mRNA_M-pyrifera_M_contig106345.1371.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: K3W8M9_GLOUD (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W8M9_GLOUD) HSP 1 Score: 82.4 bits (202), Expect = 3.520e-16 Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 157 SMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396 SM RLYA L S +V+ V EGK D VGR IA+A+A++P IRP+ F ++F+ LQDLL V YLS LT+AQL++AE++ Sbjct: 205 SMERLYACLENASSYVSDVVEGKIVSDAKVGREIADALASIPAIRPDQFDQIFSSGLQDLLMVSYLSGLTQAQLSMAEKL 284
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A024TRI9_9STRA (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TRI9_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.530e-15 Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1 Query: 10 QEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPP-DPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396 ++V+V+ AE ALDAMV+ E ++ L L ++ RL+A+L +D+V +V GK P +P +GR +A AVA++P IR + F ++F LQDLL V YLS+LT+AQL++AE++ Sbjct: 163 KQVKVVTKTYEAEAIALDAMVKASTAETTS---------LPTDLEALEHAIARLHALLGQSADYVEKVIAGKEPTANPKIGRELAEAVASIPAIRSDVFDQIFNSGLQDLLMVSYLSSLTQAQLSIAEKL 283
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A485LR58_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LR58_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 6.980e-15 Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 10 QEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396 ++V+V AE ALD M + ++ SA TA ++S L + L ++ RL+ +LA +D V V GK +P +GR +A AVA++P IR + F ++F + LQDLL V YLS+LT+AQL++AE++ Sbjct: 161 KQVKVQTKTYEAESIALDVMAK---LDASA-TADASSSSLPTDLAALEHAIARLHDVLARSADFVGDVVAGKQTSNPKIGRELAEAVASIPAIRSDVFDQIFNNGLQDLLMVSYLSSLTQAQLSIAEKL 285
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: W4FPJ1_9STRA (Eukaryotic translation initiation factor 3 subunit F n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPJ1_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 4.810e-14 Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 10 QEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERMAKA 405 ++V+V AE AL+ M AK + S L L S+ RL+A+L +D V V G + +P +GR +A AVA++P IR + F ++F + LQDLL V YLS+LT+AQL++AE++ A Sbjct: 162 KQVKVQTKTYEAESIALNVM---------AKASTAALSSLPTELEALEHSIARLHALLGQSADFVGNVVSGASVGNPKIGRELAEAVASIPAIRTDVFDQIFNNGLQDLLMVSYLSSLTQAQLSIAEKLVNA 284
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A0P1AFY5_PLAHL (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFY5_PLAHL) HSP 1 Score: 76.3 bits (186), Expect = 6.310e-14 Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 1 Query: 157 SMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396 +M +LY + S VA V GK P D +GR I++A+AA+P++R E F ++F LQDLL V YLS LT+AQL++AE++ Sbjct: 197 TMEKLYTCIDGASSFVADVVAGKQPADAKIGREISDALAAIPMLREEQFDQIFNTGLQDLLMVSYLSGLTQAQLSMAEKL 276
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A8B7ZGJ1_ACAPL (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7ZGJ1_ACAPL) HSP 1 Score: 75.5 bits (184), Expect = 1.220e-13 Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 1 SVMQEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396 +V +++ L ER LDA++RG+ S + + + + L H+ +S +L M+A V D+V V GK P D VGR + + VA VP + PE+F R+ T ++DLL V YLS L E QL+L E++ Sbjct: 147 TVFTPIKMALVCHEPERVGLDALIRGQ---ASGRRTMESVNDLQ----HVSKSSVKLQEMIAIVLDYVDDVLNGKIPADNQVGRFLMDLVANVPKLDPEEFERIITSNMKDLLMVVYLSNLVETQLSLNEKL 271
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A812X8J9_SYMMI (TIF3F1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X8J9_SYMMI) HSP 1 Score: 75.5 bits (184), Expect = 1.370e-13 Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 1 Query: 1 SVMQEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERMAKAL 408 ++ QEV V L PAE T L+ M+ G+ + S ++ S + + L S+RRL ++ +S +V V G PD +G IA+ ++++ ++ P+DF R QD+L V YLS LT+AQLA+AE++ + + Sbjct: 156 NMFQEVHVELCLSPAETTCLNHMISGQE-QDSTFSSPEMLSSIPSVPADLTSSLRRLVGLVDKISAYVDEVAAGTREPDAQIGIMIADVLSSLQVVGPDDFQRYMDAKTQDMLMVSYLSNLTKAQLAVAEKLIQVI 290
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A6G0W460_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W460_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.690e-13 Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1 Query: 10 QEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396 ++++V AE ALD M + E A L L R++ RL+ +L+ +D+V V GK P +P + R +A+AVA++P IR + F ++F + LQDLL V YLS+LT+AQL++AE++ Sbjct: 159 KQIKVQTKTYEAESIALDVMSKSE-----------AAPSLPSDLEALERAITRLHTILSQSADYVGDVIAGKIPANPKICRDLADAVASIPPIRSDVFDQIFNNGLQDLLMVSYLSSLTQAQLSIAEKL 276
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A662XXQ2_9STRA (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXQ2_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.830e-13 Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1 Query: 157 SMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396 ++ RLYA + S V V G P D +GR IA+A+AA+P++R E F ++F LQDLL V YLS LT+AQL++AE++ Sbjct: 203 TIERLYACIDRASGFVGEVVAGSQPADAKLGREIADALAAIPMLRQEQFDQLFNSGLQDLLMVSYLSGLTQAQLSMAEKL 282
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A3M6VE70_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VE70_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.650e-11 Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 1 Query: 157 SMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396 +M++LY + S V V GK D +GR IA+A+AA+P++R + F ++F LQDLL V YLS LT+AQL++AE++ Sbjct: 197 TMQQLYKCIDGASTFVGDVVSGKQMGDAKLGREIADALAAIPVLREDQFDQLFNTGLQDLLMVSYLSGLTQAQLSMAEKL 276 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig106345.1371.1 >prot_M-pyrifera_M_contig106345.1371.1 ID=prot_M-pyrifera_M_contig106345.1371.1|Name=mRNA_M-pyrifera_M_contig106345.1371.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp MQEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRback to top mRNA from alignment at M-pyrifera_M_contig106345:206..622- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig106345.1371.1 ID=mRNA_M-pyrifera_M_contig106345.1371.1|Name=mRNA_M-pyrifera_M_contig106345.1371.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig106345:206..622- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig106345:206..622- >mRNA_M-pyrifera_M_contig106345.1371.1 ID=mRNA_M-pyrifera_M_contig106345.1371.1|Name=mRNA_M-pyrifera_M_contig106345.1371.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig106345:206..622- (Macrocystis pyrifera P11B4 male)back to top |