGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASVVDLRRNAHVEG 225
            QG    +G +RV+G+ EG +  A S  V++  SG V GD+    SVV+ G V+GN+SAS +++   A + G
Sbjct:   24 QGTLASKGSIRVDGKVEGGITEADS--VVIGESGDVQGDVS-AKSVVIGGKVIGNISASSIEILSAAAIHG 91          
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: UPI0011830D65 (polymer-forming cytoskeletal protein n=1 Tax=Paraburkholderia sp. BCC1886 TaxID=2562670 RepID=UPI0011830D65)

HSP 1 Score: 48.5 bits (114), Expect = 4.150e-5
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   16 GRFEFQGLLRVEGRFEGVL--RPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSAS-VVDLRRNAHVEG 225
            G  +F   LR++G  EG +  RP G   ++++  G + G++ G + VVV GT+VG+V+A   V+L+ NAHV G
Sbjct:   27 GDLQFSDGLRLDGHVEGNVSGRPGGQTLLVLSERGSIEGNVHG-YDVVVNGTIVGDVTAEHFVELQSNAHVTG 98          
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: A0A7C2VRS5_9DELT (Polymer-forming cytoskeletal protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2VRS5_9DELT)

HSP 1 Score: 47.4 bits (111), Expect = 7.120e-5
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   13 QGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASV-VDLRRNAHVEG 225
            +G+ +F+G +R++GRF+G +R A    +IV     V G++E   + +V+G V GNV AS  VDLR +A V G
Sbjct:   21 EGKLDFKGAVRIDGRFKGEIRSADL--LIVGEGARVEGEVE-VGTAIVQGEVFGNVRASKKVDLRSSAKVIG 89          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KC50_9PHAE5.600e-2969.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3H0_ECTSI3.750e-2571.83Globin, putative n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7FI98_ECTSI6.040e-846.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN16_9PHAE2.130e-745.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6J5FAK7_9BURK2.210e-542.47Uncharacterized protein n=1 Tax=Paraburkholderia h... [more]
A0A1F9U6C2_9BACT3.920e-539.44Uncharacterized protein n=1 Tax=Elusimicrobia bact... [more]
UPI0011830D654.150e-539.73polymer-forming cytoskeletal protein n=1 Tax=Parab... [more]
A0A7C2VRS5_9DELT7.120e-541.67Polymer-forming cytoskeletal protein n=1 Tax=Delta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10635contigM-pyrifera_M_contig10635:5221..5448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue4.9e-21
Seed eggNOG ortholog2880.D7G3H0
KEGG koko:K02157,ko:K19838,ko:K21440
KEGG Pathwayko04011,ko04310,ko04390,ko04550,ko04934,ko05165,ko05200,ko05210,ko05213,ko05217,ko05224,ko05225,ko05226,map04011,map04310,map04390,map04550,map04934,map05165,map05200,map05210,map05213,map05217,map05224,map05225,map05226
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of GTPase activity
EggNOG OGsKOG3589@1,KOG3589@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04131
Exons1
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.4312277-CDS-M-pyrifera_M_contig10635:5220..54481622815573.4312277-CDS-M-pyrifera_M_contig10635:5220..5448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10635 5221..5448 +
1692277469.8820527-CDS-M-pyrifera_M_contig10635:5220..54481692277469.8820527-CDS-M-pyrifera_M_contig10635:5220..5448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10635 5221..5448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10635.1372.1prot_M-pyrifera_M_contig10635.1372.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10635 5221..5448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10635.1372.1

>prot_M-pyrifera_M_contig10635.1372.1 ID=prot_M-pyrifera_M_contig10635.1372.1|Name=mRNA_M-pyrifera_M_contig10635.1372.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MENPQGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSV
VVEGTVVGNVSASVVDLRRNAHVEG*
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mRNA from alignment at M-pyrifera_M_contig10635:5221..5448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10635.1372.1 ID=mRNA_M-pyrifera_M_contig10635.1372.1|Name=mRNA_M-pyrifera_M_contig10635.1372.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig10635:5221..5448+ (Macrocystis pyrifera P11B4 male)
ATGGAAAACCCTCAGGGGCGTTTCGAGTTCCAGGGTCTCCTGCGCGTGGA GGGGCGCTTCGAGGGAGTCCTGAGGCCCGCGGGGAGCCCGAACGTGATCG TGGCCCGGAGCGGTGTGGTGATCGGGGACATCGAGGGGTGCCACTCCGTG GTGGTGGAGGGAACTGTCGTGGGAAACGTTAGCGCTTCCGTCGTCGACCT CCGACGGAACGCCCACGTAGAAGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10635:5221..5448+

>mRNA_M-pyrifera_M_contig10635.1372.1 ID=mRNA_M-pyrifera_M_contig10635.1372.1|Name=mRNA_M-pyrifera_M_contig10635.1372.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig10635:5221..5448+ (Macrocystis pyrifera P11B4 male)
ATGGAAAACCCTCAGGGGCGTTTCGAGTTCCAGGGTCTCCTGCGCGTGGA
GGGGCGCTTCGAGGGAGTCCTGAGGCCCGCGGGGAGCCCGAACGTGATCG
TGGCCCGGAGCGGTGTGGTGATCGGGGACATCGAGGGGTGCCACTCCGTG
GTGGTGGAGGGAACTGTCGTGGGAAACGTTAGCGCTTCCGTCGTCGACCT
CCGACGGAACGCCCACGTAGAAGGGTGAATGGAAAACCCTCAGGGGCGTT
TCGAGTTCCAGGGTCTCCTGCGCGTGGAGGGGCGCTTCGAGGGAGTCCTG
AGGCCCGCGGGGAGCCCGAACGTGATCGTGGCCCGGAGCGGTGTGGTGAT
CGGGGACATCGAGGGGTGCCACTCCGTGGTGGTGGAGGGAACTGTCGTGG
GAAACGTTAGCGCTTCCGTCGTCGACCTCCGACGGAACGCCCACGTAGAA
GGGTGA
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