mRNA_M-pyrifera_M_contig10635.1372.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: A0A6H5KC50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC50_9PHAE) HSP 1 Score: 107 bits (267), Expect = 5.600e-29 Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = 1 Query: 1 MENPQGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASVVDLRRNAHVEG 225 M +GR +F+GLLRVEGRFEGVL+P N++VARSGV+ GD+EGCHSV+VEGTV+GNVSASVV LRR A+V+G Sbjct: 6 MSFHKGRLQFKGLLRVEGRFEGVLKPVEGANMMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQG 80
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: D7G3H0_ECTSI (Globin, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H0_ECTSI) HSP 1 Score: 106 bits (265), Expect = 3.750e-25 Identity = 51/71 (71.83%), Postives = 63/71 (88.73%), Query Frame = 1 Query: 13 QGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASVVDLRRNAHVEG 225 QGR +F+GLLRVEGRFEGVL+ A N++VARSGV+ GD+EGCHSV+VEGT++GNVSASVV LRR A+V+G Sbjct: 46 QGRLQFKGLLRVEGRFEGVLKAAEGANMMVARSGVIAGDVEGCHSVIVEGTIIGNVSASVVVLRRYANVQG 116
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: D7FI98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI98_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 6.040e-8 Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1 Query: 13 QGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASVVDLRRNAHVEG 225 QG F LLRV+G F+G L G ++++ +GVV G+I+ VV +GTVVGN+ A V LRR+A V G Sbjct: 14 QGELSFDRLLRVDGSFKGQLVSTG--DLVIGATGVVRGNIDHLREVVSDGTVVGNIQAERVRLRRSAIVIG 82
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 2.130e-7 Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1 Query: 13 QGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASVVDLRRNAHVEG 225 +G F LLRV+G F+G L G ++++ +G+V G+IE VV +GTVVGN+ A V LRR+A V G Sbjct: 82 KGELSFDRLLRVDGSFKGQLVSTG--DLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIG 150
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: A0A6J5FAK7_9BURK (Uncharacterized protein n=1 Tax=Paraburkholderia humisilvae TaxID=627669 RepID=A0A6J5FAK7_9BURK) HSP 1 Score: 49.3 bits (116), Expect = 2.210e-5 Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1 Query: 16 GRFEFQGLLRVEGRFEG--VLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSAS-VVDLRRNAHVEG 225 G EF +R++G+ G V +P +V+ GVV GDI G + V++ GTV+GNVSA V+L+ NA V G Sbjct: 27 GDLEFSDGIRLDGKLTGHAVSKPGSHSLFVVSEKGVVHGDIHG-YDVIINGTVLGNVSAEHSVELQANAQVTG 98
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: A0A1F9U6C2_9BACT (Uncharacterized protein n=1 Tax=Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 TaxID=1797947 RepID=A0A1F9U6C2_9BACT) HSP 1 Score: 48.1 bits (113), Expect = 3.920e-5 Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1 Query: 13 QGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASVVDLRRNAHVEG 225 QG +G +RV+G+ EG + A S V++ SG V GD+ SVV+ G V+GN+SAS +++ A + G Sbjct: 24 QGTLASKGSIRVDGKVEGGITEADS--VVIGESGDVQGDVS-AKSVVIGGKVIGNISASSIEILSAAAIHG 91
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: UPI0011830D65 (polymer-forming cytoskeletal protein n=1 Tax=Paraburkholderia sp. BCC1886 TaxID=2562670 RepID=UPI0011830D65) HSP 1 Score: 48.5 bits (114), Expect = 4.150e-5 Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1 Query: 16 GRFEFQGLLRVEGRFEGVL--RPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSAS-VVDLRRNAHVEG 225 G +F LR++G EG + RP G ++++ G + G++ G + VVV GT+VG+V+A V+L+ NAHV G Sbjct: 27 GDLQFSDGLRLDGHVEGNVSGRPGGQTLLVLSERGSIEGNVHG-YDVVVNGTIVGDVTAEHFVELQSNAHVTG 98
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Match: A0A7C2VRS5_9DELT (Polymer-forming cytoskeletal protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2VRS5_9DELT) HSP 1 Score: 47.4 bits (111), Expect = 7.120e-5 Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 13 QGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVVVEGTVVGNVSASV-VDLRRNAHVEG 225 +G+ +F+G +R++GRF+G +R A +IV V G++E + +V+G V GNV AS VDLR +A V G Sbjct: 21 EGKLDFKGAVRIDGRFKGEIRSADL--LIVGEGARVEGEVE-VGTAIVQGEVFGNVRASKKVDLRSSAKVIG 89 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10635.1372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10635.1372.1 >prot_M-pyrifera_M_contig10635.1372.1 ID=prot_M-pyrifera_M_contig10635.1372.1|Name=mRNA_M-pyrifera_M_contig10635.1372.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp MENPQGRFEFQGLLRVEGRFEGVLRPAGSPNVIVARSGVVIGDIEGCHSVback to top mRNA from alignment at M-pyrifera_M_contig10635:5221..5448+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig10635.1372.1 ID=mRNA_M-pyrifera_M_contig10635.1372.1|Name=mRNA_M-pyrifera_M_contig10635.1372.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig10635:5221..5448+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig10635:5221..5448+ >mRNA_M-pyrifera_M_contig10635.1372.1 ID=mRNA_M-pyrifera_M_contig10635.1372.1|Name=mRNA_M-pyrifera_M_contig10635.1372.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig10635:5221..5448+ (Macrocystis pyrifera P11B4 male)back to top |