mRNA_M-pyrifera_M_contig106323.1369.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106323.1369.1
Unique NamemRNA_M-pyrifera_M_contig106323.1369.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106323.1369.1 vs. uniprot
Match: A0A3M2GL60_ACTSX (Uncharacterized protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GL60_ACTSX)

HSP 1 Score: 92.0 bits (227), Expect = 1.290e-19
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   73 LAVVILVPLFGEDFSAGQNALLILFVAAAATTASAPYRVLYTAFAADRVVAVVTVGAAGVNFGANLLVIGRWGIEGAAATTLLTQLGMFVFFAVWSHRARA 375
            LAV  L P++G +F AG++AL++L VA   TT SAP RVL+  F +DR VA+VTV AA  N GANLL++G WG+  AAATTL  Q+ +  +F  W  RA A
Sbjct:  204 LAVWSLGPVWGPEFVAGRDALVLLVVAVGLTTVSAPLRVLHVGFGSDRQVALVTVLAAVGNLGANLLLVGTWGMTAAAATTLAAQVALLAYFVTWGWRAAA 304
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106323.1369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3M2GL60_ACTSX1.290e-1952.48Uncharacterized protein n=1 Tax=Actinomyces sp. Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106323contigM-pyrifera_M_contig106323:26..439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size414
Cds size414
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.28453-CDS-M-pyrifera_M_contig106323:25..4391622815573.28453-CDS-M-pyrifera_M_contig106323:25..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106323 26..439 +
1692277469.8165512-CDS-M-pyrifera_M_contig106323:25..4391692277469.8165512-CDS-M-pyrifera_M_contig106323:25..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106323 26..439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106323.1369.1prot_M-pyrifera_M_contig106323.1369.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106323 26..439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106323.1369.1

>prot_M-pyrifera_M_contig106323.1369.1 ID=prot_M-pyrifera_M_contig106323.1369.1|Name=mRNA_M-pyrifera_M_contig106323.1369.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MARVHRLADRAALIGGLATIPATGLAVVILVPLFGEDFSAGQNALLILFV
AAAATTASAPYRVLYTAFAADRVVAVVTVGAAGVNFGANLLVIGRWGIEG
AAATTLLTQLGMFVFFAVWSHRARAGALEESRLAVSP*
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mRNA from alignment at M-pyrifera_M_contig106323:26..439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106323.1369.1 ID=mRNA_M-pyrifera_M_contig106323.1369.1|Name=mRNA_M-pyrifera_M_contig106323.1369.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig106323:26..439+ (Macrocystis pyrifera P11B4 male)
ATGGCCAGAGTGCATCGCCTGGCCGACCGTGCTGCGCTCATCGGCGGGCT
GGCGACGATCCCGGCGACTGGCCTCGCCGTGGTGATCCTCGTGCCGCTCT
TCGGTGAAGACTTCTCCGCAGGACAGAACGCCCTGCTCATTCTGTTCGTG
GCAGCCGCGGCGACCACGGCCTCGGCGCCCTATCGCGTGCTCTACACAGC
CTTTGCGGCGGACCGTGTCGTTGCTGTGGTCACTGTCGGTGCCGCGGGAG
TCAACTTCGGGGCGAATCTTCTCGTGATCGGTCGATGGGGGATCGAGGGC
GCGGCCGCGACCACACTGCTGACTCAGCTGGGCATGTTCGTGTTCTTCGC
CGTGTGGTCGCACCGGGCTCGCGCCGGCGCTCTCGAGGAGTCGCGCCTCG
CGGTCAGTCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106323:26..439+

>mRNA_M-pyrifera_M_contig106323.1369.1 ID=mRNA_M-pyrifera_M_contig106323.1369.1|Name=mRNA_M-pyrifera_M_contig106323.1369.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig106323:26..439+ (Macrocystis pyrifera P11B4 male)
ATGGCCAGAGTGCATCGCCTGGCCGACCGTGCTGCGCTCATCGGCGGGCT
GGCGACGATCCCGGCGACTGGCCTCGCCGTGGTGATCCTCGTGCCGCTCT
TCGGTGAAGACTTCTCCGCAGGACAGAACGCCCTGCTCATTCTGTTCGTG
GCAGCCGCGGCGACCACGGCCTCGGCGCCCTATCGCGTGCTCTACACAGC
CTTTGCGGCGGACCGTGTCGTTGCTGTGGTCACTGTCGGTGCCGCGGGAG
TCAACTTCGGGGCGAATCTTCTCGTGATCGGTCGATGGGGGATCGAGGGC
GCGGCCGCGACCACACTGCTGACTCAGCTGGGCATGTTCGTGTTCTTCGC
CGTGTGGTCGCACCGGGCTCGCGCCGGCGCTCTCGAGGAGTCGCGCCTCG
CGGTCAGTCCCTGAATGGCCAGAGTGCATCGCCTGGCCGACCGTGCTGCG
CTCATCGGCGGGCTGGCGACGATCCCGGCGACTGGCCTCGCCGTGGTGAT
CCTCGTGCCGCTCTTCGGTGAAGACTTCTCCGCAGGACAGAACGCCCTGC
TCATTCTGTTCGTGGCAGCCGCGGCGACCACGGCCTCGGCGCCCTATCGC
GTGCTCTACACAGCCTTTGCGGCGGACCGTGTCGTTGCTGTGGTCACTGT
CGGTGCCGCGGGAGTCAACTTCGGGGCGAATCTTCTCGTGATCGGTCGAT
GGGGGATCGAGGGCGCGGCCGCGACCACACTGCTGACTCAGCTGGGCATG
TTCGTGTTCTTCGCCGTGTGGTCGCACCGGGCTCGCGCCGGCGCTCTCGA
GGAGTCGCGCCTCGCGGTCAGTCCCTGA
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