mRNA_M-pyrifera_M_contig106345.1371.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106345.1371.1
Unique NamemRNA_M-pyrifera_M_contig106345.1371.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: K3W8M9_GLOUD (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W8M9_GLOUD)

HSP 1 Score: 82.4 bits (202), Expect = 3.520e-16
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  157 SMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396
            SM RLYA L   S +V+ V EGK   D  VGR IA+A+A++P IRP+ F ++F+  LQDLL V YLS LT+AQL++AE++
Sbjct:  205 SMERLYACLENASSYVSDVVEGKIVSDAKVGREIADALASIPAIRPDQFDQIFSSGLQDLLMVSYLSGLTQAQLSMAEKL 284          
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A024TRI9_9STRA (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TRI9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.530e-15
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   10 QEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPP-DPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396
            ++V+V+     AE  ALDAMV+    E ++         L      L  ++ RL+A+L   +D+V +V  GK P  +P +GR +A AVA++P IR + F ++F   LQDLL V YLS+LT+AQL++AE++
Sbjct:  163 KQVKVVTKTYEAEAIALDAMVKASTAETTS---------LPTDLEALEHAIARLHALLGQSADYVEKVIAGKEPTANPKIGRELAEAVASIPAIRSDVFDQIFNSGLQDLLMVSYLSSLTQAQLSIAEKL 283          
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A485LR58_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LR58_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.980e-15
Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 1
Query:   10 QEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396
            ++V+V      AE  ALD M +   ++ SA TA  ++S L    + L  ++ RL+ +LA  +D V  V  GK   +P +GR +A AVA++P IR + F ++F + LQDLL V YLS+LT+AQL++AE++
Sbjct:  161 KQVKVQTKTYEAESIALDVMAK---LDASA-TADASSSSLPTDLAALEHAIARLHDVLARSADFVGDVVAGKQTSNPKIGRELAEAVASIPAIRSDVFDQIFNNGLQDLLMVSYLSSLTQAQLSIAEKL 285          
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: W4FPJ1_9STRA (Eukaryotic translation initiation factor 3 subunit F n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPJ1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.810e-14
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   10 QEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERMAKA 405
            ++V+V      AE  AL+ M         AK +    S L      L  S+ RL+A+L   +D V  V  G +  +P +GR +A AVA++P IR + F ++F + LQDLL V YLS+LT+AQL++AE++  A
Sbjct:  162 KQVKVQTKTYEAESIALNVM---------AKASTAALSSLPTELEALEHSIARLHALLGQSADFVGNVVSGASVGNPKIGRELAEAVASIPAIRTDVFDQIFNNGLQDLLMVSYLSSLTQAQLSIAEKLVNA 284          
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A0P1AFY5_PLAHL (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFY5_PLAHL)

HSP 1 Score: 76.3 bits (186), Expect = 6.310e-14
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  157 SMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396
            +M +LY  +   S  VA V  GK P D  +GR I++A+AA+P++R E F ++F   LQDLL V YLS LT+AQL++AE++
Sbjct:  197 TMEKLYTCIDGASSFVADVVAGKQPADAKIGREISDALAAIPMLREEQFDQIFNTGLQDLLMVSYLSGLTQAQLSMAEKL 276          
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A8B7ZGJ1_ACAPL (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7ZGJ1_ACAPL)

HSP 1 Score: 75.5 bits (184), Expect = 1.220e-13
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 SVMQEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396
            +V   +++ L     ER  LDA++RG+    S +  + + + L     H+ +S  +L  M+A V D+V  V  GK P D  VGR + + VA VP + PE+F R+ T  ++DLL V YLS L E QL+L E++
Sbjct:  147 TVFTPIKMALVCHEPERVGLDALIRGQ---ASGRRTMESVNDLQ----HVSKSSVKLQEMIAIVLDYVDDVLNGKIPADNQVGRFLMDLVANVPKLDPEEFERIITSNMKDLLMVVYLSNLVETQLSLNEKL 271          
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A812X8J9_SYMMI (TIF3F1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X8J9_SYMMI)

HSP 1 Score: 75.5 bits (184), Expect = 1.370e-13
Identity = 47/136 (34.56%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 SVMQEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERMAKAL 408
            ++ QEV V L   PAE T L+ M+ G+  + S  ++    S +    + L  S+RRL  ++  +S +V  V  G   PD  +G  IA+ ++++ ++ P+DF R      QD+L V YLS LT+AQLA+AE++ + +
Sbjct:  156 NMFQEVHVELCLSPAETTCLNHMISGQE-QDSTFSSPEMLSSIPSVPADLTSSLRRLVGLVDKISAYVDEVAAGTREPDAQIGIMIADVLSSLQVVGPDDFQRYMDAKTQDMLMVSYLSNLTKAQLAVAEKLIQVI 290          
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A6G0W460_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W460_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.690e-13
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   10 QEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLRSMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396
            ++++V      AE  ALD M + E            A  L      L R++ RL+ +L+  +D+V  V  GK P +P + R +A+AVA++P IR + F ++F + LQDLL V YLS+LT+AQL++AE++
Sbjct:  159 KQIKVQTKTYEAESIALDVMSKSE-----------AAPSLPSDLEALERAITRLHTILSQSADYVGDVIAGKIPANPKICRDLADAVASIPPIRSDVFDQIFNNGLQDLLMVSYLSSLTQAQLSIAEKL 276          
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A662XXQ2_9STRA (Eukaryotic translation initiation factor 3 subunit F n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXQ2_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.830e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  157 SMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396
            ++ RLYA +   S  V  V  G  P D  +GR IA+A+AA+P++R E F ++F   LQDLL V YLS LT+AQL++AE++
Sbjct:  203 TIERLYACIDRASGFVGEVVAGSQPADAKLGREIADALAAIPMLRQEQFDQLFNSGLQDLLMVSYLSGLTQAQLSMAEKL 282          
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Match: A0A3M6VE70_9STRA (Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VE70_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.650e-11
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  157 SMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFGRVFTDALQDLLAVGYLSTLTEAQLALAERM 396
            +M++LY  +   S  V  V  GK   D  +GR IA+A+AA+P++R + F ++F   LQDLL V YLS LT+AQL++AE++
Sbjct:  197 TMQQLYKCIDGASTFVGDVVSGKQMGDAKLGREIADALAAIPVLREDQFDQLFNTGLQDLLMVSYLSGLTQAQLSMAEKL 276          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106345.1371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3W8M9_GLOUD3.520e-1653.75Eukaryotic translation initiation factor 3 subunit... [more]
A0A024TRI9_9STRA2.530e-1539.23Eukaryotic translation initiation factor 3 subunit... [more]
A0A485LR58_9STRA6.980e-1540.31Eukaryotic translation initiation factor 3 subunit... [more]
W4FPJ1_9STRA4.810e-1437.88Eukaryotic translation initiation factor 3 subunit... [more]
A0A0P1AFY5_PLAHL6.310e-1447.50Eukaryotic translation initiation factor 3 subunit... [more]
A0A8B7ZGJ1_ACAPL1.220e-1337.12Eukaryotic translation initiation factor 3 subunit... [more]
A0A812X8J9_SYMMI1.370e-1334.56TIF3F1 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A6G0W460_9STRA1.690e-1337.21Eukaryotic translation initiation factor 3 subunit... [more]
A0A662XXQ2_9STRA4.830e-1347.50Eukaryotic translation initiation factor 3 subunit... [more]
A0A3M6VE70_9STRA1.650e-1145.00Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106345contigM-pyrifera_M_contig106345:206..622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue6.3e-19
Seed eggNOG ortholog2880.D8LDJ7
Preferred nameEIF3F
KEGG koko:K03249
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0001732,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006355,GO:0006357,GO:0006412,GO:0006413,GO:0006464,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008593,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009790,GO:0009791,GO:0009793,GO:0009846,GO:0009856,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0016020,GO:0016032,GO:0016043,GO:0016282,GO:0016579,GO:0016787,GO:0019080,GO:0019081,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023056,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031369,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034622,GO:0034641,GO:0034645,GO:0036211,GO:0036459,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045747,GO:0045892,GO:0045934,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0060255,GO:0061458,GO:0065003,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0075522,GO:0080090,GO:0097159,GO:0101005,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1310@1,KOG2975@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04147
Exons1
Model size417
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.3834567-CDS-M-pyrifera_M_contig106345:205..6161622815573.3834567-CDS-M-pyrifera_M_contig106345:205..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106345 206..616 -
1692277469.8580112-CDS-M-pyrifera_M_contig106345:205..6161692277469.8580112-CDS-M-pyrifera_M_contig106345:205..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106345 206..616 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.3965364-UTR-M-pyrifera_M_contig106345:616..6221622815573.3965364-UTR-M-pyrifera_M_contig106345:616..622Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106345 617..622 -
1692277469.8716192-UTR-M-pyrifera_M_contig106345:616..6221692277469.8716192-UTR-M-pyrifera_M_contig106345:616..622Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106345 617..622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106345.1371.1prot_M-pyrifera_M_contig106345.1371.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106345 206..616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106345.1371.1

>prot_M-pyrifera_M_contig106345.1371.1 ID=prot_M-pyrifera_M_contig106345.1371.1|Name=mRNA_M-pyrifera_M_contig106345.1371.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MQEVRVLLAAEPAERTALDAMVRGERVEGSAKTAIGTASRLSPARSHLLR
SMRRLYAMLAAVSDHVARVTEGKAPPDPVVGRAIANAVAAVPIIRPEDFG
RVFTDALQDLLAVGYLSTLTEAQLALAERMAKALPF*
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mRNA from alignment at M-pyrifera_M_contig106345:206..622-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106345.1371.1 ID=mRNA_M-pyrifera_M_contig106345.1371.1|Name=mRNA_M-pyrifera_M_contig106345.1371.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig106345:206..622- (Macrocystis pyrifera P11B4 male)
TCCGTGATGCAGGAGGTGCGGGTGCTCCTGGCCGCAGAGCCCGCCGAGCG CACTGCGCTGGACGCCATGGTGCGTGGGGAGCGGGTAGAAGGCAGCGCCA AGACCGCAATCGGCACTGCGTCGCGTCTTTCCCCGGCCCGCAGCCACCTC CTGCGGTCCATGCGCCGGCTCTATGCCATGCTCGCCGCCGTCAGCGACCA CGTGGCCCGCGTCACCGAGGGAAAGGCCCCGCCCGACCCCGTTGTAGGCA GAGCCATCGCAAACGCTGTCGCCGCAGTCCCCATCATCCGACCAGAAGAC TTTGGAAGGGTCTTCACAGACGCACTCCAGGACCTCCTCGCAGTAGGGTA CCTCTCCACCCTCACAGAAGCACAACTCGCGCTCGCAGAGAGAATGGCAA AAGCACTCCCGTTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106345:206..622-

>mRNA_M-pyrifera_M_contig106345.1371.1 ID=mRNA_M-pyrifera_M_contig106345.1371.1|Name=mRNA_M-pyrifera_M_contig106345.1371.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig106345:206..622- (Macrocystis pyrifera P11B4 male)
ATGCAGGAGGTGCGGGTGCTCCTGGCCGCAGAGCCCGCCGAGCGCACTGC
GCTGGACGCCATGGTGCGTGGGGAGCGGGTAGAAGGCAGCGCCAAGACCG
CAATCGGCACTGCGTCGCGTCTTTCCCCGGCCCGCAGCCACCTCCTGCGG
TCCATGCGCCGGCTCTATGCCATGCTCGCCGCCGTCAGCGACCACGTGGC
CCGCGTCACCGAGGGAAAGGCCCCGCCCGACCCCGTTGTAGGCAGAGCCA
TCGCAAACGCTGTCGCCGCAGTCCCCATCATCCGACCAGAAGACTTTGGA
AGGGTCTTCACAGACGCACTCCAGGACCTCCTCGCAGTAGGGTACCTCTC
CACCCTCACAGAAGCACAACTCGCGCTCGCAGAGAGAATGGCAAAAGCAC
TCCCGTTTTGAATGCAGGAGGTGCGGGTGCTCCTGGCCGCAGAGCCCGCC
GAGCGCACTGCGCTGGACGCCATGGTGCGTGGGGAGCGGGTAGAAGGCAG
CGCCAAGACCGCAATCGGCACTGCGTCGCGTCTTTCCCCGGCCCGCAGCC
ACCTCCTGCGGTCCATGCGCCGGCTCTATGCCATGCTCGCCGCCGTCAGC
GACCACGTGGCCCGCGTCACCGAGGGAAAGGCCCCGCCCGACCCCGTTGT
AGGCAGAGCCATCGCAAACGCTGTCGCCGCAGTCCCCATCATCCGACCAG
AAGACTTTGGAAGGGTCTTCACAGACGCACTCCAGGACCTCCTCGCAGTA
GGGTACCTCTCCACCCTCACAGAAGCACAACTCGCGCTCGCAGAGAGAAT
GGCAAAAGCACTCCCGTTTTGA
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